Rw7G039860

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010696
Physical Location & Seq
Forward (+)
61539135 .. 61542318
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039860.1

Sequence Viewer

Length: 762 bp
ATGGAGAAGGATAGGGAGAGCCATGTTTACCGGGCCAAACTTGCTGAGCAAGCCGAAAGATATGATGAAATTATTGAAGTAATGAAAAAAGTTGCTAAGCTGGATGTGGAATTGACCGTGGATGAGCGAAATTTGTTGTCTGTTGGGTATAAGAATGTGATTGGGGCAAGAAGGGCATCATGGCGGATATTGTCTTCCATTGAACAGAAGGAGGAGGCCAAGCGAAATGAGCAGAATGTGAAGCGAATAAAGGAGTACATGAAAAGGGTTGAAGATGAGCTTGCAATTATTTGCAAGGACATGTTATCAGTGATTGATTATCACCTCCTCCCTTCTTCATCAACCGGGGAATCGACTGTATTCTACCATAAGATGAAAGGAGATTACTATCGTTATTTAGCTGAATTCAAAGCAGGTGATGATCGTGCAGAAGCTGCTGATCAGTCGCTTAAAGCCTATGAGGCTGCCAGTAGTAGTGCGGCCTCTCAGTTGCCCCCAACTCATCCAATCAGACTGGGCCTTGCTCTGAACTACTCGGTCTTTTACTATGAAATTCTTAAATCCTCTGAGAGGGCATGCGATCTTGCTAAGCAGGCATTTGATGATGCCGCTGCTGAGATTGACAGTCTTGATCAAGAATCCTACAAGGACAGCACCCTCATTATGCAGCTTCTTAGGGATAATCTCACATTGTGGAACTCGGATCTGCCGGAGGGAGGAGGTGAGCACCCTAAGGTTGATCAATCCCAGCCGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

253

Amino Acids

28.88

Weight (kDa)

5.16

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 12 - 233 6.2e-102 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010696)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22300 AT1G22300 AT1G22300 AT1G34760 AT1G34760
fragaria_vesca FvH4_5g37150
malus_domestica MD08G1184000.v1.1 MD15G1370500.v1.1
prunus_persica Prupe.1G518200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238741
rosa_laevigata RLG00000000816
rosa_multiflora Rmu_sc0010914.1_g000010
rosa_roxburghii Rroxscaffold_3G00221590
rosa_rugosa Rorug07G0323200.1 Rorug07G0323300.1
rosa_samantha Rh7AG477600 Rh7BG448900 Rh7CG495600 Rh7DG462600
rosa_wichuraiana Rw7G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 3 cut(s) 184, 479, 609
AclWI GGATC 1 cut(s) 711
AcsI RAATTY 3 cut(s) 130, 404, 552
AdeI CACNNNGTG 1 cut(s) 693
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 570, 716
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 4 cut(s) 77, 203, 272, 409
AluBI AGCT 5 cut(s) 100, 280, 401, 434, 670
AluI AGCT 5 cut(s) 100, 280, 401, 434, 670
Alw21I GWGCWC 1 cut(s) 729
AlwI GGATC 1 cut(s) 711
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 4 cut(s) 33, 216, 480, 517
ApeKI GCWGC 4 cut(s) 434, 464, 611, 667
ApoI RAATTY 3 cut(s) 130, 404, 552
AspS9I GGNCC 2 cut(s) 33, 517
AsuC2I CCSGG 2 cut(s) 32, 346
AsuHPI GGTGA 3 cut(s) 314, 428, 734
AxyI CCTNAGG 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 4 cut(s) 421, 451, 598, 679
BclI TGATCA 3 cut(s) 439, 631, 739
BcnI CCSGG 2 cut(s) 32, 346
BfuAI ACCTGC 1 cut(s) 404
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 6 cut(s) 435, 465, 480, 609, 612, 668
BlpI GCTNAGC 3 cut(s) 45, 96, 588
BlsI GCNGC 6 cut(s) 436, 466, 481, 610, 613, 669
Bme1390I CCNGG 2 cut(s) 32, 346
BmgT120I GGNCC 2 cut(s) 33, 517
BmrFI CCNGG 2 cut(s) 32, 346
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 185, 595
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 186
Bpu1102I GCTNAGC 3 cut(s) 45, 96, 588
BpuMI CCSGG 2 cut(s) 32, 346
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 117, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 716
Bse1I ACTGG 2 cut(s) 468, 519
Bse21I CCTNAGG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 117, 345
BseGI GGATG 3 cut(s) 109, 127, 502
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 570, 716
BseMII CTCAG 4 cut(s) 36, 500, 558, 606
BseNI ACTGG 2 cut(s) 468, 519
BseRI GAGGAG 3 cut(s) 227, 317, 732
BseXI GCAGC 4 cut(s) 421, 451, 598, 679
BseYI CCCAGC 1 cut(s) 747
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 4 cut(s) 35, 218, 482, 519
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 4 cut(s) 31, 345, 710, 752
BslI CCNNNNNNNGG 2 cut(s) 570, 716
BsnI GGCC 4 cut(s) 35, 218, 482, 519
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 6 cut(s) 421, 439, 580, 631, 703, 739
Bsp1720I GCTNAGC 3 cut(s) 45, 96, 588
BspACI CCGC 3 cut(s) 184, 479, 609
BspANI GGCC 4 cut(s) 35, 218, 482, 519
BspCNI CTCAG 4 cut(s) 37, 499, 559, 607
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 1 cut(s) 711
BsrI ACTGG 2 cut(s) 468, 519
BssECI CCNNGG 2 cut(s) 117, 345
BssMI GATC 6 cut(s) 421, 439, 580, 631, 703, 739
Bst4CI ACNGT 3 cut(s) 118, 358, 626
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 4 cut(s) 51, 282, 577, 594
BstDEI CTNAG 8 cut(s) 45, 96, 486, 567, 588, 615, 674, 732
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 568
BstF5I GGATG 3 cut(s) 109, 127, 502
BstKTI GATC 6 cut(s) 424, 442, 583, 634, 706, 742
BstMBI GATC 6 cut(s) 421, 439, 580, 631, 703, 739
BstMWI GCNNNNNNNGC 7 cut(s) 41, 50, 173, 229, 434, 461, 593
BstNSI RCATGY 2 cut(s) 304, 579
BstSCI CCNGG 2 cut(s) 30, 344
BstV1I GCAGC 4 cut(s) 421, 451, 598, 679
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 4 cut(s) 35, 218, 482, 519
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 109, 127, 502
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 4 cut(s) 51, 282, 577, 594
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 33, 517
Csp6I GTAC 1 cut(s) 256
CviAII CATG 5 cut(s) 23, 180, 259, 301, 576
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 8 cut(s) 45, 96, 486, 567, 588, 615, 674, 732
DpnI GATC 6 cut(s) 423, 441, 582, 633, 705, 741
DpnII GATC 6 cut(s) 421, 439, 580, 631, 703, 739
DraIII CACNNNGTG 1 cut(s) 693
EciI GGCGGA 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 404
FaeI CATG 5 cut(s) 26, 183, 262, 304, 579
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 5 cut(s) 22, 179, 258, 300, 575
FbaI TGATCA 3 cut(s) 439, 631, 739
Fnu4HI GCNGC 6 cut(s) 435, 465, 480, 609, 612, 668
FokI GGATG 3 cut(s) 116, 134, 489
Fsp4HI GCNGC 6 cut(s) 435, 465, 480, 609, 612, 668
GluI GCNGC 6 cut(s) 435, 465, 480, 609, 612, 668
GsaI CCCAGC 1 cut(s) 751
HaeIII GGCC 4 cut(s) 35, 218, 482, 519
HapII CCGG 4 cut(s) 31, 345, 710, 752
Hin1II CATG 5 cut(s) 26, 183, 262, 304, 579
HinfI GANTC 2 cut(s) 350, 638
HpaII CCGG 4 cut(s) 31, 345, 710, 752
HphI GGTGA 3 cut(s) 314, 428, 734
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 512, 528, 568, 703
Hpy188III TCNNGA 2 cut(s) 629, 635
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 165, 202, 342
HpyCH4III ACNGT 3 cut(s) 118, 358, 626
HpyCH4V TGCA 4 cut(s) 284, 294, 428, 667
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 50, 173, 229, 434, 461, 593
HpyF3I CTNAG 8 cut(s) 45, 96, 486, 567, 588, 615, 674, 732
Hsp92II CATG 5 cut(s) 26, 183, 262, 304, 579
Ksp22I TGATCA 3 cut(s) 439, 631, 739
Kzo9I GATC 6 cut(s) 421, 439, 580, 631, 703, 739
LpnPI CCDG 8 cut(s) 44, 86, 358, 399, 481, 500, 578, 723
Lsp1109I GCAGC 4 cut(s) 421, 451, 598, 679
LweI GCATC 2 cut(s) 185, 595
MalI GATC 6 cut(s) 423, 441, 582, 633, 705, 741
MboI GATC 6 cut(s) 421, 439, 580, 631, 703, 739
MboII GAAGA 3 cut(s) 186, 284, 327
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 6 cut(s) 69, 110, 130, 285, 404, 552
MseI TTAA 2 cut(s) 450, 558
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 4 cut(s) 31, 345, 710, 752
MspR9I CCNGG 2 cut(s) 32, 346
MwoI GCNNNNNNNGC 7 cut(s) 41, 50, 173, 229, 434, 461, 593
NciI CCSGG 2 cut(s) 32, 346
NdeII GATC 6 cut(s) 421, 439, 580, 631, 703, 739
NlaIII CATG 5 cut(s) 26, 183, 262, 304, 579
NspI RCATGY 2 cut(s) 304, 579
PaeI GCATGC 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 404
PciI ACATGT 1 cut(s) 300
PfeI GAWTC 2 cut(s) 350, 638
PkrI GCNGC 6 cut(s) 436, 466, 481, 610, 613, 669
PscI ACATGT 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 747
PspPI GGNCC 2 cut(s) 33, 517
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 450, 558
SatI GCNGC 6 cut(s) 435, 465, 480, 609, 612, 668
Sau3AI GATC 6 cut(s) 421, 439, 580, 631, 703, 739
Sau96I GGNCC 2 cut(s) 33, 517
ScrFI CCNGG 2 cut(s) 32, 346
SduI GDGCHC 1 cut(s) 729
SetI ASST 9 cut(s) 102, 282, 327, 403, 418, 436, 672, 724, 738
SfaNI GCATC 2 cut(s) 185, 595
SphI GCATGC 1 cut(s) 579
Sse9I AATT 6 cut(s) 69, 110, 130, 285, 404, 552
SsiI CCGC 3 cut(s) 184, 479, 609
StyD4I CCNGG 2 cut(s) 30, 344
TaaI ACNGT 3 cut(s) 118, 358, 626
TaqI TCGA 1 cut(s) 353
TaqII GACCGA 1 cut(s) 526
TasI AATT 6 cut(s) 69, 110, 130, 285, 404, 552
TatI WGTACW 1 cut(s) 255
TauI GCSGC 2 cut(s) 482, 611
TfiI GAWTC 2 cut(s) 350, 638
Tru1I TTAA 2 cut(s) 450, 558
Tru9I TTAA 2 cut(s) 450, 558
TscAI CASTG 1 cut(s) 315
TseI GCWGC 4 cut(s) 434, 464, 611, 667
TspDTI ATGAA 6 cut(s) 81, 98, 275, 327, 389, 564
TspRI CASTG 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 568
XapI RAATTY 3 cut(s) 130, 404, 552
XceI RCATGY 2 cut(s) 304, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.