Rroxscaffold_3G00220670

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016354
Physical Location & Seq
Reverse (-)
3001751 .. 3003186
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220670.1

Sequence Viewer

Length: 612 bp
ATGACAAGAATCGTTTTTCTTTCATTCATTTTGGCCACATGGACTGTTTTGGCAAACTGTGGGCGCCCTCATGTTCAACCTTTAATTCCAGAACCAGAAGAAATAAAATCTTCAAGTGCACCATCAACCTCATCGTCAAGCTCAGATTGCTCTAAGGTGATTCATGCGATGTCAGATTGTATCCCTTTTTTGAGTGATGGAATCAAAACCACAACGCCTGAAGGTTCATGCTGCTCTGGATTTGAAACTGTGGTCAAAACTGGTCCTGATTGCGGATGTAAATTCTTTGAGAGTACTGCTAACCTGGGTATCCATTTGAATATGACAAAGGCCATGACACTTTCTTCGGCATGTGGGATCAATAATGCTCCTCCTCTAACTAATTGTGACGTTCCCATGCCTCCTGGTACTGCTTTTCCTGCCAAGTCTCCAAAATCGGGGAGTACTTCACCTCCAAAATCACATCCAAAGATCAATATAGTTCCTGCACCCTCAGTTGTCACAGCTCCAGTACAATCTCCAGTACCATCTCCAAGCTCTGGAGCTTACTCAATATCTGCTAAACTCGCCCTTACTGCTCTTAGTATGCTTGGTGCTGCTTCATTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

203

Amino Acids

20.85

Weight (kDa)

8.08

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 39 - 125 4e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 50 - 129 4.3e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 539
AciI CCGC 1 cut(s) 273
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 5 cut(s) 295, 409, 445, 513, 525
AfiI CCNNNNNNNGG 3 cut(s) 272, 437, 539
AgsI TTSAA 4 cut(s) 77, 114, 245, 319
AjnI CCWGG 2 cut(s) 303, 403
AluBI AGCT 4 cut(s) 141, 506, 537, 545
AluI AGCT 4 cut(s) 141, 506, 537, 545
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 432
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 1 cut(s) 365
AoxI GGCC 2 cut(s) 33, 330
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 231, 596
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 169, 441
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 218, 583
BccI CCATC 3 cut(s) 130, 191, 535
BciT130I CCWGG 2 cut(s) 305, 405
BciVI GTATCC 2 cut(s) 191, 320
BcoDI GTCTC 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 67
BfuI GTATCC 2 cut(s) 191, 320
BisI GCNGC 2 cut(s) 232, 597
BlsI GCNGC 2 cut(s) 233, 598
BmcAI AGTACT 2 cut(s) 295, 445
Bme1390I CCNGG 2 cut(s) 305, 405
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 305, 405
BpmI CTGGAG 3 cut(s) 492, 504, 561
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 437, 539
Bse1I ACTGG 3 cut(s) 265, 509, 521
BseBI CCWGG 2 cut(s) 305, 405
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 281, 463
BseLI CCNNNNNNNGG 3 cut(s) 272, 437, 539
BseMII CTCAG 2 cut(s) 156, 507
BseNI ACTGG 3 cut(s) 265, 509, 521
BseRI GAGGAG 2 cut(s) 360, 363
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 2 cut(s) 218, 583
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 2 cut(s) 35, 332
BshNI GGYRCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 272, 437, 539
BsmAI GTCTC 1 cut(s) 432
BsnI GGCC 2 cut(s) 35, 332
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 357, 471
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 35, 332
BspCNI CTCAG 2 cut(s) 155, 506
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 63
BsrI ACTGG 3 cut(s) 265, 509, 521
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 357, 471
BssNI GRCGYC 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 305, 405
Bst4CI ACNGT 3 cut(s) 46, 59, 250
BstACI GRCGYC 1 cut(s) 64
BstDEI CTNAG 4 cut(s) 142, 153, 493, 581
BstF5I GGATG 2 cut(s) 281, 463
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 360, 474
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 2 cut(s) 357, 471
BstMWI GCNNNNNNNGC 4 cut(s) 147, 419, 566, 575
BstNI CCWGG 2 cut(s) 305, 405
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 303, 403
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 218, 583
BsuI GTATCC 2 cut(s) 191, 320
BsuRI GGCC 2 cut(s) 35, 332
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 281, 463
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 5 cut(s) 294, 408, 444, 512, 524
CviAII CATG 7 cut(s) 39, 71, 164, 228, 334, 351, 397
CviJI RGCY 6 cut(s) 35, 141, 332, 506, 537, 545
CviKI_1 RGCY 6 cut(s) 35, 141, 332, 506, 537, 545
CviQI GTAC 5 cut(s) 294, 408, 444, 512, 524
DdeI CTNAG 4 cut(s) 142, 153, 493, 581
DinI GGCGCC 1 cut(s) 65
DpnI GATC 2 cut(s) 359, 473
DpnII GATC 2 cut(s) 357, 471
EaeI YGGCCR 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 303, 403
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
FaeI CATG 7 cut(s) 42, 74, 167, 231, 337, 354, 400
FatI CATG 7 cut(s) 38, 70, 163, 227, 333, 350, 396
Fnu4HI GCNGC 2 cut(s) 232, 597
FokI GGATG 2 cut(s) 288, 450
Fsp4HI GCNGC 2 cut(s) 232, 597
GlaI GCGC 1 cut(s) 65
GluI GCNGC 2 cut(s) 232, 597
GsuI CTGGAG 3 cut(s) 492, 504, 561
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 2 cut(s) 35, 332
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 7 cut(s) 42, 74, 167, 231, 337, 354, 400
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 3 cut(s) 9, 160, 201
HphI GGTGA 2 cut(s) 169, 441
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 145, 175
Hpy188III TCNNGA 4 cut(s) 89, 237, 266, 540
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 46, 59, 250
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 119, 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 419, 566, 575
HpyF3I CTNAG 4 cut(s) 142, 153, 493, 581
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 7 cut(s) 42, 74, 167, 231, 337, 354, 400
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 357, 471
LmnI GCTCC 3 cut(s) 373, 511, 542
Lsp1109I GCAGC 2 cut(s) 218, 583
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 386, 499
MalI GATC 2 cut(s) 359, 473
MboI GATC 2 cut(s) 357, 471
MboII GAAGA 3 cut(s) 102, 110, 336
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 84, 281, 382
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 64
MnlI CCTC 7 cut(s) 78, 139, 381, 384, 411, 462, 502
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 305, 405
MvaI CCWGG 2 cut(s) 305, 405
MwoI GCNNNNNNNGC 4 cut(s) 147, 419, 566, 575
NarI GGCGCC 1 cut(s) 64
NdeII GATC 2 cut(s) 357, 471
NlaIII CATG 7 cut(s) 42, 74, 167, 231, 337, 354, 400
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 386, 499
NspI RCATGY 1 cut(s) 354
PfeI GAWTC 3 cut(s) 9, 160, 201
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 2 cut(s) 233, 598
PluTI GGCGCC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 303, 403
PspGI CCWGG 2 cut(s) 303, 403
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 5 cut(s) 295, 409, 445, 513, 525
RsaNI GTAC 5 cut(s) 294, 408, 444, 512, 524
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 232, 597
Sau3AI GATC 2 cut(s) 357, 471
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 2 cut(s) 295, 445
ScrFI CCNGG 2 cut(s) 305, 405
SduI GDGCHC 1 cut(s) 121
SfoI GGCGCC 1 cut(s) 65
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 84, 281, 382
SsiI CCGC 1 cut(s) 273
SspDI GGCGCC 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 303, 403
TaaI ACNGT 3 cut(s) 46, 59, 250
TaiI ACGT 1 cut(s) 393
TasI AATT 3 cut(s) 84, 281, 382
TatI WGTACW 3 cut(s) 293, 443, 511
TfiI GAWTC 3 cut(s) 9, 160, 201
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 2 cut(s) 386, 499
TseI GCWGC 2 cut(s) 231, 596
Tsp45I GTSAC 2 cut(s) 386, 499
TspDTI ATGAA 5 cut(s) 12, 16, 152, 216, 591
Van91I CCANNNNNTGG 1 cut(s) 539
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 354
ZrmI AGTACT 2 cut(s) 295, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.