FvH4_6g00410

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016218
Physical Location & Seq
Reverse (-)
275084 .. 276787
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00410.t1

Sequence Viewer

Length: 975 bp
ATGATGATGATCATGATGATGAATAGCTGCTGCACTTCTTGTACTAGTGCTTCTACTTTCACCGCGCTCCTTGCAGCAACAACCGCCACCACCACCAGCTGCTGCCTTCGCCGTCGCCAAACCAAAGCTGCTGCTGCTAGTAAATCAGTATTTTTCATCTCCAATCCTTTTAGCACTGCGTCTTCCTTCCAAGATTCACACCATCCTTTTTTACTGCGTGTAACAAATGATCAGGGCAGGGCTGAATTGTGTGACTCTGATAAAGAGTATCTGAGATCAGAGGCTGATAGAATTGTAGATGGGTTGAATTTTGGGGAGCTTTGCAATGAGTTTGAGTGCATTAGCAGCCCCTTGGTCGAGTCCACTGCTCGGCAGCTTGTCCGCGACATCCTTGAGCTTCGCGAAGGCAATCGTGCCCTTGGAACCTTTGCTCTTTCCGTTCAATACAAGGACCCCGTTAGAAGTTTTAGTGGTCGTGACAAGTACAAGAGACCACTCTGGATAACCACTGCACTGGAGAAGCCTTCTGTGAGTGTTCAAGAAATGAGCATGTTATCGACCAGTGTGCTAAGTATCAAATGGACAGTCAAAGGCAAACCCAAGAACATTCCAGTAGGAGATTTGATTGTAAAAATCAACTCCCAATTCACTCTGAACCAGATCAGTGGCCAAGTGACTCAACATGAAGAGTTTTGGGATTTATCAGCTTCTTCATTCATTTCACAAGCCTATTTCTGGACGTCGCGTCGTCTGTTTGCAGCAATTGAGGGTGGAAAAGACTTGACTGATGCAGTTAAAAGTCTTTCCAGCCGCTTCCCAACAGAAAAACAGAACATGGAAATTTTTCGCGACCCTTCTGGTGATCCAACCAAGTTCTTCCAAAGGGACGACGGTTTCCAAAGAGATGTGTATCAATTTGCTCTGTTCGTGGCACTAATCTATTTTGTTGTACAGCTTTTAAAAATAACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

325

Amino Acids

36.46

Weight (kDa)

8.37

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 143 - 228 9.3e-06 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65230
fragaria_vesca FvH4_6g00410
malus_domestica MD04G1245900.v1.1 MD12G1264100.v1.1
prunus_persica Prupe.6G362300_v2.0.a1
pyrus_communis pycom04g21680
rosa_chinensis RchiOBHm_Chr3g0447741
rosa_laevigata RLG00000025974
rosa_multiflora Rmu_ssc0000391.1_g000014
rosa_roxburghii Rroxscaffold_6G00425940
rosa_rugosa Rorug02G0605200 Rorug02G0605200
rosa_samantha Rh3AG004900 Rh3CG004900
rosa_wichuraiana Rw3G000360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 743
AccII CGCG 5 cut(s) 65, 384, 402, 745, 849
AciI CCGC 4 cut(s) 63, 84, 382, 811
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 2 cut(s) 307, 840
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 3 cut(s) 43, 485, 951
AfiI CCNNNNNNNGG 2 cut(s) 369, 735
AgsI TTSAA 3 cut(s) 307, 443, 539
AhdI GACNNNNNGTC 1 cut(s) 744
AhlI ACTAGT 1 cut(s) 44
AluBI AGCT 8 cut(s) 27, 99, 128, 319, 376, 397, 707, 955
AluI AGCT 8 cut(s) 27, 99, 128, 319, 376, 397, 707, 955
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 1 cut(s) 857
AlwNI CAGNNNCTG 2 cut(s) 102, 284
AoxI GGCC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 307, 840
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 52, 872
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 669
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 2 cut(s) 210, 293
BceAI ACGGC 1 cut(s) 96
BcgI CGANNNNNNTGC 4 cut(s) 347, 381, 547, 581
BclI TGATCA 2 cut(s) 9, 229
BcoDI GTCTC 1 cut(s) 484
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 2 cut(s) 45, 138
Bme18I GGWCC 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 424, 453
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 2 cut(s) 8, 909
BsaHI GRCGYC 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 351, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 735
Bse1I ACTGG 3 cut(s) 519, 561, 611
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 2 cut(s) 8, 909
BseDI CCNNGG 2 cut(s) 351, 418
BseGI GGATG 2 cut(s) 202, 387
BseJI GATNNNNATC 2 cut(s) 8, 909
BseLI CCNNNNNNNGG 2 cut(s) 369, 735
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 3 cut(s) 519, 561, 611
BseSI GKGCMC 1 cut(s) 418
BsgI GTGCAG 2 cut(s) 16, 495
Bsh1236I CGCG 5 cut(s) 65, 384, 402, 745, 849
BshFI GGCC 1 cut(s) 669
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 2 cut(s) 369, 735
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 418
Bsp1407I TGTACA 1 cut(s) 949
Bsp143I GATC 5 cut(s) 9, 229, 275, 660, 862
Bsp68I TCGCGA 2 cut(s) 402, 849
BspACI CCGC 4 cut(s) 63, 84, 382, 811
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 5 cut(s) 65, 384, 402, 745, 849
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 424, 453
BspPI GGATC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 949
BsrI ACTGG 3 cut(s) 519, 561, 611
BssECI CCNNGG 2 cut(s) 351, 418
BssMI GATC 5 cut(s) 9, 229, 275, 660, 862
BssNI GRCGYC 1 cut(s) 740
BssT1I CCWWGG 2 cut(s) 351, 418
Bst4CI ACNGT 2 cut(s) 586, 893
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 740
BstAUI TGTACA 1 cut(s) 949
BstDEI CTNAG 2 cut(s) 272, 569
BstF5I GGATG 2 cut(s) 202, 387
BstFNI CGCG 5 cut(s) 65, 384, 402, 745, 849
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 5 cut(s) 12, 232, 278, 663, 865
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 5 cut(s) 9, 229, 275, 660, 862
BstMWI GCNNNNNNNGC 5 cut(s) 71, 83, 108, 134, 345
BstNSI RCATGY 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 5 cut(s) 65, 384, 402, 745, 849
BstV2I GAAGAC 1 cut(s) 174
BstXI CCANNNNNNTGG 2 cut(s) 514, 665
BsuRI GGCC 1 cut(s) 669
BtsCI GGATG 2 cut(s) 202, 387
BtsI GCAGTG 3 cut(s) 174, 363, 507
BtsIMutI CAGTG 6 cut(s) 174, 363, 507, 512, 568, 670
BtuMI TCGCGA 2 cut(s) 402, 849
CaiI CAGNNNCTG 2 cut(s) 102, 284
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 2 cut(s) 168, 734
Csp6I GTAC 3 cut(s) 42, 484, 950
CviAII CATG 4 cut(s) 13, 550, 683, 835
CviQI GTAC 3 cut(s) 42, 484, 950
DdeI CTNAG 2 cut(s) 272, 569
DpnI GATC 5 cut(s) 11, 231, 277, 662, 864
DpnII GATC 5 cut(s) 9, 229, 275, 660, 862
DraI TTTAAA 1 cut(s) 960
DriI GACNNNNNGTC 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 681
Eam1105I GACNNNNNGTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 351, 418
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 351, 418
ErhI CCWWGG 2 cut(s) 351, 418
FaeI CATG 4 cut(s) 16, 553, 686, 838
FaiI YATR 4 cut(s) 14, 551, 684, 836
FaqI GGGAC 1 cut(s) 899
FatI CATG 4 cut(s) 12, 549, 682, 834
FbaI TGATCA 2 cut(s) 9, 229
FokI GGATG 2 cut(s) 189, 374
FspBI CTAG 2 cut(s) 45, 138
GlaI GCGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 1 cut(s) 669
HgaI GACGC 2 cut(s) 168, 734
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 4 cut(s) 16, 553, 686, 838
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 4 cut(s) 194, 254, 359, 676
HphI GGTGA 2 cut(s) 52, 872
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 4 cut(s) 259, 273, 280, 654
Hpy188III TCNNGA 7 cut(s) 13, 401, 476, 499, 539, 736, 848
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 4 cut(s) 117, 745, 750, 893
HpyAV CCTTC 5 cut(s) 116, 196, 398, 534, 864
HpyCH4III ACNGT 2 cut(s) 586, 893
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 7 cut(s) 33, 74, 324, 339, 512, 758, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 83, 108, 134, 345
HpyF3I CTNAG 2 cut(s) 272, 569
HpySE526I ACGT 1 cut(s) 740
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 4 cut(s) 16, 553, 686, 838
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 9, 229
Kzo9I GATC 5 cut(s) 9, 229, 275, 660, 862
LmnI GCTCC 2 cut(s) 72, 316
LweI GCATC 1 cut(s) 778
MaeI CTAG 2 cut(s) 45, 138
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 4 cut(s) 220, 251, 476, 673
MalI GATC 5 cut(s) 11, 231, 277, 662, 864
MboI GATC 5 cut(s) 9, 229, 275, 660, 862
MboII GAAGA 4 cut(s) 174, 698, 702, 868
MfeI CAATTG 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 418
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 7 cut(s) 245, 291, 307, 644, 762, 840, 914
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 3 cut(s) 248, 368, 670
MmeI TCCRAC 1 cut(s) 890
MnlI CCTC 2 cut(s) 274, 760
Mox20I TGGCCA 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 843
MscI TGGCCA 1 cut(s) 669
MseI TTAA 2 cut(s) 795, 959
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 99
MunI CAATTG 1 cut(s) 762
MvnI CGCG 5 cut(s) 65, 384, 402, 745, 849
MwoI GCNNNNNNNGC 5 cut(s) 71, 83, 108, 134, 345
NdeII GATC 5 cut(s) 9, 229, 275, 660, 862
NlaIII CATG 4 cut(s) 16, 553, 686, 838
NlaIV GGNNCC 2 cut(s) 424, 453
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 3 cut(s) 251, 476, 673
NruI TCGCGA 2 cut(s) 402, 849
NspI RCATGY 1 cut(s) 553
PagI TCATGA 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 3 cut(s) 248, 367, 670
PpsI GAGTC 3 cut(s) 248, 367, 670
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 424, 453
PspPI GGNCC 1 cut(s) 451
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 2 cut(s) 102, 284
PvuII CAGCTG 1 cut(s) 99
RruI TCGCGA 2 cut(s) 402, 849
RsaI GTAC 3 cut(s) 43, 485, 951
RsaNI GTAC 3 cut(s) 42, 484, 950
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 795, 959
Sau3AI GATC 5 cut(s) 9, 229, 275, 660, 862
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 3 cut(s) 248, 368, 670
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 778
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 7 cut(s) 245, 291, 307, 644, 762, 840, 914
SsiI CCGC 4 cut(s) 63, 84, 382, 811
SspMI CTAG 2 cut(s) 45, 138
StyI CCWWGG 2 cut(s) 351, 418
TaaI ACNGT 2 cut(s) 586, 893
TaiI ACGT 1 cut(s) 743
TaqI TCGA 2 cut(s) 357, 557
TasI AATT 7 cut(s) 245, 291, 307, 644, 762, 840, 914
TatI WGTACW 3 cut(s) 41, 483, 949
TauI GCSGC 1 cut(s) 813
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 795, 959
Tru9I TTAA 2 cut(s) 795, 959
TscAI CASTG 6 cut(s) 181, 370, 514, 519, 568, 670
TseFI GTSAC 3 cut(s) 251, 476, 673
Tsp45I GTSAC 3 cut(s) 251, 476, 673
TspDTI ATGAA 5 cut(s) 35, 145, 699, 702, 706
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 6 cut(s) 181, 370, 514, 519, 568, 670
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 2 cut(s) 307, 840
XceI RCATGY 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 2 cut(s) 45, 138
ZraI GACGTC 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.