Rmu_sc0000540.1_g000034

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000540.1
OG0016354
Physical Location & Seq
Reverse (-)
151468 .. 152841
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000540.1_g000034.1.cds

Sequence Viewer

Length: 582 bp
atgacaagaatcgtttttctttcattcattttggccacatggactgttttggcaaactgcgcgcgacctcatgttcaacctttaattccagaaacagaagaaataaaatcttcaactgcaccatcaacctcagcgtcaagctcagattgctctaaggtgatttatgcgatgtcagattgtatcccttttttgagtgatggaatcaaaaccacaacgcctgaacgttcatgctgctctggatttgaaactgtggtcaaaactggtcctgattgcggatgtgaattcttcgagagtactgctaacctgggtatccatttgaatatgacaaaggctatgactctttcttcggcatgtgggatcaataatgctccccctctaactaattgcgacgccaagtctccaaaatcggggagtactccacctccaaaatcacatccaaagatcaatatagttcctgcaccctcagttgtcacagctccagtacaatctccagtaccatctccaagctctggagcttactcaatatctgctaaacttgcccttactgctcttagtatgctaggtgctgcttcattgacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

193

Amino Acids

19.98

Weight (kDa)

7.52

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AccII CGCG 2 cut(s) 62, 64
AciI CCGC 1 cut(s) 273
AclI AACGTT 1 cut(s) 223
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 4 cut(s) 295, 415, 483, 495
AfiI CCNNNNNNNGG 3 cut(s) 272, 407, 509
AgsI TTSAA 4 cut(s) 77, 114, 245, 319
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 4 cut(s) 141, 476, 507, 515
AluI AGCT 4 cut(s) 141, 476, 507, 515
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 231, 566
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 2 cut(s) 62, 64
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BalI TGGCCA 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 218, 553
BccI CCATC 3 cut(s) 130, 191, 505
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 2 cut(s) 191, 320
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 560
BfuI GTATCC 2 cut(s) 191, 320
BisI GCNGC 2 cut(s) 232, 567
BlsI GCNGC 2 cut(s) 233, 568
BmcAI AGTACT 2 cut(s) 295, 415
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 263
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 305
BpmI CTGGAG 3 cut(s) 462, 474, 531
Bpu10I CCTNAGC 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 407, 509
Bse1I ACTGG 3 cut(s) 265, 479, 491
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 281, 433
BseLI CCNNNNNNNGG 3 cut(s) 272, 407, 509
BseMII CTCAG 3 cut(s) 144, 156, 477
BseNI ACTGG 3 cut(s) 265, 479, 491
BsePI GCGCGC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 218, 553
BsgI GTGCAG 2 cut(s) 102, 441
Bsh1236I CGCG 2 cut(s) 62, 64
BshFI GGCC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 272, 407, 509
BsmAI GTCTC 1 cut(s) 402
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 357, 441
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 143, 155, 476
BspFNI CGCG 2 cut(s) 62, 64
BspPI GGATC 1 cut(s) 365
BsrI ACTGG 3 cut(s) 265, 479, 491
BssECI CCNNGG 1 cut(s) 304
BssHII GCGCGC 1 cut(s) 60
BssMI GATC 2 cut(s) 357, 441
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 46, 250
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 5 cut(s) 130, 142, 153, 463, 551
BstF5I GGATG 2 cut(s) 281, 433
BstFNI CGCG 2 cut(s) 62, 64
BstHHI GCGC 2 cut(s) 62, 64
BstKTI GATC 2 cut(s) 360, 444
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 357, 441
BstMWI GCNNNNNNNGC 4 cut(s) 59, 147, 536, 545
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 303
BstUI CGCG 2 cut(s) 62, 64
BstV1I GCAGC 2 cut(s) 218, 553
BsuI GTATCC 2 cut(s) 191, 320
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 281, 433
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 62, 64
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 2 cut(s) 123, 398
Csp6I GTAC 4 cut(s) 294, 414, 482, 494
CviAII CATG 4 cut(s) 39, 71, 228, 351
CviJI RGCY 6 cut(s) 35, 141, 332, 476, 507, 515
CviKI_1 RGCY 6 cut(s) 35, 141, 332, 476, 507, 515
CviQI GTAC 4 cut(s) 294, 414, 482, 494
DdeI CTNAG 5 cut(s) 130, 142, 153, 463, 551
DpnI GATC 2 cut(s) 359, 443
DpnII GATC 2 cut(s) 357, 441
DriI GACNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 303
FaeI CATG 4 cut(s) 42, 74, 231, 354
FaiI YATR 9 cut(s) 40, 72, 165, 229, 323, 335, 352, 449, 557
FatI CATG 4 cut(s) 38, 70, 227, 350
Fnu4HI GCNGC 2 cut(s) 232, 567
FokI GGATG 2 cut(s) 288, 420
Fsp4HI GCNGC 2 cut(s) 232, 567
FspBI CTAG 1 cut(s) 560
GlaI GCGC 2 cut(s) 61, 63
GluI GCNGC 2 cut(s) 232, 567
GsuI CTGGAG 3 cut(s) 462, 474, 531
HaeIII GGCC 1 cut(s) 35
HgaI GACGC 2 cut(s) 123, 398
HhaI GCGC 2 cut(s) 62, 64
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 4 cut(s) 42, 74, 231, 354
Hin6I GCGC 2 cut(s) 60, 62
HinP1I GCGC 2 cut(s) 60, 62
HinfI GANTC 3 cut(s) 9, 201, 337
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 145, 175
Hpy188III TCNNGA 5 cut(s) 89, 237, 266, 289, 510
Hpy99I CGWCG 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 46, 250
HpyCH4IV ACGT 2 cut(s) 223, 578
HpyCH4V TGCA 2 cut(s) 119, 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 147, 536, 545
HpyF3I CTNAG 5 cut(s) 130, 142, 153, 463, 551
HpySE526I ACGT 2 cut(s) 223, 578
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 4 cut(s) 42, 74, 231, 354
HspAI GCGC 2 cut(s) 60, 62
Kzo9I GATC 2 cut(s) 357, 441
LmnI GCTCC 3 cut(s) 373, 481, 512
Lsp1109I GCAGC 2 cut(s) 218, 553
MaeI CTAG 1 cut(s) 560
MaeII ACGT 2 cut(s) 223, 578
MaeIII GTNAC 1 cut(s) 469
MalI GATC 2 cut(s) 359, 443
MboI GATC 2 cut(s) 357, 441
MboII GAAGA 4 cut(s) 102, 110, 277, 336
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 84, 281, 382
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 5 cut(s) 78, 139, 384, 432, 472
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 2 cut(s) 62, 64
MwoI GCNNNNNNNGC 4 cut(s) 59, 147, 536, 545
NdeII GATC 2 cut(s) 357, 441
NlaIII CATG 4 cut(s) 42, 74, 231, 354
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 1 cut(s) 354
PauI GCGCGC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 9, 201
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 2 cut(s) 233, 568
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 263
PteI GCGCGC 1 cut(s) 60
RsaI GTAC 4 cut(s) 295, 415, 483, 495
RsaNI GTAC 4 cut(s) 294, 414, 482, 494
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 232, 567
Sau3AI GATC 2 cut(s) 357, 441
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 2 cut(s) 295, 415
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 305
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 84, 281, 382
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 46, 250
TaiI ACGT 2 cut(s) 226, 581
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 84, 281, 382
TatI WGTACW 3 cut(s) 293, 413, 481
TfiI GAWTC 2 cut(s) 9, 201
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 2 cut(s) 231, 566
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 12, 16, 216, 561
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 354
XspI CTAG 1 cut(s) 560
ZrmI AGTACT 2 cut(s) 295, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.