FvH4_6g00240

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015492
Physical Location & Seq
Reverse (-)
172287 .. 175069
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00240.t1

Sequence Viewer

Length: 924 bp
ATGGCGCTCTCTCTCTCCTCCGGCCGCTTGTTTTGGCTCTTGGCAGTCTCCGCCGTTTTGGCTGTTGCAGTAGGTTTTCAGTCCGATGAGCTTTTGGTGGACGACGAGGAGTTCGGTCTGGAAGGAGGGGTGCACACCAAGTCTCCCGATCTCACTTACACACGATCTTCGCCGTCGCCGGCGACGCCGCAACCGACCACAAGGAGGAGGTCTTCCGATCAAGATACCGACTCCAAGATCCAGTTCGAGCTCCATCACGCTTTCGGCGACTCTGATTTCTCTCCCGCCGGTACCTTCAGTGCTCGCTTGAAGACTTGGAATTACGGCGGCCAGACGCTTACGAAGCTTCGATTTTCGAGGAATGCTTTTACTGAAGAGGAGAAGGACAAGTTTTCTACGCTGCTGAAAGGAGATGACTTTTATAGTATAAGGTTGCCATCCAGTGTCGTGAATCCTCCTGGGAGGGATTATGTTGTTTCATCAATAAAAGCGAGATGTCTTCTGCGAGATGGTTTGGATGAACACTTTGTTATACACACGGATGGAGTTAATATTCTGGCAGTTAATTATGGCTCTCCTGGGGCATGCCCATATCCTCGGCAACTGAAACTTCCTTCAAAATGGTCATTCAACTCTCACACTATCTTGAAGAACAGTGAACAGGCACCAAGAGCTCCAGTGTTTTCTGAGGAGATTTTTGGTGGTGGTGAGGGAGTAGAAGGTGAAGTTGTACCACCACAAGAAAGGTCTTTCTGGGCTAAATATTGGATGTACCTGATCCCACTTGGGCTAATTGTTATGAATGCCGTAACCCAAGCAATGAACATGGCCGAGGAACAGGTTGGTGCACCCTCTGCTGCTGGCCAAGCACAACAGCCCGCTGCAATCCAACGTGGATCAAGTTCTTCTGTTAGAAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.72

Weight (kDa)

6.1

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65270 AT1G65270 AT1G65270
fragaria_vesca FvH4_6g00240
malus_domestica MD04G1246900.v1.1 MD12G1263300.v1.1
prunus_persica Prupe.6G363100_v2.0.a1
pyrus_communis pycom04g21760 pycom12g24060
rosa_chinensis RchiOBHm_Chr3g0447611
rosa_laevigata RLG00000025984
rosa_multiflora Rmu_sc0003550.1_g000004
rosa_roxburghii Rroxscaffold_6G00425820
rosa_rugosa Rorug02G0603500
rosa_samantha Rh3AG003700
rosa_wichuraiana Rw3G000260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 290, 664
AciI CCGC 6 cut(s) 25, 51, 188, 285, 327, 879
AclWI GGATC 3 cut(s) 232, 772, 904
AcoI YGGCCR 4 cut(s) 22, 328, 828, 862
AcuI CTGAAG 2 cut(s) 280, 393
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 3 cut(s) 292, 732, 773
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 4 cut(s) 310, 618, 631, 649
AjnI CCWGG 2 cut(s) 457, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 4 cut(s) 91, 250, 346, 674
AluI AGCT 4 cut(s) 91, 250, 346, 674
Alw21I GWGCWC 5 cut(s) 135, 252, 304, 676, 850
Alw26I GTCTC 2 cut(s) 52, 147
Alw44I GTGCAC 2 cut(s) 131, 846
AlwI GGATC 3 cut(s) 232, 772, 904
AoxI GGCC 4 cut(s) 22, 328, 828, 862
ApaLI GTGCAC 2 cut(s) 131, 846
ApeKI GCWGC 3 cut(s) 400, 857, 881
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 719, 734
BaeGI GKGCMC 2 cut(s) 135, 850
BalI TGGCCA 1 cut(s) 864
BanI GGYRCC 2 cut(s) 290, 664
BanII GRGCYC 2 cut(s) 252, 676
BbsI GAAGAC 3 cut(s) 204, 317, 491
Bbv12I GWGCWC 5 cut(s) 135, 252, 304, 676, 850
BbvI GCAGC 3 cut(s) 387, 844, 868
BccI CCATC 4 cut(s) 261, 445, 503, 536
BceAI ACGGC 4 cut(s) 38, 157, 340, 791
BciT130I CCWGG 2 cut(s) 459, 579
BcoDI GTCTC 2 cut(s) 52, 147
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 6 cut(s) 25, 188, 328, 401, 858, 882
BlsI GCNGC 6 cut(s) 26, 189, 329, 402, 859, 883
Bme1390I CCNGG 2 cut(s) 459, 579
BmiI GGNNCC 2 cut(s) 292, 666
BmrFI CCNGG 2 cut(s) 459, 579
BpiI GAAGAC 3 cut(s) 204, 317, 491
BpmI CTGGAG 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 458, 578, 596, 831
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 2 cut(s) 178, 287
Bse1I ACTGG 3 cut(s) 241, 441, 677
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 2 cut(s) 459, 579
BseDI CCNNGG 4 cut(s) 458, 578, 596, 831
BseGI GGATG 4 cut(s) 437, 523, 547, 774
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 3 cut(s) 241, 441, 677
BseRI GAGGAG 5 cut(s) 7, 122, 220, 392, 704
BseSI GKGCMC 2 cut(s) 135, 850
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 387, 844, 868
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 4 cut(s) 24, 330, 830, 864
BshNI GGYRCC 2 cut(s) 290, 664
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 5 cut(s) 135, 252, 304, 676, 850
BsiSI CCGG 3 cut(s) 21, 179, 288
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 52, 147
BsmI GAATGC 2 cut(s) 367, 808
BsnI GGCC 4 cut(s) 24, 330, 830, 864
Bsp1286I GDGCHC 5 cut(s) 135, 252, 304, 676, 850
Bsp143I GATC 6 cut(s) 148, 164, 217, 237, 777, 896
BspACI CCGC 6 cut(s) 25, 51, 188, 285, 327, 879
BspANI GGCC 4 cut(s) 24, 330, 830, 864
BspCNI CTCAG 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 292, 666
BspPI GGATC 3 cut(s) 232, 772, 904
BspT107I GGYRCC 2 cut(s) 290, 664
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 2 cut(s) 178, 287
BsrI ACTGG 3 cut(s) 241, 441, 677
BssAI RCCGGY 2 cut(s) 178, 287
BssECI CCNNGG 4 cut(s) 458, 578, 596, 831
BssMI GATC 6 cut(s) 148, 164, 217, 237, 777, 896
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 459, 579
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 854
BstC8I GCNNGC 5 cut(s) 180, 304, 586, 862, 879
BstDEI CTNAG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 437, 523, 547, 774
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 151, 167, 220, 240, 780, 899
BstMAI GTCTC 2 cut(s) 52, 147
BstMBI GATC 6 cut(s) 148, 164, 217, 237, 777, 896
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 7 cut(s) 50, 59, 184, 343, 671, 854, 866
BstNI CCWGG 2 cut(s) 459, 579
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 2 cut(s) 457, 577
BstSLI GKGCMC 2 cut(s) 135, 850
BstV1I GCAGC 3 cut(s) 387, 844, 868
BstV2I GAAGAC 3 cut(s) 204, 317, 491
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 4 cut(s) 24, 330, 830, 864
BtsCI GGATG 4 cut(s) 437, 523, 547, 774
BtsIMutI CAGTG 4 cut(s) 304, 448, 661, 684
Cac8I GCNNGC 5 cut(s) 180, 304, 586, 862, 879
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 178, 287
CseI GACGC 2 cut(s) 193, 343
Csp6I GTAC 3 cut(s) 291, 731, 772
CviAII CATG 2 cut(s) 585, 826
CviQI GTAC 3 cut(s) 291, 731, 772
DdeI CTNAG 1 cut(s) 687
DpnI GATC 6 cut(s) 150, 166, 219, 239, 779, 898
DpnII GATC 6 cut(s) 148, 164, 217, 237, 777, 896
EaeI YGGCCR 4 cut(s) 22, 328, 828, 862
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 2 cut(s) 250, 674
EclXI CGGCCG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 252, 676
Eco52I CGGCCG 1 cut(s) 22
Eco53kI GAGCTC 2 cut(s) 250, 674
Eco57I CTGAAG 2 cut(s) 280, 393
EcoICRI GAGCTC 2 cut(s) 250, 674
EcoRII CCWGG 2 cut(s) 457, 577
EcoT38I GRGCYC 2 cut(s) 252, 676
FaeI CATG 2 cut(s) 588, 829
FaiI YATR 9 cut(s) 423, 428, 471, 533, 570, 586, 592, 800, 827
FatI CATG 2 cut(s) 584, 825
FauI CCCGC 2 cut(s) 292, 886
Fnu4HI GCNGC 6 cut(s) 25, 188, 328, 401, 858, 882
FokI GGATG 4 cut(s) 424, 530, 554, 781
FriOI GRGCYC 2 cut(s) 252, 676
Fsp4HI GCNGC 6 cut(s) 25, 188, 328, 401, 858, 882
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 25, 188, 328, 401, 858, 882
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 24, 330, 830, 864
HapII CCGG 3 cut(s) 21, 179, 288
HgaI GACGC 2 cut(s) 193, 343
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 588, 829
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 3 cut(s) 230, 269, 451
HpaII CCGG 3 cut(s) 21, 179, 288
HphI GGTGA 2 cut(s) 719, 734
Hpy166II GTNNAC 4 cut(s) 100, 133, 659, 848
Hpy188I TCNGA 4 cut(s) 85, 217, 274, 688
Hpy188III TCNNGA 5 cut(s) 119, 146, 221, 448, 646
Hpy8I GTNNAC 4 cut(s) 100, 133, 659, 848
Hpy99I CGWCG 3 cut(s) 107, 178, 187
HpyAV CCTTC 5 cut(s) 116, 304, 376, 624, 713
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 4 cut(s) 68, 133, 848, 884
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 59, 184, 343, 671, 854, 866
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 1 cut(s) 892
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 588, 829
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 6 cut(s) 148, 164, 217, 237, 777, 896
LmnI GCTCC 2 cut(s) 255, 679
Lsp1109I GCAGC 3 cut(s) 387, 844, 868
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 1 cut(s) 808
MalI GATC 6 cut(s) 150, 166, 219, 239, 779, 898
MboI GATC 6 cut(s) 148, 164, 217, 237, 777, 896
MboII GAAGA 7 cut(s) 159, 204, 322, 386, 491, 661, 897
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 5 cut(s) 135, 252, 304, 676, 850
MlsI TGGCCA 1 cut(s) 864
MluCI AATT 3 cut(s) 319, 565, 792
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 2 cut(s) 224, 263
MmeI TCCRAC 1 cut(s) 913
Mox20I TGGCCA 1 cut(s) 864
MreI CGCCGGCG 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 178
MscI TGGCCA 1 cut(s) 864
MseI TTAA 2 cut(s) 549, 564
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 3 cut(s) 21, 179, 288
MspR9I CCNGG 2 cut(s) 459, 579
Mva1269I GAATGC 2 cut(s) 367, 808
MvaI CCWGG 2 cut(s) 459, 579
MwoI GCNNNNNNNGC 7 cut(s) 50, 59, 184, 343, 671, 854, 866
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 6 cut(s) 148, 164, 217, 237, 777, 896
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 2 cut(s) 588, 829
NlaIV GGNNCC 2 cut(s) 292, 666
NmeAIII GCCGAG 2 cut(s) 577, 856
NspI RCATGY 1 cut(s) 588
PaeI GCATGC 1 cut(s) 588
PcsI WCGNNNNNNNCGW 2 cut(s) 191, 264
PctI GAATGC 2 cut(s) 367, 808
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 6 cut(s) 26, 189, 329, 402, 859, 883
PleI GAGTC 2 cut(s) 224, 263
PpsI GAGTC 2 cut(s) 224, 263
Psp124BI GAGCTC 2 cut(s) 252, 676
Psp6I CCWGG 2 cut(s) 457, 577
PspGI CCWGG 2 cut(s) 457, 577
PspN4I GGNNCC 2 cut(s) 292, 666
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 3 cut(s) 292, 732, 773
RsaNI GTAC 3 cut(s) 291, 731, 772
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 2 cut(s) 252, 676
SaqAI TTAA 2 cut(s) 549, 564
SatI GCNGC 6 cut(s) 25, 188, 328, 401, 858, 882
Sau3AI GATC 6 cut(s) 148, 164, 217, 237, 777, 896
SchI GAGTC 2 cut(s) 224, 263
ScrFI CCNGG 2 cut(s) 459, 579
SduI GDGCHC 5 cut(s) 135, 252, 304, 676, 850
SgrAI CRCCGGYG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 540
SphI GCATGC 1 cut(s) 588
Sse9I AATT 3 cut(s) 319, 565, 792
SsiI CCGC 6 cut(s) 25, 51, 188, 285, 327, 879
SspI AATATT 2 cut(s) 553, 764
SstI GAGCTC 2 cut(s) 252, 676
StyD4I CCNGG 2 cut(s) 457, 577
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 1 cut(s) 895
TaqI TCGA 3 cut(s) 246, 349, 356
TaqII GACCGA 1 cut(s) 104
TasI AATT 3 cut(s) 319, 565, 792
TauI GCSGC 3 cut(s) 27, 190, 330
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 549, 564
Tru9I TTAA 2 cut(s) 549, 564
TscAI CASTG 4 cut(s) 304, 448, 661, 684
TseI GCWGC 3 cut(s) 400, 857, 881
TspDTI ATGAA 4 cut(s) 468, 534, 815, 836
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 4 cut(s) 304, 448, 661, 684
VneI GTGCAC 2 cut(s) 131, 846
XceI RCATGY 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.