Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016354

Physical Location & Seq

Genomic Coordinates Forward (+)

54248589 .. 54252059

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG457900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACAAGAATCGTTTTTCTTTCATTCATTTTGGCCACATGGACTGTTTTGGCAAACTGTGCGCGCCCTCATGTTCAACCTTTAACTCCAGAACCAGAAGAAATAAAATCTTCAACTGCACCATCAACCTCACCGTCAAGGTCAGATTGCTCTAAGGTGATTTATGCGATGTCAGATTGTATCCCTTTTTTGAGTGATGGAATCAAAACCACAATGCCTGAACGTTCATGCTGCTCTGGATTTGAAACTGTGGTCAAAACTGGTCCTGACTGCGGATGTGAATTCTTTGAGAGTACTGCTAACCTGGGTATCCATTTGAATATGACAAAGGCCATGACTCTTTCTTCGGCATGTGGGATCAATAATGCTCCTCCTCTAACTAATTGTGACGTTCCCATGCCTCCTGGTACTGCTTTTCCTGGTAATATATGCTCTAACTATTTCTACAAATTTTACTTTGAATTATTACCATTTTTTGTTCTTATACCCTTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

166

Amino Acids

18.11

Weight (kDa)

5.27

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	38 - 125	3.7e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	50 - 129	7.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016354)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37990
malus_domestica	MD15G1363600.v1.1
prunus_persica	Prupe.1G512100_v2.0.a1
pyrus_communis	pycom08g15270
rosa_chinensis	RchiOBHm_Chr7g0239921
rosa_laevigata	RLG00000000718
rosa_multiflora	Rmu_sc0000540.1_g000034
rosa_roxburghii	Rroxscaffold_3G00220670
rosa_rugosa	Rorug07G0331200 Rorug07G0331300
rosa_samantha	Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana	Rw7G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	273
AclI	AACGTT	1 cut(s)	223
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	281, 449
AfaI	GTAC	2 cut(s)	295, 409
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	77, 114, 245, 319, 461, 493
AjnI	CCWGG	3 cut(s)	303, 403, 418
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	33, 330
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	281, 449
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	2 cut(s)	64, 66
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	123, 169
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BalI	TGGCCA	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	130, 191
BciT130I	CCWGG	3 cut(s)	305, 405, 420
BciVI	GTATCC	2 cut(s)	191, 320
BfuI	GTATCC	2 cut(s)	191, 320
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	305, 405, 420
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	3 cut(s)	305, 405, 420
BpmI	CTGGAG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	305, 405, 420
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	265
BsePI	GCGCGC	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	360, 363
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	35, 332
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	2 cut(s)	35, 332
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	35, 332
BspFNI	CGCG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	304
BssHII	GCGCGC	1 cut(s)	62
BssMI	GATC	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	305, 405, 420
Bst4CI	ACNGT	4 cut(s)	46, 59, 135, 250
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	64, 66
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	305, 405, 420
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	3 cut(s)	303, 403, 418
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	218
BsuI	GTATCC	2 cut(s)	191, 320
BsuRI	GGCC	2 cut(s)	35, 332
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	2 cut(s)	64, 66
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	294, 408
CviAII	CATG	6 cut(s)	39, 71, 228, 334, 351, 397
CviJI	RGCY	2 cut(s)	35, 332
CviKI_1	RGCY	2 cut(s)	35, 332
CviQI	GTAC	2 cut(s)	294, 408
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	303, 403, 418
FaeI	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
FatI	CATG	6 cut(s)	38, 70, 227, 333, 350, 396
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	232
GlaI	GCGC	2 cut(s)	63, 65
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	35, 332
HhaI	GCGC	2 cut(s)	64, 66
Hin1II	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
Hin6I	GCGC	2 cut(s)	62, 64
HinP1I	GCGC	2 cut(s)	62, 64
HinfI	GANTC	3 cut(s)	9, 201, 337
HphI	GGTGA	2 cut(s)	123, 169
Hpy188I	TCNGA	2 cut(s)	145, 175
Hpy188III	TCNNGA	3 cut(s)	89, 237, 266
HpyCH4III	ACNGT	4 cut(s)	46, 59, 135, 250
HpyCH4IV	ACGT	2 cut(s)	223, 390
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	2 cut(s)	223, 390
Hsp92II	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
HspAI	GCGC	2 cut(s)	62, 64
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	218
MaeII	ACGT	2 cut(s)	223, 390
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	3 cut(s)	102, 110, 336
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	4 cut(s)	281, 382, 449, 461
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	78, 139, 381, 384, 411
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	305, 405, 420
MvaI	CCWGG	3 cut(s)	305, 405, 420
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	6 cut(s)	42, 74, 231, 337, 354, 400
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	354
PauI	GCGCGC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	9, 201
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	303, 403, 418
PspGI	CCWGG	3 cut(s)	303, 403, 418
PspPI	GGNCC	1 cut(s)	263
PteI	GCGCGC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	295, 409
RsaNI	GTAC	2 cut(s)	294, 408
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	3 cut(s)	305, 405, 420
SetI	ASST	7 cut(s)	82, 131, 143, 159, 226, 306, 393
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	281, 382, 449, 461
SsiI	CCGC	1 cut(s)	273
StyD4I	CCNGG	3 cut(s)	303, 403, 418
TaaI	ACNGT	4 cut(s)	46, 59, 135, 250
TaiI	ACGT	2 cut(s)	226, 393
TasI	AATT	4 cut(s)	281, 382, 449, 461
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	9, 201
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	12, 16, 216
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	281, 449
XceI	RCATGY	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.