Rorug07G0331200

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016354
Physical Location & Seq
Reverse (-)
36269550 .. 36271429
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0331200.1

Sequence Viewer

Length: 822 bp
ATGTTGTACATAGTAGGTCTTGGATTGGGGAACGAGAAAGACATCACTTTGAGAGGTTTAGAAGCAGTTCAACAATGTGACAAGATCTTCGTTGAAGCCTACACTTCTCTCCTCTCTTTTGGTCTCTCTTCCCACGGTCTTATCACCCTTGAAAAGTTGTATGGGAAACCGGTTATACTTGCAGATAGAGAAACCGTGGAGGAAAAGGCCGATGGTATTTTAAGTGCAGCCGCTGATTCTGACGTCGCTTTTCTTGTTGTTGGGGATCCTTTTGGAGCTACAACTCACACTGATCTTGTAGTTCGAGCTAAGAAGTTAGGGATTAATGTCAAAGTGGTGCATAATGCATCGGTTATGAATGCGGTTGGAGTCTGTGGCTTGCAGCTCTACCATTATGGAGAGACAGTTTCGATACCATTCTTCACGGATACATGGAGACCTGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGGGCTTGGACTACATATTCTCTGCTTGTTAGATATACGCGTGAAAGAACCTACCTTGGAATCTTTATGCAGAGGAAAGAAGCAGTATGAACCACCTAGATATATGTCAGTAAACACTGCAATTGAACAGCTTTTGGAGGTTGAGCAAAACCGAGGAGAATCAGCATACAGCGAAGACACCATGTGTGTTGGGTTTGCTCGGCTTGGAAGTGAGGATCAGAAGATAGTTGCTGGTACAATGAGGCAACTGGAGTCGGTTGATTTTGGAGCACCTCTTCATTGCCTTGTAATAGTAGGCAAGACCCACCCAGTGGAAGAAGAAATGCTGGACTTCTACAGAACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

273

Amino Acids

30.19

Weight (kDa)

5.23

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 1 - 241 1.3e-24 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 784
AccII CGCG 1 cut(s) 513
AciI CCGC 2 cut(s) 231, 362
AclWI GGATC 3 cut(s) 260, 273, 696
AcyI GRCGYC 1 cut(s) 243
AdeI CACNNNGTG 2 cut(s) 657, 784
AfaI GTAC 2 cut(s) 8, 709
AfiI CCNNNNNNNGG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 511
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 4 cut(s) 71, 95, 152, 599
AluBI AGCT 5 cut(s) 278, 308, 385, 447, 604
AluI AGCT 5 cut(s) 278, 308, 385, 447, 604
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 3 cut(s) 128, 395, 430
AlwI GGATC 3 cut(s) 260, 273, 696
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 227, 382
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AseI ATTAAT 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 136
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 2 cut(s) 239, 394
BccI CCATC 1 cut(s) 206
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 128, 395, 430
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 1 cut(s) 808
BfuI GTATCC 1 cut(s) 421
BglII AGATCT 1 cut(s) 84
BisI GCNGC 3 cut(s) 228, 231, 383
BlsI GCNGC 3 cut(s) 229, 232, 384
BmiI GGNNCC 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 128, 430
BsaJI CCNNGG 4 cut(s) 133, 195, 528, 625
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 726, 782
Bse3DI GCAATG 1 cut(s) 751
BseDI CCNNGG 4 cut(s) 133, 195, 528, 625
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMI GCAATG 1 cut(s) 751
BseNI ACTGG 2 cut(s) 726, 782
BseRI GAGGAG 2 cut(s) 101, 642
BseXI GCAGC 2 cut(s) 239, 394
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 3 cut(s) 128, 395, 430
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 2 cut(s) 128, 430
Bsp1286I GDGCHC 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 4 cut(s) 84, 265, 292, 688
BspACI CCGC 2 cut(s) 231, 362
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 260, 273, 696
BspTNI GGTCTC 2 cut(s) 128, 430
BsrDI GCAATG 1 cut(s) 751
BsrFI RCCGGY 1 cut(s) 169
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 2 cut(s) 726, 782
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 4 cut(s) 133, 195, 528, 625
BssMI GATC 4 cut(s) 84, 265, 292, 688
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 4 cut(s) 137, 196, 406, 817
Bst6I CTCTTC 2 cut(s) 133, 753
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 2 cut(s) 133, 195
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 4 cut(s) 87, 268, 295, 691
BstMAI GTCTC 3 cut(s) 128, 395, 430
BstMBI GATC 4 cut(s) 84, 265, 292, 688
BstSFI CTRYAG 1 cut(s) 808
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 239, 394
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 84, 265
BstYI RGATCY 2 cut(s) 84, 265
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 133, 195
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 288, 588, 789
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 2 cut(s) 7, 708
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 2 cut(s) 432, 655
CviQI GTAC 2 cut(s) 7, 708
DdeI CTNAG 1 cut(s) 309
DpnI GATC 4 cut(s) 86, 267, 294, 690
DpnII GATC 4 cut(s) 84, 265, 292, 688
DraIII CACNNNGTG 2 cut(s) 657, 784
Eam1104I CTCTTC 2 cut(s) 133, 753
EarI CTCTTC 2 cut(s) 133, 753
Eco130I CCWWGG 1 cut(s) 528
Eco31I GGTCTC 2 cut(s) 128, 430
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 435, 658
FatI CATG 2 cut(s) 431, 654
Fnu4HI GCNGC 3 cut(s) 228, 231, 383
Fsp4HI GCNGC 3 cut(s) 228, 231, 383
FspBI CTAG 1 cut(s) 570
GluI GCNGC 3 cut(s) 228, 231, 383
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 435, 658
HinfI GANTC 6 cut(s) 236, 369, 460, 533, 632, 725
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 3 cut(s) 241, 465, 693
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 4 cut(s) 137, 196, 406, 817
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 7 cut(s) 182, 227, 340, 347, 382, 543, 593
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 435, 658
Kzo9I GATC 4 cut(s) 84, 265, 292, 688
LmnI GCTCC 2 cut(s) 275, 740
LpnPI CCDG 6 cut(s) 183, 453, 690, 707, 785, 795
Lsp1109I GCAGC 2 cut(s) 239, 394
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 570
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 77
MalI GATC 4 cut(s) 86, 267, 294, 690
MboI GATC 4 cut(s) 84, 265, 292, 688
MboII GAAGA 9 cut(s) 79, 120, 412, 469, 659, 706, 740, 800, 803
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 84, 265
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 1 cut(s) 594
MluI ACGCGT 1 cut(s) 511
MlyI GAGTC 2 cut(s) 378, 734
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 9 cut(s) 47, 122, 193, 539, 604, 620, 679, 708, 756
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 2 cut(s) 221, 324
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 364
MvnI CGCG 1 cut(s) 513
NdeII GATC 4 cut(s) 84, 265, 292, 688
NlaIII CATG 2 cut(s) 435, 658
NlaIV GGNNCC 1 cut(s) 267
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 349
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 4 cut(s) 236, 460, 533, 632
PflMI CCANNNNNTGG 1 cut(s) 784
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 229, 232, 384
PleI GAGTC 2 cut(s) 377, 733
PpsI GAGTC 2 cut(s) 377, 733
PshBI ATTAAT 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 84, 265
RsaI GTAC 2 cut(s) 8, 709
RsaNI GTAC 2 cut(s) 7, 708
SaqAI TTAA 2 cut(s) 221, 324
SatI GCNGC 3 cut(s) 228, 231, 383
Sau3AI GATC 4 cut(s) 84, 265, 292, 688
SchI GAGTC 2 cut(s) 378, 734
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 808
Sse9I AATT 1 cut(s) 594
SsiI CCGC 2 cut(s) 231, 362
SspMI CTAG 1 cut(s) 570
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 137, 196, 406, 817
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 304, 410
TasI AATT 1 cut(s) 594
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 236, 460, 533, 632
Tru1I TTAA 2 cut(s) 221, 324
Tru9I TTAA 2 cut(s) 221, 324
TscAI CASTG 3 cut(s) 295, 595, 789
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 227, 382
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 371, 576, 740
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 3 cut(s) 295, 595, 789
Van91I CCANNNNNTGG 1 cut(s) 784
VspI ATTAAT 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 570
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.