MD15G1363600.v1.1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016354
Physical Location & Seq
Reverse (-)
44069662 .. 44071069
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1363600.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGAGAGATTGATATTCATTTTGACCACATGTTTTATGTTGGCAAATTGTGCACGAATCCCTGATGTTGATCCACTATCGTATGCAGCATCACCGGAACCAAGCTCACCGGACGTACCAAAAACAGCAGGCTCACCAAGCGCAGATGGTTGTAACGATGTGATATTCGAAATTGCTGATTGCATTCCCTTTTTAAGCGATGGGAACACGAACACAAAGCCGGAAGGTTCGTGTTGTCCCGGATTGGAGATGGTGCTAAAAGCTAGTGATGGCTGCATATGTGAAGCCATAGAAAGTAGTGCTGATTTGGGTGTTCATATAAATATGACAAAGGCTATGACATTGCCTTCTGCTTGTGGAATCTCTGCACCTTCTTTTCTTAGTGAATGTAACATCCCATTGCCTCCTGGTGCAAGTGCTCAGGTACCCCACACACATGCTCCAAAATCATCACCAAAGAGTCAATCTCCAAAACCAAGCCAGGCACCAAGAAGTTCCGTTAATGTAGTTCCATCACCGGTCACTGCTCCACACGCCGGAACTTACTCAGTATCTGCATCTCTAGTGCTTACTCTTAGCATGCTTTCTGCATCATTCTACTGTATTTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

205

Amino Acids

21.08

Weight (kDa)

4.89

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 44 - 126 1.5e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 51 - 125 4.6e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016354)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37990
malus_domestica MD15G1363600.v1.1
prunus_persica Prupe.1G512100_v2.0.a1
pyrus_communis pycom08g15270
rosa_chinensis RchiOBHm_Chr7g0239921
rosa_laevigata RLG00000000718
rosa_multiflora Rmu_sc0000540.1_g000034
rosa_roxburghii Rroxscaffold_3G00220670
rosa_rugosa Rorug07G0331200 Rorug07G0331300
rosa_samantha Rh7AG484900 Rh7BG457900 Rh7CG502100 Rh7DG470300
rosa_wichuraiana Rw7G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 2 cut(s) 424, 484
AclWI GGATC 1 cut(s) 65
AfaI GTAC 2 cut(s) 117, 426
AfiI CCNNNNNNNGG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 517
AjnI CCWGG 2 cut(s) 406, 480
AluBI AGCT 2 cut(s) 105, 263
AluI AGCT 2 cut(s) 105, 263
Alw21I GWGCWC 2 cut(s) 55, 421
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 1 cut(s) 65
AlwNI CAGNNNCTG 1 cut(s) 554
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 86, 273
AsiGI ACCGGT 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 5 cut(s) 84, 99, 126, 444, 507
AsuII TTCGAA 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 424, 484
Bbv12I GWGCWC 2 cut(s) 55, 421
BbvI GCAGC 2 cut(s) 98, 260
BccI CCATC 5 cut(s) 140, 194, 244, 263, 520
BciT130I CCWGG 2 cut(s) 408, 482
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 264, 563
BisI GCNGC 2 cut(s) 87, 274
BlsI GCNGC 2 cut(s) 88, 275
Bme1390I CCNGG 3 cut(s) 240, 408, 482
BmiI GGNNCC 3 cut(s) 99, 426, 486
BmrFI CCNGG 3 cut(s) 240, 408, 482
BmsI GCATC 3 cut(s) 98, 566, 599
BplI GAGNNNNNCTC 2 cut(s) 451, 483
Bpu10I CCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 69
BsaWI WCCGGW 3 cut(s) 94, 109, 517
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse118I RCCGGY 1 cut(s) 517
Bse3DI GCAATG 2 cut(s) 341, 398
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 2 cut(s) 408, 482
BseGI GGATG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 341, 398
BseMII CTCAG 2 cut(s) 434, 561
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 98, 260
BsgI GTGCAG 1 cut(s) 351
BshNI GGYRCC 2 cut(s) 424, 484
BshTI ACCGGT 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 55, 421
BsiSI CCGG 6 cut(s) 95, 110, 221, 240, 518, 537
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 55, 421
Bsp143I GATC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 433, 560
BspLI GGNNCC 3 cut(s) 99, 426, 486
BspPI GGATC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 2 cut(s) 424, 484
BsrDI GCAATG 2 cut(s) 341, 398
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 408, 482
Bst4CI ACNGT 1 cut(s) 602
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 130, 581
BstDEI CTNAG 4 cut(s) 380, 420, 547, 575
BstF5I GGATG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 50, 138, 533
BstNI CCWGG 2 cut(s) 408, 482
BstNSI RCATGY 3 cut(s) 33, 440, 583
BstSCI CCNGG 3 cut(s) 238, 406, 480
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 98, 260
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 130, 581
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 517
Csp6I GTAC 2 cut(s) 116, 425
CspAI ACCGGT 1 cut(s) 517
CviAII CATG 3 cut(s) 30, 437, 580
CviJI RGCY 8 cut(s) 105, 132, 220, 263, 273, 287, 335, 480
CviKI_1 RGCY 8 cut(s) 105, 132, 220, 263, 273, 287, 335, 480
CviQI GTAC 2 cut(s) 116, 425
DdeI CTNAG 4 cut(s) 380, 420, 547, 575
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 406, 480
FaeI CATG 3 cut(s) 33, 440, 583
FaqI GGGAC 1 cut(s) 222
FatI CATG 3 cut(s) 29, 436, 579
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 87, 274
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 87, 274
FspBI CTAG 2 cut(s) 264, 563
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 87, 274
HapII CCGG 6 cut(s) 95, 110, 221, 240, 518, 537
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 33, 440, 583
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 57, 360, 460
HpaII CCGG 6 cut(s) 95, 110, 221, 240, 518, 537
HphI GGTGA 5 cut(s) 84, 99, 126, 444, 507
Hpy166II GTNNAC 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 218, 357, 381
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 8 cut(s) 53, 86, 183, 276, 368, 413, 557, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 138, 533
HpyF3I CTNAG 4 cut(s) 380, 420, 547, 575
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 33, 440, 583
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 428
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 445, 532
Lsp1109I GCAGC 2 cut(s) 98, 260
LweI GCATC 3 cut(s) 98, 566, 599
MaeI CTAG 2 cut(s) 264, 563
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 152, 389, 520
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 55, 421
MluCI AATT 2 cut(s) 46, 171
MlyI GAGTC 1 cut(s) 469
MnlI CCTC 1 cut(s) 414
MseI TTAA 3 cut(s) 194, 501, 613
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 6 cut(s) 95, 110, 221, 240, 518, 537
MspR9I CCNGG 3 cut(s) 240, 408, 482
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 2 cut(s) 408, 482
MwoI GCNNNNNNNGC 3 cut(s) 50, 138, 533
NciI CCSGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 278
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 33, 440, 583
NlaIV GGNNCC 3 cut(s) 99, 426, 486
NmuCI GTSAC 1 cut(s) 520
NspI RCATGY 3 cut(s) 33, 440, 583
NspV TTCGAA 1 cut(s) 168
PaeI GCATGC 1 cut(s) 583
PciI ACATGT 1 cut(s) 29
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 57, 360
PfoI TCCNGGA 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 2 cut(s) 88, 275
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PscI ACATGT 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 406, 480
PspGI CCWGG 2 cut(s) 406, 480
PspN4I GGNNCC 3 cut(s) 99, 426, 486
PstNI CAGNNNCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 117, 426
RsaNI GTAC 2 cut(s) 116, 425
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 3 cut(s) 194, 501, 613
SatI GCNGC 2 cut(s) 87, 274
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 3 cut(s) 240, 408, 482
SduI GDGCHC 2 cut(s) 55, 421
SetI ASST 6 cut(s) 107, 117, 229, 265, 373, 426
SfaNI GCATC 3 cut(s) 98, 566, 599
SfuI TTCGAA 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 435
SphI GCATGC 1 cut(s) 583
Sse9I AATT 2 cut(s) 46, 171
SspMI CTAG 2 cut(s) 264, 563
StyD4I CCNGG 3 cut(s) 238, 406, 480
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 46, 171
TfiI GAWTC 2 cut(s) 57, 360
Tru1I TTAA 3 cut(s) 194, 501, 613
Tru9I TTAA 3 cut(s) 194, 501, 613
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 2 cut(s) 86, 273
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 7, 305, 597
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 1 cut(s) 529
VneI GTGCAC 1 cut(s) 51
XceI RCATGY 3 cut(s) 33, 440, 583
XspI CTAG 2 cut(s) 264, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.