Prupe.1G512100_v2.0.a1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016354
Physical Location & Seq
Reverse (-)
42159958 .. 42161581
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G512100.1

Sequence Viewer

Length: 630 bp
ATGGAGAGGCTCGTCTTTGTTTCATGCATTCTAACCACATGTCTTGCGTTGGCAAGCTGTGCACGAGTCGTAGATCCAGCTGCCCATGCACCAGCAATGTCCATGGCAATGTCACCAAGAACATCCTCTTCTTCATCATCAGGCACGCCTCCAGGCACGGATGAGTGTTCGGACATCATATTCGGCATGGCGGATTGCGTGCCGTTTATGACCGACGGGTCGAAAGACATGAGGCCAGACGGCTCGTGCTGCCCGGGGTTGGAGATGGTGCTGAAAGCTAGCGATGACTGCATATGTGAAGCCATAGAGAGCTGCACTGATTTAGGCATCCCTTTGAATATGACTAAGGCTATGACTTTGCCTGCTGCTTGTGGCATCTCTGCTCCTAATTCTTTTAGTCAATGTGGCATTCCCTTGCCTCCTGGTGTTTCTGTGAAACCAACTCCAAATTCATCACCAAAGAGTCCATCTCCAAAGAGGGCAATGGCAAGTTCCGACGATGTAGTTCCAGCACCCTCCTCCTTCACAGCTCCAACGCGGTCTCCAAACTCCGGAACTTATTCTACATCTACCTCACTTGTGCTTATACTTAGCATGCTTTATGCTTCATTCTACTGTGTTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

210

Amino Acids

21.55

Weight (kDa)

4.7

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccII CGCG 1 cut(s) 538
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 2 cut(s) 191, 538
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 259, 551
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 2 cut(s) 151, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 5 cut(s) 57, 80, 278, 312, 530
AluI AGCT 5 cut(s) 57, 80, 278, 312, 530
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 546
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 253
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 1 cut(s) 233
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 80, 249, 312, 365
ApoI RAATTY 1 cut(s) 448
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 559
AsuC2I CCSGG 2 cut(s) 254, 255
AsuHPI GGTGA 2 cut(s) 105, 447
AsuNHI GCTAGC 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 64
BauI CACGAG 2 cut(s) 63, 244
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 4 cut(s) 67, 236, 299, 352
BccI CCATC 2 cut(s) 259, 475
BceAI ACGGC 2 cut(s) 187, 256
BciT130I CCWGG 2 cut(s) 153, 423
BcnI CCSGG 2 cut(s) 254, 255
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 279
BisI GCNGC 4 cut(s) 81, 250, 313, 366
BlsI GCNGC 4 cut(s) 82, 251, 314, 367
Bme1390I CCNGG 4 cut(s) 153, 254, 255, 423
BmeT110I CYCGRG 1 cut(s) 253
BmrFI CCNGG 4 cut(s) 153, 254, 255, 423
BmsI GCATC 2 cut(s) 336, 384
BmtI GCTAGC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 135
BpuMI CCSGG 2 cut(s) 254, 255
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 3 cut(s) 102, 253, 254
BsaWI WCCGGW 1 cut(s) 551
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 551
Bse3DI GCAATG 3 cut(s) 102, 114, 489
BseAI TCCGGA 1 cut(s) 551
BseBI CCWGG 2 cut(s) 153, 423
BseDI CCNNGG 3 cut(s) 102, 253, 254
BseGI GGATG 3 cut(s) 122, 166, 327
BseLI CCNNNNNNNGG 2 cut(s) 259, 551
BseMI GCAATG 3 cut(s) 102, 114, 489
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 4 cut(s) 67, 236, 299, 352
BsgI GTGCAG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 254, 552
BslI CCNNNNNNNGG 2 cut(s) 259, 551
BsmAI GTCTC 1 cut(s) 546
BsmI GAATGC 2 cut(s) 27, 408
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 546
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 551
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 2 cut(s) 191, 538
BspANI GGCC 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 551
BspFNI CGCG 1 cut(s) 538
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 546
BsrDI GCAATG 3 cut(s) 102, 114, 489
BssECI CCNNGG 3 cut(s) 102, 253, 254
BssMI GATC 1 cut(s) 73
BssSI CACGAG 2 cut(s) 63, 244
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 2 cut(s) 63, 244
Bst2UI CCWGG 2 cut(s) 153, 423
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 6 cut(s) 55, 146, 200, 280, 363, 596
BstDEI CTNAG 2 cut(s) 345, 590
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 122, 166, 327
BstFNI CGCG 1 cut(s) 538
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 59, 86, 249, 288
BstNI CCWGG 2 cut(s) 153, 423
BstNSI RCATGY 2 cut(s) 42, 598
BstSCI CCNGG 4 cut(s) 151, 252, 253, 421
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 4 cut(s) 67, 236, 299, 352
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 122, 166, 327
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 6 cut(s) 55, 146, 200, 280, 363, 596
Cfr9I CCCGGG 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 7 cut(s) 24, 39, 86, 103, 187, 229, 595
DdeI CTNAG 2 cut(s) 345, 590
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 151, 421
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 7 cut(s) 27, 42, 89, 106, 190, 232, 598
FatI CATG 7 cut(s) 23, 38, 85, 102, 186, 228, 594
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 81, 250, 313, 366
FokI GGATG 3 cut(s) 109, 173, 314
Fsp4HI GCNGC 4 cut(s) 81, 250, 313, 366
FspBI CTAG 1 cut(s) 279
GluI GCNGC 4 cut(s) 81, 250, 313, 366
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 254, 552
Hin1II CATG 7 cut(s) 27, 42, 89, 106, 190, 232, 598
HinfI GANTC 2 cut(s) 66, 463
HpaII CCGG 2 cut(s) 254, 552
HphI GGTGA 2 cut(s) 105, 447
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 172, 496
Hpy188III TCNNGA 1 cut(s) 552
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 2 cut(s) 218, 500
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4V TGCA 5 cut(s) 27, 62, 89, 291, 315
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 86, 249, 288
HpyF3I CTNAG 2 cut(s) 345, 590
Hsp92II CATG 7 cut(s) 27, 42, 89, 106, 190, 232, 598
Kpn2I TCCGGA 1 cut(s) 551
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 388, 535
Lsp1109I GCAGC 4 cut(s) 67, 236, 299, 352
LweI GCATC 2 cut(s) 336, 384
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 120, 123
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 388, 448
MlyI GAGTC 2 cut(s) 75, 472
MmeI TCCRAC 3 cut(s) 240, 519, 557
MnlI CCTC 8 cut(s) 136, 159, 225, 429, 471, 526, 529, 583
Mph1103I ATGCAT 1 cut(s) 29
MroI TCCGGA 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 559
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 254, 552
MspR9I CCNGG 4 cut(s) 153, 254, 255, 423
Mva1269I GAATGC 2 cut(s) 27, 408
MvaI CCWGG 2 cut(s) 153, 423
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 4 cut(s) 59, 86, 249, 288
NciI CCSGG 2 cut(s) 254, 255
NcoI CCATGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 293
NdeII GATC 1 cut(s) 73
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 7 cut(s) 27, 42, 89, 106, 190, 232, 598
NmuCI GTSAC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 2 cut(s) 42, 598
PaeI GCATGC 1 cut(s) 598
PciI ACATGT 1 cut(s) 38
PctI GAATGC 2 cut(s) 27, 408
PdmI GAANNNNTTC 1 cut(s) 559
PkrI GCNGC 4 cut(s) 82, 251, 314, 367
PleI GAGTC 2 cut(s) 74, 471
PpsI GAGTC 2 cut(s) 74, 471
PscI ACATGT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 151, 421
PspGI CCWGG 2 cut(s) 151, 421
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 107
SatI GCNGC 4 cut(s) 81, 250, 313, 366
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 2 cut(s) 75, 472
ScrFI CCNGG 4 cut(s) 153, 254, 255, 423
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 59, 82, 280, 314, 532, 575
SfaNI GCATC 2 cut(s) 336, 384
SmaI CCCGGG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 107
SphI GCATGC 1 cut(s) 598
Sse9I AATT 2 cut(s) 388, 448
SsiI CCGC 2 cut(s) 191, 538
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 151, 252, 253, 421
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 617
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 227
TasI AATT 2 cut(s) 388, 448
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 4 cut(s) 80, 249, 312, 365
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 5 cut(s) 12, 123, 441, 597, 612
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 253
TspRI CASTG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 60
XapI RAATTY 1 cut(s) 448
XceI RCATGY 2 cut(s) 42, 598
XmaI CCCGGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 559
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.