Rh7CG472200

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018449
Physical Location & Seq
Reverse (-)
63368352 .. 63369277
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG472200.1

Sequence Viewer

Length: 843 bp
ATGGATTCGCAGGATGTGGTGGTCACTTCCCGGCGGGAGGAGCGGTTCAGCGCCTCCGTGGAACAAGTCGAACCCATCTACCCACCAGGTCTGGAACAAGCACCTTCACCTGCTCGACTTCAAGTCCACTTTGTCTACATTACCCAGCACCAAATCTTCTTCAGTTCATGGTCTACCCGGAGCATATACTCCCTCCCATCATCACCGGAAGAAGACTGCCCAACCCTGATCCACCATTATGAGGACCCCGTGATGAAACTGTGTGGTGAATTCGATCTGCAAGTGCTACTGAGTACGGATGACGAACTGGGTGCAAATTTTTCACCGTTTCTTTCGCAATTTGAAATCACGCAAGGCAGCGAGGAGCACACCCGAATATTGGGTGAGGTTAAGCGTGTGGGCAGGGAATTTGGCCCGGAGAGGAAGAATCAAGGGTTATTTGCCTTGCAAGTTTCGATTTTAAGAGTATACACGACATATCGTTGCGAGAGTAATCCTAAGCCGGATGTAGAGGGGGAAGAGATGTCGGATTGGGATGTTATAGAGGGGGAAGAGATAACCGACGTCATAGAGGGGGGAGAGATGCCGGTTTGGGACGTTATAGAGGGGGAAGAGATGAGGGTTAGAGTTCCAGGGGAAGAGATCTGTAGTGTGTGCTTGAAAGAGTTTAGGAGTTGCCCGCCTTGCATTGCCATGCCTTGCTCACATGTGTTTCATAGCGAATGCATTCGGACATGGCTGGGACGGAATGAACGCTCTTGTCCTCTTTGCAGATTTCAGTTGCCTACTATAGTTGAACCATCCTTCACATATATGTTCCATCTTGGGCTTAATCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

280

Amino Acids

32.0

Weight (kDa)

4.66

Isoelectric Point (pI)

70.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 211 - 258 1.3e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 216 - 258 2.3e-11 Ring finger domain
zf-C3HC4 PF00097 216 - 257 8.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 216 - 243 1.1e-06 RING-like zinc finger
zf-C3HC4_2 PF13923 216 - 257 8.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 216 - 255 3.5e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g35350 FvH4_5g35361
rosa_chinensis RchiOBHm_Chr7g0236701
rosa_laevigata RLG00000001067
rosa_multiflora Rmu_sc0002536.1_g000017
rosa_roxburghii Rroxscaffold_3G00224950
rosa_rugosa Rorug07G0298300
rosa_samantha Rh7AG453700 Rh7CG472200 Rh7DG441100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 43
AccI GTMKAC 3 cut(s) 135, 173, 468
AciI CCGC 3 cut(s) 34, 43, 680
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 3 cut(s) 269, 316, 407
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 37, 241, 379
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 4 cut(s) 122, 344, 661, 797
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 2 cut(s) 85, 631
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 3 cut(s) 269, 316, 407
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 244, 413
AsuC2I CCSGG 3 cut(s) 31, 178, 416
AsuHPI GGTGA 5 cut(s) 99, 195, 278, 315, 395
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 369
BccI CCATC 4 cut(s) 83, 205, 808, 828
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 2 cut(s) 87, 633
BcnI CCSGG 3 cut(s) 31, 178, 416
BfmI CTRYAG 2 cut(s) 646, 789
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 1 cut(s) 642
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 5 cut(s) 31, 87, 178, 416, 633
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 244, 413
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 5 cut(s) 31, 87, 178, 416, 633
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 573
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 3 cut(s) 31, 178, 416
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 57, 632
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 241, 379
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 2 cut(s) 87, 633
BseDI CCNNGG 2 cut(s) 57, 632
BseGI GGATG 5 cut(s) 19, 304, 511, 541, 800
BseLI CCNNNNNNNGG 3 cut(s) 37, 241, 379
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 53, 377
BseXI GCAGC 1 cut(s) 369
BseYI CCCAGC 2 cut(s) 144, 739
BshFI GGCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
BslFI GGGAC 2 cut(s) 608, 756
BslI CCNNNNNNNGG 3 cut(s) 37, 241, 379
BsmFI GGGAC 2 cut(s) 608, 756
BsmI GAATGC 2 cut(s) 726, 728
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 228, 274, 642
BspACI CCGC 3 cut(s) 34, 43, 680
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 586
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 586
BssECI CCNNGG 2 cut(s) 57, 632
BssMI GATC 3 cut(s) 228, 274, 642
BssNAI GTATAC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 469
Bst2UI CCWGG 2 cut(s) 87, 633
Bst4CI ACNGT 2 cut(s) 261, 327
Bst6I CTCTTC 4 cut(s) 513, 546, 606, 633
BstACI GRCGYC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 2 cut(s) 290, 498
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 19, 304, 511, 541, 800
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 231, 277, 645
BstMBI GATC 3 cut(s) 228, 274, 642
BstMWI GCNNNNNNNGC 2 cut(s) 40, 684
BstNI CCWGG 2 cut(s) 87, 633
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 5 cut(s) 29, 85, 176, 414, 631
BstSFI CTRYAG 2 cut(s) 646, 789
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
BstZ17I GTATAC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 5 cut(s) 19, 304, 511, 541, 800
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 680
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 2 cut(s) 244, 413
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 294
CviAII CATG 4 cut(s) 168, 694, 707, 735
CviJI RGCY 4 cut(s) 414, 502, 739, 829
CviKI_1 RGCY 4 cut(s) 414, 502, 739, 829
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 290, 498
DpnI GATC 3 cut(s) 230, 276, 644
DpnII GATC 3 cut(s) 228, 274, 642
DriI GACNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 4 cut(s) 513, 546, 606, 633
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 4 cut(s) 513, 546, 606, 633
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 85, 631
EcoT22I ATGCAT 1 cut(s) 728
FaeI CATG 4 cut(s) 171, 697, 710, 738
FaqI GGGAC 2 cut(s) 608, 756
FatI CATG 4 cut(s) 167, 693, 706, 734
FauI CCCGC 2 cut(s) 27, 687
FblI GTMKAC 3 cut(s) 135, 173, 468
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 5 cut(s) 26, 311, 518, 548, 787
Fsp4HI GCNGC 1 cut(s) 358
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 358
GsaI CCCAGC 2 cut(s) 148, 743
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 414
HapII CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 4 cut(s) 171, 697, 710, 738
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 5, 427
HpaII CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
HphI GGTGA 5 cut(s) 99, 195, 278, 315, 395
Hpy166II GTNNAC 4 cut(s) 127, 136, 174, 469
Hpy188I TCNGA 2 cut(s) 529, 732
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 4 cut(s) 127, 136, 174, 469
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 114, 814
HpyCH4III ACNGT 2 cut(s) 261, 327
HpyCH4IV ACGT 2 cut(s) 564, 597
HpyCH4V TGCA 6 cut(s) 280, 314, 448, 687, 726, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 684
HpyF3I CTNAG 2 cut(s) 290, 498
HpySE526I ACGT 2 cut(s) 564, 597
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 4 cut(s) 171, 697, 710, 738
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 228, 274, 642
LmnI GCTCC 3 cut(s) 40, 180, 364
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 573
MabI ACCWGGT 1 cut(s) 85
MaeII ACGT 2 cut(s) 564, 597
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 230, 276, 644
MbiI CCGCTC 1 cut(s) 43
MboI GATC 3 cut(s) 228, 274, 642
MboII GAAGA 9 cut(s) 148, 151, 221, 224, 436, 530, 563, 623, 650
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 269, 316, 338, 407
MmeI TCCRAC 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 390, 461, 831, 841
MslI CAYNNNNRTG 3 cut(s) 237, 692, 812
MspI CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
MspR9I CCNGG 5 cut(s) 31, 87, 178, 416, 633
Mva1269I GAATGC 2 cut(s) 726, 728
MvaI CCWGG 2 cut(s) 87, 633
MwoI GCNNNNNNNGC 2 cut(s) 40, 684
NciI CCSGG 3 cut(s) 31, 178, 416
NdeII GATC 3 cut(s) 228, 274, 642
NlaIII CATG 4 cut(s) 171, 697, 710, 738
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 706
PctI GAATGC 2 cut(s) 726, 728
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 5, 427
PkrI GCNGC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 244
PscI ACATGT 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 85, 631
PspFI CCCAGC 2 cut(s) 144, 739
PspGI CCWGG 2 cut(s) 85, 631
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 244, 413
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 642
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 3 cut(s) 237, 692, 812
SaqAI TTAA 4 cut(s) 390, 461, 831, 841
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 3 cut(s) 228, 274, 642
Sau96I GGNCC 2 cut(s) 244, 413
ScrFI CCNGG 5 cut(s) 31, 87, 178, 416, 633
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 91, 106, 112, 390, 567, 600
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 2 cut(s) 646, 789
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 237, 692, 812
Sse9I AATT 4 cut(s) 269, 316, 338, 407
SsiI CCGC 3 cut(s) 34, 43, 680
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 5 cut(s) 29, 85, 176, 414, 631
TaaI ACNGT 2 cut(s) 261, 327
TaiI ACGT 2 cut(s) 567, 600
TaqI TCGA 4 cut(s) 69, 115, 273, 455
TasI AATT 4 cut(s) 269, 316, 338, 407
TfiI GAWTC 2 cut(s) 5, 427
Tru1I TTAA 4 cut(s) 390, 461, 831, 841
Tru9I TTAA 4 cut(s) 390, 461, 831, 841
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 156, 269, 704, 765
TspGWI ACGGA 3 cut(s) 46, 311, 760
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 3 cut(s) 269, 316, 407
XceI RCATGY 1 cut(s) 710
XmiI GTMKAC 3 cut(s) 135, 173, 468
XmnI GAANNNNTTC 1 cut(s) 726
ZraI GACGTC 1 cut(s) 565
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.