Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010914.1

Orthogroup ID

OG0010696

Physical Location & Seq

Genomic Coordinates Reverse (-)

29651 .. 32838

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010914.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggagaaggatagggagagccatgtttaccgggccaaacttgctgagcaagccgaaagatatgatgaaattattgaagtaatgaaaaaagttgctaagctggatgtggaattgaccgtggatgagcgaaatttgttgtctgttgggtataagaatgtgattggggcaagaagggcatcatggcggatattgtcttccattgaacagaaggaggaggccaagggaaatgagcagaatgtgaagcgaataaaggagtacatgaaaagggttgaagatgagctggcaattatttgcaaggacatgttatcagtgattgattatcacctcctcccttcttcatcaaccggggaatcgactgtattctaccataagatgaaaggagattactatcgttatttagctgaattcaaagcaggtgatgatcgtgcagaagctgctgatcagtcgcttaaagcctatgaggctgccagtagtagtgcggcctctcagttgcccccaactcatccaatcagactgggccttgctctgaactactcagtcttttactatgaaattcttaaatcctctgagagggcatgcgatcttgctaagcaggcatttgatgatgccgctgctgagattgacagtcttgatcaagaatcctacaaggacagcaccctcattatgcagcttcttagggataatctcacattgtggaactcggatctgccggagggaggaggtgagcaccctaaggttgatcaatcccagccggagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

253

Amino Acids

28.79

Weight (kDa)

5.09

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22300 AT1G22300 AT1G22300 AT1G34760 AT1G34760
fragaria_vesca	FvH4_5g37150
malus_domestica	MD08G1184000.v1.1 MD15G1370500.v1.1
prunus_persica	Prupe.1G518200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0238741
rosa_laevigata	RLG00000000816
rosa_multiflora	Rmu_sc0010914.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221590
rosa_rugosa	Rorug07G0323200.1 Rorug07G0323300.1
rosa_samantha	Rh7AG477600 Rh7BG448900 Rh7CG495600 Rh7DG462600
rosa_wichuraiana	Rw7G039860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	3 cut(s)	184, 479, 609
AclWI	GGATC	1 cut(s)	711
AcsI	RAATTY	3 cut(s)	130, 404, 552
AdeI	CACNNNGTG	1 cut(s)	693
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	570, 716
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	4 cut(s)	77, 203, 272, 409
AluBI	AGCT	5 cut(s)	100, 280, 401, 434, 670
AluI	AGCT	5 cut(s)	100, 280, 401, 434, 670
Alw21I	GWGCWC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	711
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	4 cut(s)	33, 216, 480, 517
ApeKI	GCWGC	4 cut(s)	434, 464, 611, 667
ApoI	RAATTY	3 cut(s)	130, 404, 552
AspS9I	GGNCC	2 cut(s)	33, 517
AsuC2I	CCSGG	2 cut(s)	32, 346
AsuHPI	GGTGA	3 cut(s)	314, 428, 734
AxyI	CCTNAGG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	4 cut(s)	421, 451, 598, 679
BclI	TGATCA	3 cut(s)	439, 631, 739
BcnI	CCSGG	2 cut(s)	32, 346
BfuAI	ACCTGC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	6 cut(s)	435, 465, 480, 609, 612, 668
BlpI	GCTNAGC	3 cut(s)	45, 96, 588
BlsI	GCNGC	6 cut(s)	436, 466, 481, 610, 613, 669
Bme1390I	CCNGG	2 cut(s)	32, 346
BmgT120I	GGNCC	2 cut(s)	33, 517
BmrFI	CCNGG	2 cut(s)	32, 346
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	185, 595
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	186
Bpu1102I	GCTNAGC	3 cut(s)	45, 96, 588
BpuMI	CCSGG	2 cut(s)	32, 346
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	117, 219, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 716
Bse1I	ACTGG	2 cut(s)	468, 519
Bse21I	CCTNAGG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	117, 219, 345
BseGI	GGATG	3 cut(s)	109, 127, 502
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	570, 716
BseMII	CTCAG	5 cut(s)	36, 500, 549, 558, 606
BseNI	ACTGG	2 cut(s)	468, 519
BseRI	GAGGAG	3 cut(s)	227, 317, 732
BseXI	GCAGC	4 cut(s)	421, 451, 598, 679
BseYI	CCCAGC	1 cut(s)	747
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	4 cut(s)	35, 218, 482, 519
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	4 cut(s)	31, 345, 710, 752
BslI	CCNNNNNNNGG	2 cut(s)	570, 716
BsnI	GGCC	4 cut(s)	35, 218, 482, 519
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
Bsp1720I	GCTNAGC	3 cut(s)	45, 96, 588
BspACI	CCGC	3 cut(s)	184, 479, 609
BspANI	GGCC	4 cut(s)	35, 218, 482, 519
BspCNI	CTCAG	5 cut(s)	37, 499, 548, 559, 607
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	468, 519
BssECI	CCNNGG	3 cut(s)	117, 219, 345
BssMI	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	118, 358, 626
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	4 cut(s)	51, 282, 577, 594
BstDEI	CTNAG	9 cut(s)	45, 96, 486, 535, 567, 588, 615, 674, 732
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	109, 127, 502
BstKTI	GATC	6 cut(s)	424, 442, 583, 634, 706, 742
BstMBI	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 50, 173, 434, 461, 593
BstNSI	RCATGY	2 cut(s)	304, 579
BstSCI	CCNGG	2 cut(s)	30, 344
BstV1I	GCAGC	4 cut(s)	421, 451, 598, 679
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	4 cut(s)	35, 218, 482, 519
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	109, 127, 502
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	51, 282, 577, 594
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	33, 517
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	5 cut(s)	23, 180, 259, 301, 576
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	9 cut(s)	45, 96, 486, 535, 567, 588, 615, 674, 732
DpnI	GATC	6 cut(s)	423, 441, 582, 633, 705, 741
DpnII	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
DraIII	CACNNNGTG	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	26, 183, 262, 304, 579
FatI	CATG	5 cut(s)	22, 179, 258, 300, 575
FbaI	TGATCA	3 cut(s)	439, 631, 739
Fnu4HI	GCNGC	6 cut(s)	435, 465, 480, 609, 612, 668
FokI	GGATG	3 cut(s)	116, 134, 489
Fsp4HI	GCNGC	6 cut(s)	435, 465, 480, 609, 612, 668
GluI	GCNGC	6 cut(s)	435, 465, 480, 609, 612, 668
GsaI	CCCAGC	1 cut(s)	751
HaeIII	GGCC	4 cut(s)	35, 218, 482, 519
HapII	CCGG	4 cut(s)	31, 345, 710, 752
Hin1II	CATG	5 cut(s)	26, 183, 262, 304, 579
HinfI	GANTC	2 cut(s)	350, 638
HpaII	CCGG	4 cut(s)	31, 345, 710, 752
HphI	GGTGA	3 cut(s)	314, 428, 734
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	512, 528, 568, 703
Hpy188III	TCNNGA	2 cut(s)	629, 635
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	165, 202, 342
HpyCH4III	ACNGT	3 cut(s)	118, 358, 626
HpyCH4V	TGCA	3 cut(s)	294, 428, 667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 50, 173, 434, 461, 593
HpyF3I	CTNAG	9 cut(s)	45, 96, 486, 535, 567, 588, 615, 674, 732
Hsp92II	CATG	5 cut(s)	26, 183, 262, 304, 579
Ksp22I	TGATCA	3 cut(s)	439, 631, 739
Kzo9I	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
LpnPI	CCDG	9 cut(s)	44, 86, 266, 358, 399, 481, 500, 578, 723
Lsp1109I	GCAGC	4 cut(s)	421, 451, 598, 679
LweI	GCATC	2 cut(s)	185, 595
MalI	GATC	6 cut(s)	423, 441, 582, 633, 705, 741
MboI	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
MboII	GAAGA	3 cut(s)	186, 284, 327
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	6 cut(s)	69, 110, 130, 285, 404, 552
MseI	TTAA	2 cut(s)	450, 558
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	4 cut(s)	31, 345, 710, 752
MspR9I	CCNGG	2 cut(s)	32, 346
MwoI	GCNNNNNNNGC	6 cut(s)	41, 50, 173, 434, 461, 593
NciI	CCSGG	2 cut(s)	32, 346
NdeII	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
NlaIII	CATG	5 cut(s)	26, 183, 262, 304, 579
NspI	RCATGY	2 cut(s)	304, 579
PaeI	GCATGC	1 cut(s)	579
PaqCI	CACCTGC	1 cut(s)	404
PciI	ACATGT	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	350, 638
PkrI	GCNGC	6 cut(s)	436, 466, 481, 610, 613, 669
PscI	ACATGT	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	33, 517
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	450, 558
SatI	GCNGC	6 cut(s)	435, 465, 480, 609, 612, 668
Sau3AI	GATC	6 cut(s)	421, 439, 580, 631, 703, 739
Sau96I	GGNCC	2 cut(s)	33, 517
ScrFI	CCNGG	2 cut(s)	32, 346
SduI	GDGCHC	1 cut(s)	729
SetI	ASST	9 cut(s)	102, 282, 327, 403, 418, 436, 672, 724, 738
SfaNI	GCATC	2 cut(s)	185, 595
SphI	GCATGC	1 cut(s)	579
Sse9I	AATT	6 cut(s)	69, 110, 130, 285, 404, 552
SsiI	CCGC	3 cut(s)	184, 479, 609
StyD4I	CCNGG	2 cut(s)	30, 344
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	118, 358, 626
TaqI	TCGA	1 cut(s)	353
TasI	AATT	6 cut(s)	69, 110, 130, 285, 404, 552
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	2 cut(s)	482, 611
TfiI	GAWTC	2 cut(s)	350, 638
Tru1I	TTAA	2 cut(s)	450, 558
Tru9I	TTAA	2 cut(s)	450, 558
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	4 cut(s)	434, 464, 611, 667
TspDTI	ATGAA	6 cut(s)	81, 98, 275, 327, 389, 564
TspRI	CASTG	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	3 cut(s)	130, 404, 552
XceI	RCATGY	2 cut(s)	304, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.