RchiOBHm_Chr7g0239921

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016354
Physical Location & Seq
Forward (+)
65710303 .. 65711748
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21505

Sequence Viewer

Length: 612 bp
ATGACAAGAATCGTTTTTCTTTCATTCATTTTGGCCACCTGGACTGTTTTGGCAAACTGTGCGCGCCCCCATGTTCAACCCTTAATTCCAGAACCAGAAGAAATAAAATCTTCAACTGCACCATCAACCTCAGCGTCAAGCTCAGATTGCTCTAAGGTGATTTATGCGATGTCAGATTGTATCCCTTTTTTGAGTGATGGAATCAAAACCACAACGCCTGAACGTTCATGCTGCTCTGGATTTGAAACTGTGGTCAAAACTGGTCCTGATTGCGGATGTGAATTCTTCGAGAGTACTGCTAACCTGGGTATCCATTTGAATATGACAAAGGCCATGACTCTTTCTTCGGCATGTGGGATCAATAATGCTCCCCCTCTAACTAATTGCGACGTTCCCATGCCTCCTGGTACTGCTTTTCCTGCCAAGTCTCCAAAATCGGGGAGTACTCCACCTCCAAAATCACATCCAAAGATCAATATAGTTCCTGCACCCTCAGTTGTCACAGCTCCAGTACAATCTCCAGTACCATCTCCAAGCTCTGGAGCTTACTCAATATCTGCTAAACTTGCCCTTACTGCTCTTAGTATGCTTGGTGCTGCTTCATTGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

203

Amino Acids

20.97

Weight (kDa)

7.52

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 39 - 125 4.9e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 50 - 129 4e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 539
AccII CGCG 1 cut(s) 64
AciI CCGC 1 cut(s) 273
AclI AACGTT 1 cut(s) 223
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 5 cut(s) 295, 409, 445, 513, 525
AfiI CCNNNNNNNGG 3 cut(s) 272, 437, 539
AgsI TTSAA 4 cut(s) 77, 114, 245, 319
AjnI CCWGG 3 cut(s) 38, 303, 403
AluBI AGCT 4 cut(s) 141, 506, 537, 545
AluI AGCT 4 cut(s) 141, 506, 537, 545
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 1 cut(s) 365
AoxI GGCC 2 cut(s) 33, 330
ApeKI GCWGC 2 cut(s) 231, 596
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 2 cut(s) 64, 66
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BalI TGGCCA 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 218, 583
BccI CCATC 3 cut(s) 130, 191, 535
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 3 cut(s) 40, 305, 405
BciVI GTATCC 2 cut(s) 191, 320
BcoDI GTCTC 1 cut(s) 432
BfuI GTATCC 2 cut(s) 191, 320
BisI GCNGC 2 cut(s) 232, 597
BlsI GCNGC 2 cut(s) 233, 598
BmcAI AGTACT 2 cut(s) 295, 445
Bme1390I CCNGG 3 cut(s) 40, 305, 405
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 3 cut(s) 40, 305, 405
BpmI CTGGAG 3 cut(s) 492, 504, 561
Bpu10I CCTNAGC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 437, 539
Bse1I ACTGG 3 cut(s) 265, 509, 521
BseBI CCWGG 3 cut(s) 40, 305, 405
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 281, 463
BseLI CCNNNNNNNGG 3 cut(s) 272, 437, 539
BseMII CTCAG 3 cut(s) 144, 156, 507
BseNI ACTGG 3 cut(s) 265, 509, 521
BsePI GCGCGC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 218, 583
BsgI GTGCAG 2 cut(s) 102, 471
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 35, 332
BslI CCNNNNNNNGG 3 cut(s) 272, 437, 539
BsmAI GTCTC 1 cut(s) 432
BsnI GGCC 2 cut(s) 35, 332
Bsp143I GATC 2 cut(s) 357, 471
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 35, 332
BspCNI CTCAG 3 cut(s) 143, 155, 506
BspFNI CGCG 1 cut(s) 64
BspPI GGATC 1 cut(s) 365
BsrI ACTGG 3 cut(s) 265, 509, 521
BssECI CCNNGG 1 cut(s) 304
BssHII GCGCGC 1 cut(s) 62
BssMI GATC 2 cut(s) 357, 471
Bst2UI CCWGG 3 cut(s) 40, 305, 405
Bst4CI ACNGT 3 cut(s) 46, 59, 250
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 5 cut(s) 130, 142, 153, 493, 581
BstF5I GGATG 2 cut(s) 281, 463
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 2 cut(s) 64, 66
BstKTI GATC 2 cut(s) 360, 474
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 2 cut(s) 357, 471
BstMWI GCNNNNNNNGC 5 cut(s) 59, 147, 419, 566, 575
BstNI CCWGG 3 cut(s) 40, 305, 405
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 38, 303, 403
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 218, 583
BsuI GTATCC 2 cut(s) 191, 320
BsuRI GGCC 2 cut(s) 35, 332
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 281, 463
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 2 cut(s) 64, 66
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 123
Csp6I GTAC 5 cut(s) 294, 408, 444, 512, 524
CviAII CATG 5 cut(s) 71, 228, 334, 351, 397
CviJI RGCY 6 cut(s) 35, 141, 332, 506, 537, 545
CviKI_1 RGCY 6 cut(s) 35, 141, 332, 506, 537, 545
CviQI GTAC 5 cut(s) 294, 408, 444, 512, 524
DdeI CTNAG 5 cut(s) 130, 142, 153, 493, 581
DpnI GATC 2 cut(s) 359, 473
DpnII GATC 2 cut(s) 357, 471
EaeI YGGCCR 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 38, 303, 403
FaeI CATG 5 cut(s) 74, 231, 337, 354, 400
FaiI YATR 9 cut(s) 72, 165, 229, 323, 335, 352, 398, 479, 587
FatI CATG 5 cut(s) 70, 227, 333, 350, 396
Fnu4HI GCNGC 2 cut(s) 232, 597
FokI GGATG 2 cut(s) 288, 450
Fsp4HI GCNGC 2 cut(s) 232, 597
GlaI GCGC 2 cut(s) 63, 65
GluI GCNGC 2 cut(s) 232, 597
GsuI CTGGAG 3 cut(s) 492, 504, 561
HaeIII GGCC 2 cut(s) 35, 332
HgaI GACGC 1 cut(s) 123
HhaI GCGC 2 cut(s) 64, 66
Hin1II CATG 5 cut(s) 74, 231, 337, 354, 400
Hin6I GCGC 2 cut(s) 62, 64
HinP1I GCGC 2 cut(s) 62, 64
HinfI GANTC 3 cut(s) 9, 201, 337
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 145, 175
Hpy188III TCNNGA 5 cut(s) 89, 237, 266, 289, 540
Hpy99I CGWCG 1 cut(s) 392
HpyCH4III ACNGT 3 cut(s) 46, 59, 250
HpyCH4IV ACGT 3 cut(s) 223, 390, 608
HpyCH4V TGCA 2 cut(s) 119, 488
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 147, 419, 566, 575
HpyF3I CTNAG 5 cut(s) 130, 142, 153, 493, 581
HpySE526I ACGT 3 cut(s) 223, 390, 608
Hsp92II CATG 5 cut(s) 74, 231, 337, 354, 400
HspAI GCGC 2 cut(s) 62, 64
Kzo9I GATC 2 cut(s) 357, 471
LmnI GCTCC 3 cut(s) 373, 511, 542
Lsp1109I GCAGC 2 cut(s) 218, 583
MaeII ACGT 3 cut(s) 223, 390, 608
MaeIII GTNAC 1 cut(s) 499
MalI GATC 2 cut(s) 359, 473
MboI GATC 2 cut(s) 357, 471
MboII GAAGA 4 cut(s) 102, 110, 277, 336
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 84, 281, 382
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 5 cut(s) 139, 384, 411, 462, 502
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 40, 305, 405
MvaI CCWGG 3 cut(s) 40, 305, 405
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 5 cut(s) 59, 147, 419, 566, 575
NdeII GATC 2 cut(s) 357, 471
NlaIII CATG 5 cut(s) 74, 231, 337, 354, 400
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 354
PauI GCGCGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 9, 201
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 2 cut(s) 233, 598
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 223
Psp6I CCWGG 3 cut(s) 38, 303, 403
PspGI CCWGG 3 cut(s) 38, 303, 403
PspPI GGNCC 1 cut(s) 263
PteI GCGCGC 1 cut(s) 62
RsaI GTAC 5 cut(s) 295, 409, 445, 513, 525
RsaNI GTAC 5 cut(s) 294, 408, 444, 512, 524
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 232, 597
Sau3AI GATC 2 cut(s) 357, 471
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 2 cut(s) 295, 445
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 3 cut(s) 40, 305, 405
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 84, 281, 382
SsiI CCGC 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 38, 303, 403
TaaI ACNGT 3 cut(s) 46, 59, 250
TaiI ACGT 3 cut(s) 226, 393, 611
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 84, 281, 382
TatI WGTACW 3 cut(s) 293, 443, 511
TfiI GAWTC 2 cut(s) 9, 201
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 2 cut(s) 231, 596
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 4 cut(s) 12, 16, 216, 591
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 354
ZrmI AGTACT 2 cut(s) 295, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.