FvH4_5g37150

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010696
Physical Location & Seq
Forward (+)
27229441 .. 27235950
6510 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37150.t1

Sequence Viewer

Length: 831 bp
ATGTATAGTAGTAGCACTCTCCAAGTTGCCACAAGCAGAGTTTCAGAGAGACTTCCTTTGTTAGCTATGGAGAAAGATAGCAGGGAGAGTCATGTTTACCATGCCAGACTTGCTGAACAAGCCGAGAGATATGACGAGATGATTGAAGTGATGAGAAAAATAGCTAAGTTGGATGTGGAATTGACCGTGGAAGAGCGAAATTTGTTGTCTGTTGGGTATAAGAATGTGATTGGGGCAAGAAGGGCGTCATGGCGGATCTTGTCTTCCATTGAACAGAAGGAGGAAGTCAAGGGAAATGAGCAGAATGTGAAGCGAATAAAGGAGTACATGCAGAGGGTCGAAGATGAGCTTGCAACAATTTGCAATGACATGCTATCAGTCATTGATTATCATCTCCTCCCTTCTTCATCGACAGGGGAATCTACTGTATTCTACCGTAAGATGAAAGGAGATTACTATCGTTATTTAGCTGAATTCAAAGAGGGTGATGATCGCACAGAAGCTGCTGATCAGTCTCTTAAAGCCTATGAGGCTGCCAGTAGTAGTGCTGCCTCTGAGTTGCCCCCAACTCATCCAATCAGACTTGGACTTTCTCTGAACTACTCTGTCTTTTACTACGAAATTCTCAAATCCTCTGAGAGGGCATGCGATCTCGCTAAGCAGGCATATGATGATGCCGTCACTGAGCTTGACAGTCTTGATCAAGAATCCTACAAGGACAGCACCCTCATTATGCAGCTTCTCAGGGAGAATCTCACATTGTGGAACTCAGATCTTCTAGAGAGAGGAGGTGAGCACTCTAAAGTTGATGAATCCCAGCTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

277

Amino Acids

31.68

Weight (kDa)

4.97

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 35 - 256 2e-101 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010696)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22300 AT1G22300 AT1G22300 AT1G34760 AT1G34760
fragaria_vesca FvH4_5g37150
malus_domestica MD08G1184000.v1.1 MD15G1370500.v1.1
prunus_persica Prupe.1G518200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238741
rosa_laevigata RLG00000000816
rosa_multiflora Rmu_sc0010914.1_g000010
rosa_roxburghii Rroxscaffold_3G00221590
rosa_rugosa Rorug07G0323200.1 Rorug07G0323300.1
rosa_samantha Rh7AG477600 Rh7BG448900 Rh7CG495600 Rh7DG462600
rosa_wichuraiana Rw7G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 3 cut(s) 199, 473, 621
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 762
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 639
AgsI TTSAA 3 cut(s) 146, 272, 478
AluBI AGCT 8 cut(s) 65, 164, 349, 470, 503, 688, 739, 820
AluI AGCT 8 cut(s) 65, 164, 349, 470, 503, 688, 739, 820
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 2 cut(s) 43, 519
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 503
ApeKI GCWGC 4 cut(s) 503, 533, 548, 736
ApoI RAATTY 3 cut(s) 199, 473, 621
AsuHPI GGTGA 2 cut(s) 497, 803
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 4 cut(s) 490, 520, 535, 748
BceAI ACGGC 1 cut(s) 662
BclI TGATCA 2 cut(s) 508, 700
BcoDI GTCTC 2 cut(s) 43, 519
BfaI CTAG 1 cut(s) 779
BglI GCCNNNNNGGC 1 cut(s) 530
BglII AGATCT 1 cut(s) 772
BisI GCNGC 4 cut(s) 504, 534, 549, 737
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 4 cut(s) 505, 535, 550, 738
BmsI GCATC 1 cut(s) 664
BpiI GAAGAC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 657
BsaBI GATNNNNATC 2 cut(s) 390, 456
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 2 cut(s) 390, 456
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 178, 571
BseJI GATNNNNATC 2 cut(s) 390, 456
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 5 cut(s) 546, 627, 675, 757, 783
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 386, 801
BseXI GCAGC 4 cut(s) 490, 520, 535, 748
BseYI CCCAGC 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 639
BsmAI GTCTC 2 cut(s) 43, 519
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 6 cut(s) 255, 490, 508, 649, 700, 772
Bsp1720I GCTNAGC 1 cut(s) 657
BspACI CCGC 1 cut(s) 253
BspCNI CTCAG 5 cut(s) 547, 628, 676, 756, 782
BspPI GGATC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 255, 490, 508, 649, 700, 772
BssNI GRCGYC 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 187, 427, 437, 695
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 351, 646, 663
BstDEI CTNAG 7 cut(s) 165, 555, 636, 657, 684, 743, 769
BstDSI CCRYGG 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 178, 571
BstKTI GATC 6 cut(s) 258, 493, 511, 652, 703, 775
BstMAI GTCTC 2 cut(s) 43, 519
BstMBI GATC 6 cut(s) 255, 490, 508, 649, 700, 772
BstMWI GCNNNNNNNGC 5 cut(s) 110, 119, 242, 530, 662
BstNSI RCATGY 3 cut(s) 331, 373, 648
BstV1I GCAGC 4 cut(s) 490, 520, 535, 748
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 255, 772
BstYI RGATCY 2 cut(s) 255, 772
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 178, 571
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 3 cut(s) 351, 646, 663
CaiI CAGNNNCTG 1 cut(s) 503
CseI GACGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 325
CviAII CATG 6 cut(s) 92, 101, 249, 328, 370, 645
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 7 cut(s) 165, 555, 636, 657, 684, 743, 769
DpnI GATC 6 cut(s) 257, 492, 510, 651, 702, 774
DpnII GATC 6 cut(s) 255, 490, 508, 649, 700, 772
DraIII CACNNNGTG 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 473
FaeI CATG 6 cut(s) 95, 104, 252, 331, 373, 648
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FatI CATG 6 cut(s) 91, 100, 248, 327, 369, 644
FauNDI CATATG 1 cut(s) 667
FbaI TGATCA 2 cut(s) 508, 700
Fnu4HI GCNGC 4 cut(s) 504, 534, 549, 737
FokI GGATG 2 cut(s) 185, 558
Fsp4HI GCNGC 4 cut(s) 504, 534, 549, 737
FspBI CTAG 1 cut(s) 779
GluI GCNGC 4 cut(s) 504, 534, 549, 737
GsaI CCCAGC 1 cut(s) 820
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 6 cut(s) 95, 104, 252, 331, 373, 648
HinfI GANTC 5 cut(s) 88, 419, 707, 751, 812
HphI GGTGA 2 cut(s) 497, 803
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 6 cut(s) 46, 556, 581, 597, 637, 772
Hpy188III TCNNGA 3 cut(s) 698, 704, 779
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 234, 271, 411
HpyCH4III ACNGT 4 cut(s) 187, 427, 437, 695
HpyCH4V TGCA 4 cut(s) 331, 353, 363, 736
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 119, 242, 530, 662
HpyF3I CTNAG 7 cut(s) 165, 555, 636, 657, 684, 743, 769
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 6 cut(s) 95, 104, 252, 331, 373, 648
Ksp22I TGATCA 2 cut(s) 508, 700
Kzo9I GATC 6 cut(s) 255, 490, 508, 649, 700, 772
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 67, 118, 399, 550, 647, 730, 806
Lsp1109I GCAGC 4 cut(s) 490, 520, 535, 748
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 779
MaeIII GTNAC 1 cut(s) 679
MalI GATC 6 cut(s) 257, 492, 510, 651, 702, 774
MboI GATC 6 cut(s) 255, 490, 508, 649, 700, 772
MboII GAAGA 5 cut(s) 203, 255, 353, 396, 767
MflI RGATCY 2 cut(s) 255, 772
MhlI GDGCHC 1 cut(s) 798
MluCI AATT 5 cut(s) 179, 199, 357, 473, 621
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 150
MseI TTAA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 820
MwoI GCNNNNNNNGC 5 cut(s) 110, 119, 242, 530, 662
NdeI CATATG 1 cut(s) 667
NdeII GATC 6 cut(s) 255, 490, 508, 649, 700, 772
NlaIII CATG 6 cut(s) 95, 104, 252, 331, 373, 648
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 679
NspI RCATGY 3 cut(s) 331, 373, 648
PaeI GCATGC 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 419, 707, 751, 812
PkrI GCNGC 4 cut(s) 505, 535, 550, 738
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 816
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 255, 772
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 4 cut(s) 504, 534, 549, 737
Sau3AI GATC 6 cut(s) 255, 490, 508, 649, 700, 772
SchI GAGTC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 798
SetI ASST 9 cut(s) 67, 166, 351, 472, 505, 690, 741, 793, 822
SfaNI GCATC 1 cut(s) 664
SphI GCATGC 1 cut(s) 648
Sse9I AATT 5 cut(s) 179, 199, 357, 473, 621
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 779
TaaI ACNGT 4 cut(s) 187, 427, 437, 695
TaqI TCGA 2 cut(s) 339, 410
TasI AATT 5 cut(s) 179, 199, 357, 473, 621
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 4 cut(s) 419, 707, 751, 812
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 4 cut(s) 503, 533, 548, 736
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 3 cut(s) 396, 458, 825
TspRI CASTG 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 637
XapI RAATTY 3 cut(s) 199, 473, 621
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 3 cut(s) 331, 373, 648
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.