FvH4_5g37990

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016354
Physical Location & Seq
Forward (+)
28040974 .. 28042394
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37990.t1

Sequence Viewer

Length: 741 bp
ATGCTAAACTACCTGAGCCATTCTAGGAATGTCAAATGGAAAAAAACTTTAATTCTCACCCCATTCAGAACTCAAAAGAACATTGCTGATTTTCTTCACCAAGTGAAAAGTATCATCAAGAAAATTAACGAAAAGATGACAAGAATCGTTTTCCTTTTGTTCATTTTGGCCACATGGACTGCTTTGGCAAACTGTGCACGCCCTCATGTTCAGCCTTTAAATCCAGAAACAGATGAAATGAGATCTTCAACTGCACCATCAACCTCACCATCAAGCCCAGATTGCACGAAGGCGATTTATGCAATGTCAGATTGCATCCCTTTTTTGAGTGAAGGAATTCAAACCACATCGCCGGAACGTTCATGCTGCTCTGGATATGAAACTGTTGTCAAAAGTGGTCCTGTTTGCGTATGTCAATCCTTTGAGGGTACTGCTGCCATGGGTATCCGTTTGAATATGACAAAGGCCATGACTCTTTCTTCAGCTTGTGGGATCAAGAATGCTCCTCCCCTAGATAATTGTAATGTTCCTATGCCTCCTGGTACTGCTCCTGCAATGTCTCCAAAATGGGGGAGTCCATCTCCAAAATCACATCCGAAGTTCAATATAGTTCCTGCACCCTCAGTTGTCAAAGCTCCTATACAATCTCCAGCACCATCTCCAAGCTCGGGAGCGTATTCAATATCTGCTAAACTTGCCCTTACTGCTCTTAATATGCTCGGTGCTGCATTGTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

247

Amino Acids

26.35

Weight (kDa)

9.43

Isoelectric Point (pI)

63.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 83 - 170 1.1e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 95 - 168 3e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 358
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 2 cut(s) 430, 544
AfiI CCNNNNNNNGG 2 cut(s) 569, 668
AgsI TTSAA 5 cut(s) 249, 341, 454, 604, 681
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 3 cut(s) 485, 635, 666
AluI AGCT 3 cut(s) 485, 635, 666
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 564
Alw44I GTGCAC 1 cut(s) 195
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 667
AoxI GGCC 2 cut(s) 168, 465
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 366, 434, 725
ApoI RAATTY 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 49, 89, 258
AvaI CYCGRG 1 cut(s) 667
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 353, 421, 712
BccI CCATC 4 cut(s) 265, 277, 586, 664
BciT130I CCWGG 1 cut(s) 540
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 2 cut(s) 24, 512
BfuI GTATCC 1 cut(s) 455
BglII AGATCT 1 cut(s) 242
BisI GCNGC 3 cut(s) 367, 435, 726
BlsI GCNGC 3 cut(s) 368, 436, 727
Bme1390I CCNGG 1 cut(s) 540
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 667
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 668
Bse3DI GCAATG 3 cut(s) 81, 309, 561
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 315, 592
BseLI CCNNNNNNNGG 2 cut(s) 569, 668
BseMI GCAATG 3 cut(s) 81, 309, 561
BseMII CTCAG 2 cut(s) 5, 636
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 3 cut(s) 353, 421, 712
BsgI GTGCAG 2 cut(s) 237, 600
BshFI GGCC 2 cut(s) 170, 467
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 667
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 569, 668
BsmAI GTCTC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 2 cut(s) 170, 467
BsoBI CYCGRG 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 242, 492
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 2 cut(s) 170, 467
BspCNI CTCAG 2 cut(s) 6, 635
BspPI GGATC 1 cut(s) 500
BsrDI GCAATG 3 cut(s) 81, 309, 561
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 242, 492
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 194, 385
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 14, 622
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 315, 592
BstKTI GATC 2 cut(s) 245, 495
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 2 cut(s) 242, 492
BstMWI GCNNNNNNNGC 5 cut(s) 194, 282, 299, 695, 704
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 538
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 353, 421, 712
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 2 cut(s) 170, 467
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 315, 592
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 429, 543
CviAII CATG 5 cut(s) 174, 206, 363, 439, 469
CviJI RGCY 8 cut(s) 18, 170, 214, 276, 467, 485, 635, 666
CviKI_1 RGCY 8 cut(s) 18, 170, 214, 276, 467, 485, 635, 666
CviQI GTAC 2 cut(s) 429, 543
DdeI CTNAG 2 cut(s) 14, 622
DpnI GATC 2 cut(s) 244, 494
DpnII GATC 2 cut(s) 242, 492
DraI TTTAAA 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 5 cut(s) 177, 209, 366, 442, 472
FatI CATG 5 cut(s) 173, 205, 362, 438, 468
Fnu4HI GCNGC 3 cut(s) 367, 435, 726
FokI GGATG 2 cut(s) 302, 579
Fsp4HI GCNGC 3 cut(s) 367, 435, 726
FspBI CTAG 2 cut(s) 24, 512
GluI GCNGC 3 cut(s) 367, 435, 726
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 170, 467
HapII CCGG 1 cut(s) 353
Hin1II CATG 5 cut(s) 177, 209, 366, 442, 472
HinfI GANTC 3 cut(s) 144, 472, 574
HpaII CCGG 1 cut(s) 353
HphI GGTGA 3 cut(s) 49, 89, 258
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 68, 310, 597
Hpy188III TCNNGA 5 cut(s) 118, 224, 372, 496, 669
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 283, 326
HpyCH4III ACNGT 2 cut(s) 194, 385
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 8 cut(s) 197, 254, 285, 302, 315, 554, 617, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 282, 299, 695, 704
HpyF3I CTNAG 2 cut(s) 14, 622
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 5 cut(s) 177, 209, 366, 442, 472
Kzo9I GATC 2 cut(s) 242, 492
LmnI GCTCC 4 cut(s) 508, 553, 640, 671
Lsp1109I GCAGC 3 cut(s) 353, 421, 712
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 24, 512
MaeII ACGT 1 cut(s) 358
MalI GATC 2 cut(s) 244, 494
MboI GATC 2 cut(s) 242, 492
MboII GAAGA 3 cut(s) 86, 237, 471
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 4 cut(s) 51, 123, 336, 517
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 2 cut(s) 466, 583
MnlI CCTC 6 cut(s) 213, 274, 418, 516, 546, 631
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 1 cut(s) 170
MseI TTAA 4 cut(s) 50, 126, 218, 711
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 540
MwoI GCNNNNNNNGC 5 cut(s) 194, 282, 299, 695, 704
NcoI CCATGG 1 cut(s) 438
NdeII GATC 2 cut(s) 242, 492
NlaIII CATG 5 cut(s) 177, 209, 366, 442, 472
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 368, 436, 727
PleI GAGTC 2 cut(s) 466, 582
PpsI GAGTC 2 cut(s) 466, 582
Psp1406I AACGTT 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 2 cut(s) 430, 544
RsaNI GTAC 2 cut(s) 429, 543
SaqAI TTAA 4 cut(s) 50, 126, 218, 711
SatI GCNGC 3 cut(s) 367, 435, 726
Sau3AI GATC 2 cut(s) 242, 492
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 466, 583
ScrFI CCNGG 1 cut(s) 540
SduI GDGCHC 1 cut(s) 199
SetI ASST 6 cut(s) 15, 266, 361, 487, 637, 668
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 398
Sse9I AATT 4 cut(s) 51, 123, 336, 517
SspMI CTAG 2 cut(s) 24, 512
StyD4I CCNGG 1 cut(s) 538
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 194, 385
TaiI ACGT 1 cut(s) 361
TasI AATT 4 cut(s) 51, 123, 336, 517
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 4 cut(s) 50, 126, 218, 711
Tru9I TTAA 4 cut(s) 50, 126, 218, 711
TseI GCWGC 3 cut(s) 366, 434, 725
TspDTI ATGAA 4 cut(s) 151, 249, 351, 393
TspGWI ACGGA 1 cut(s) 437
VneI GTGCAC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 2 cut(s) 24, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.