Rorug02G0603500

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015492
Physical Location & Seq
Reverse (-)
72185395 .. 72187094
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0603500.1

Sequence Viewer

Length: 714 bp
ATGGCCAATCTTTCAACTCTAACTGGGATGTTTCTGGTGCTAGAGCTGGCAATGTCGGTCAGCGCGCGCACTTGGGCTGCCAAGGACGAGAATTCCGGTGGTGGCAGGCCACTAACTGAGGAGGAGATAGGGGCATGGATAAATGTTCTGAGGGGAGCCGAGATTGCTCTTGAAGCTGATAAAATTCAAACAGCTAGTGCCATGGTTGCAGGACTTGCTGCCAGGTTAGATGCTACCGATTTGCCTGACGATGTGAAAGAAGCCAAGCTTCAAGAAATGATGAAAGCAATTGAGCAGGCAGTCGAAGAAGATAATAAATCCAAAGCTGTAGCTCTCATTAACGCAATTGGAGCGGAGTTCGAACACCAACACGGAAATGCGCGAGGAAGAGGAACTCTGCAGAGGCAGTTACACCAAACTGAAAATTTGCACAGCGTACAGCCGGTGCTAGCAGGCCGTTTGAAAGATGCCTTCACAGCTATTGAAAGACAGGAAATAGCCAAAGCTCAACGGATTCTCCACGGTTTTTACCATCTTCTTAAGGATAATAAGGAATTATGTAAGGATAAAAAAACACTAATATTTCTTCATGCCATCCACCAAACTGAGCAGTATATTAAACAAGATATGAGATCAAAAGCTGAACAGACTCTCCAAGGAGCTGCCTTCGCTCTTGGAGTTGGAGTTCAAAATCAGCTACAAGAAGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.07

Weight (kDa)

6.0

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65270 AT1G65270 AT1G65270
fragaria_vesca FvH4_6g00240
malus_domestica MD04G1246900.v1.1 MD12G1263300.v1.1
prunus_persica Prupe.6G363100_v2.0.a1
pyrus_communis pycom04g21760 pycom12g24060
rosa_chinensis RchiOBHm_Chr3g0447611
rosa_laevigata RLG00000025984
rosa_multiflora Rmu_sc0003550.1_g000004
rosa_roxburghii Rroxscaffold_6G00425820
rosa_rugosa Rorug02G0603500
rosa_samantha Rh3AG003700
rosa_wichuraiana Rw3G000260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 3 cut(s) 65, 67, 382
AciI CCGC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 91, 183, 424
AfaI GTAC 1 cut(s) 438
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 7 cut(s) 15, 173, 188, 272, 463, 485, 689
AjnI CCWGG 1 cut(s) 221
AloI GAACNNNNNNTCC 4 cut(s) 636, 668, 669, 701
AoxI GGCC 3 cut(s) 3, 107, 454
ApeKI GCWGC 3 cut(s) 77, 218, 662
ApoI RAATTY 3 cut(s) 91, 183, 424
AspLEI GCGC 4 cut(s) 65, 67, 69, 382
AsuII TTCGAA 1 cut(s) 360
AsuNHI GCTAGC 1 cut(s) 448
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 64, 205, 649
BccI CCATC 2 cut(s) 540, 602
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 3 cut(s) 41, 195, 449
BfmI CTRYAG 2 cut(s) 327, 398
BfrI CTTAAG 1 cut(s) 539
BisI GCNGC 3 cut(s) 78, 219, 663
BlsI GCNGC 3 cut(s) 79, 220, 664
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 2 cut(s) 220, 457
BmtI GCTAGC 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 81, 201, 520, 655
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 6 cut(s) 501, 531, 636, 666, 669, 699
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 4 cut(s) 81, 201, 520, 655
BseGI GGATG 2 cut(s) 33, 594
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 3 cut(s) 108, 140, 597
BseNI ACTGG 1 cut(s) 28
BsePI GCGCGC 2 cut(s) 63, 65
BseRI GAGGAG 2 cut(s) 134, 137
BseXI GCAGC 3 cut(s) 64, 205, 649
Bsh1236I CGCG 3 cut(s) 65, 67, 382
BshFI GGCC 3 cut(s) 5, 109, 456
BsiSI CCGG 2 cut(s) 96, 443
BsnI GGCC 3 cut(s) 5, 109, 456
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 632
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 353
BspANI GGCC 3 cut(s) 5, 109, 456
BspCNI CTCAG 3 cut(s) 109, 141, 598
BspFNI CGCG 3 cut(s) 65, 67, 382
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 81, 201, 520, 655
BssHII GCGCGC 2 cut(s) 63, 65
BssMI GATC 1 cut(s) 632
BssT1I CCWWGG 3 cut(s) 81, 201, 655
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 7 cut(s) 48, 65, 67, 107, 297, 450, 454
BstDEI CTNAG 3 cut(s) 117, 149, 606
BstDSI CCRYGG 2 cut(s) 201, 520
BstF5I GGATG 2 cut(s) 33, 594
BstFNI CGCG 3 cut(s) 65, 67, 382
BstHHI GCGC 4 cut(s) 65, 67, 69, 382
BstKTI GATC 1 cut(s) 635
BstMBI GATC 1 cut(s) 632
BstMWI GCNNNNNNNGC 7 cut(s) 164, 173, 206, 215, 350, 476, 668
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstSFI CTRYAG 2 cut(s) 327, 398
BstUI CGCG 3 cut(s) 65, 67, 382
BstV1I GCAGC 3 cut(s) 64, 205, 649
BsuRI GGCC 3 cut(s) 5, 109, 456
BtgI CCRYGG 2 cut(s) 201, 520
BtsCI GGATG 2 cut(s) 33, 594
Cac8I GCNNGC 7 cut(s) 48, 65, 67, 107, 297, 450, 454
CfoI GCGC 4 cut(s) 65, 67, 69, 382
Cfr10I RCCGGY 1 cut(s) 442
Csp6I GTAC 1 cut(s) 437
CviAII CATG 3 cut(s) 135, 202, 590
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 117, 149, 606
DpnI GATC 1 cut(s) 634
DpnII GATC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 81, 201, 655
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 3 cut(s) 81, 201, 655
ErhI CCWWGG 3 cut(s) 81, 201, 655
FaeI CATG 3 cut(s) 138, 205, 593
FaiI YATR 6 cut(s) 136, 203, 559, 591, 615, 629
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 3 cut(s) 134, 201, 589
Fnu4HI GCNGC 3 cut(s) 78, 219, 663
FokI GGATG 2 cut(s) 40, 581
Fsp4HI GCNGC 3 cut(s) 78, 219, 663
FspBI CTAG 3 cut(s) 41, 195, 449
GlaI GCGC 4 cut(s) 64, 66, 68, 381
GluI GCNGC 3 cut(s) 78, 219, 663
HaeIII GGCC 3 cut(s) 5, 109, 456
HapII CCGG 2 cut(s) 96, 443
HhaI GCGC 4 cut(s) 65, 67, 69, 382
Hin1II CATG 3 cut(s) 138, 205, 593
Hin6I GCGC 4 cut(s) 63, 65, 67, 380
HinP1I GCGC 4 cut(s) 63, 65, 67, 380
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 514, 649
HpaII CCGG 2 cut(s) 96, 443
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 170, 272
HpyAV CCTTC 3 cut(s) 481, 676, 698
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4V TGCA 3 cut(s) 209, 400, 430
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 173, 206, 215, 350, 476, 668
HpyF3I CTNAG 3 cut(s) 117, 149, 606
Hsp92II CATG 3 cut(s) 138, 205, 593
HspAI GCGC 4 cut(s) 63, 65, 67, 380
Kzo9I GATC 1 cut(s) 632
LmnI GCTCC 3 cut(s) 155, 350, 659
Lsp1109I GCAGC 3 cut(s) 64, 205, 649
LweI GCATC 2 cut(s) 220, 457
MaeI CTAG 3 cut(s) 41, 195, 449
MaeIII GTNAC 1 cut(s) 408
MalI GATC 1 cut(s) 634
MbiI CCGCTC 1 cut(s) 353
MboI GATC 1 cut(s) 632
MboII GAAGA 5 cut(s) 317, 320, 399, 527, 578
MfeI CAATTG 2 cut(s) 288, 345
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 91, 183, 288, 345, 424, 554
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 6 cut(s) 112, 115, 144, 377, 383, 396
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 339, 540, 618, 712
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 2 cut(s) 96, 443
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 2 cut(s) 288, 345
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 3 cut(s) 65, 67, 382
MwoI GCNNNNNNNGC 7 cut(s) 164, 173, 206, 215, 350, 476, 668
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 632
NheI GCTAGC 1 cut(s) 448
NlaIII CATG 3 cut(s) 138, 205, 593
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 184
NspV TTCGAA 1 cut(s) 360
PauI GCGCGC 2 cut(s) 63, 65
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 3 cut(s) 79, 220, 664
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 402
PteI GCGCGC 2 cut(s) 63, 65
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 4 cut(s) 339, 540, 618, 712
SatI GCNGC 3 cut(s) 78, 219, 663
Sau3AI GATC 1 cut(s) 632
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 223
SfaNI GCATC 2 cut(s) 220, 457
SfcI CTRYAG 2 cut(s) 327, 398
SfuI TTCGAA 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 6 cut(s) 91, 183, 288, 345, 424, 554
SsiI CCGC 1 cut(s) 353
SspI AATATT 1 cut(s) 582
SspMI CTAG 3 cut(s) 41, 195, 449
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 3 cut(s) 81, 201, 655
TaaI ACNGT 1 cut(s) 524
TaqI TCGA 2 cut(s) 303, 360
TaqII GACCGA 1 cut(s) 46
TasI AATT 6 cut(s) 91, 183, 288, 345, 424, 554
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 339, 540, 618, 712
Tru9I TTAA 4 cut(s) 339, 540, 618, 712
TseI GCWGC 3 cut(s) 77, 218, 662
TspDTI ATGAA 2 cut(s) 296, 578
TspGWI ACGGA 2 cut(s) 387, 526
Vha464I CTTAAG 1 cut(s) 539
XapI RAATTY 3 cut(s) 91, 183, 424
XspI CTAG 3 cut(s) 41, 195, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.