Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016354

Physical Location & Seq

Genomic Coordinates Forward (+)

68406466 .. 68408650

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG484900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACAAGAATCGTTTTTCTTTCATTCATTTTGGCCACATGGACTGTTTTGGCAAACTGTACGCGCCCTCATGTTCAACCTTTAATTCCAGAACCAGAAGAAATAAAATCTTCAACTGCACCATCAACCTCAGCGTCAAGCTCAGATTGCTCTAAGGTGATTTATGCGATGTCAGATTGTATCCCTTTTTTGAGTGATGGAATCAAAACCACAACGCCTGAACGTTCATGCTGCTCTGGATTTGAAACTGTGGTCAAAACTGGTCCTGATTGCGGATGTGAATTCTTCAAGAGTACTGCTAACCTGGGTATCCATTTGAATATGACAAAGGCCATGACTCTTTCTTCGGCATGTGGGATCAATAATGCTCCCCCTCTAACTAATTGCGACGTTCCCATGCCTCCTGGTACTGCTTTTCCTGCCAAGTCTCCAAAATCGGGGAGTACTCCACCTCCAAAATCACATCCAAAGATCAATATAGTTCCTGCACCCTCAGTTGTCACAGCTCCAGTACAATCTCCAGTACCATCTCCAAGCTCTGGAGCTTACTCAATATCTGCTAAACTTGCTCTTACTGCTCTTAGTATGCTTGGTGCTGCTTCATTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

203

Amino Acids

21.0

Weight (kDa)

8.38

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	39 - 125	4.5e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	50 - 129	1.6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016354)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37990
malus_domestica	MD15G1363600.v1.1
prunus_persica	Prupe.1G512100_v2.0.a1
pyrus_communis	pycom08g15270
rosa_chinensis	RchiOBHm_Chr7g0239921
rosa_laevigata	RLG00000000718
rosa_multiflora	Rmu_sc0000540.1_g000034
rosa_roxburghii	Rroxscaffold_3G00220670
rosa_rugosa	Rorug07G0331200 Rorug07G0331300
rosa_samantha	Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana	Rw7G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	273
AclI	AACGTT	1 cut(s)	223
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	6 cut(s)	61, 295, 409, 445, 513, 525
AfiI	CCNNNNNNNGG	3 cut(s)	272, 437, 539
AgsI	TTSAA	5 cut(s)	77, 114, 245, 289, 319
AjnI	CCWGG	2 cut(s)	303, 403
AluBI	AGCT	4 cut(s)	141, 506, 537, 545
AluI	AGCT	4 cut(s)	141, 506, 537, 545
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	33, 330
ApeKI	GCWGC	2 cut(s)	231, 596
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BalI	TGGCCA	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	218, 583
BccI	CCATC	3 cut(s)	130, 191, 535
BciT130I	CCWGG	2 cut(s)	305, 405
BciVI	GTATCC	2 cut(s)	191, 320
BcoDI	GTCTC	1 cut(s)	432
BfuI	GTATCC	2 cut(s)	191, 320
BisI	GCNGC	2 cut(s)	232, 597
BlsI	GCNGC	2 cut(s)	233, 598
BmcAI	AGTACT	2 cut(s)	295, 445
Bme1390I	CCNGG	2 cut(s)	305, 405
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	305, 405
BpmI	CTGGAG	3 cut(s)	492, 504, 561
Bpu10I	CCTNAGC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 437, 539
Bse1I	ACTGG	3 cut(s)	265, 509, 521
BseBI	CCWGG	2 cut(s)	305, 405
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	281, 463
BseLI	CCNNNNNNNGG	3 cut(s)	272, 437, 539
BseMII	CTCAG	3 cut(s)	144, 156, 507
BseNI	ACTGG	3 cut(s)	265, 509, 521
BseXI	GCAGC	2 cut(s)	218, 583
BsgI	GTGCAG	2 cut(s)	102, 471
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	35, 332
BslI	CCNNNNNNNGG	3 cut(s)	272, 437, 539
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	35, 332
Bsp143I	GATC	2 cut(s)	357, 471
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	35, 332
BspCNI	CTCAG	3 cut(s)	143, 155, 506
BspFNI	CGCG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	265, 509, 521
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	357, 471
Bst2UI	CCWGG	2 cut(s)	305, 405
Bst4CI	ACNGT	3 cut(s)	46, 59, 250
BstDEI	CTNAG	5 cut(s)	130, 142, 153, 493, 581
BstF5I	GGATG	2 cut(s)	281, 463
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	360, 474
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	357, 471
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 419, 566, 575
BstNI	CCWGG	2 cut(s)	305, 405
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	303, 403
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	218, 583
BsuI	GTATCC	2 cut(s)	191, 320
BsuRI	GGCC	2 cut(s)	35, 332
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	281, 463
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	6 cut(s)	60, 294, 408, 444, 512, 524
CviAII	CATG	6 cut(s)	39, 71, 228, 334, 351, 397
CviJI	RGCY	6 cut(s)	35, 141, 332, 506, 537, 545
CviKI_1	RGCY	6 cut(s)	35, 141, 332, 506, 537, 545
CviQI	GTAC	6 cut(s)	60, 294, 408, 444, 512, 524
DdeI	CTNAG	5 cut(s)	130, 142, 153, 493, 581
DpnI	GATC	2 cut(s)	359, 473
DpnII	GATC	2 cut(s)	357, 471
EaeI	YGGCCR	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	303, 403
FaeI	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
FatI	CATG	6 cut(s)	38, 70, 227, 333, 350, 396
Fnu4HI	GCNGC	2 cut(s)	232, 597
FokI	GGATG	2 cut(s)	288, 450
Fsp4HI	GCNGC	2 cut(s)	232, 597
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	232, 597
GsuI	CTGGAG	3 cut(s)	492, 504, 561
HaeIII	GGCC	2 cut(s)	35, 332
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	9, 201, 337
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	145, 175
Hpy188III	TCNNGA	5 cut(s)	89, 237, 266, 289, 540
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	3 cut(s)	46, 59, 250
HpyCH4IV	ACGT	3 cut(s)	223, 390, 608
HpyCH4V	TGCA	2 cut(s)	119, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 419, 566, 575
HpyF3I	CTNAG	5 cut(s)	130, 142, 153, 493, 581
HpySE526I	ACGT	3 cut(s)	223, 390, 608
Hsp92II	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	357, 471
LmnI	GCTCC	3 cut(s)	373, 511, 542
Lsp1109I	GCAGC	2 cut(s)	218, 583
MaeII	ACGT	3 cut(s)	223, 390, 608
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	359, 473
MboI	GATC	2 cut(s)	357, 471
MboII	GAAGA	4 cut(s)	102, 110, 277, 336
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	84, 281, 382
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	78, 139, 384, 411, 462, 502
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	305, 405
MvaI	CCWGG	2 cut(s)	305, 405
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	147, 419, 566, 575
NdeII	GATC	2 cut(s)	357, 471
NlaIII	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	9, 201
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	233, 598
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	303, 403
PspGI	CCWGG	2 cut(s)	303, 403
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	6 cut(s)	61, 295, 409, 445, 513, 525
RsaNI	GTAC	6 cut(s)	60, 294, 408, 444, 512, 524
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	232, 597
Sau3AI	GATC	2 cut(s)	357, 471
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	2 cut(s)	295, 445
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	305, 405
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	3 cut(s)	84, 281, 382
SsiI	CCGC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	303, 403
TaaI	ACNGT	3 cut(s)	46, 59, 250
TaiI	ACGT	3 cut(s)	226, 393, 611
TasI	AATT	3 cut(s)	84, 281, 382
TatI	WGTACW	3 cut(s)	293, 443, 511
TfiI	GAWTC	2 cut(s)	9, 201
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	2 cut(s)	231, 596
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	4 cut(s)	12, 16, 216, 591
Van91I	CCANNNNNTGG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	354
ZrmI	AGTACT	2 cut(s)	295, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.