FvH4_6g01310

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010024
Physical Location & Seq
Reverse (-)
706404 .. 715226
8823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01310.t2

Sequence Viewer

Length: 2916 bp
ATGATGACGGTTCACGGCGAGGCCAGGCCGGCTAGGGCTCAGTTCGGTGTCGAATCGTTTAAGCCTGAGCCGTCCTCGCTCAGCTTGGTGTCGTTCAAGCCTCCTGAGAATCATGAAGTGGATGAGGATGCGCATTTGGCACTTGCTCACCAAATGTACAAGGCCGGCAACTATAAGGAGGCGCTGGAGCATAGCAGTATTGTGTATGAGAGGAATCCGATTCGAACCGATAATCTCCTTCTTTTGGGAGCAATATATTATCAGTTGCATGAATTTGATATGTGTATTGCCAAAAATGAAGAAGCGCTTCGAATTGAGCCACATTTTGCGGAGTGTTATGGTAACATGGCCAATGCTTGGAAGGAAAAAGGCAATAGTGACCTTGCAATCCGCTACTATTTGATTGCTATTGAGCTTCGACCCAATTTCTGTGATGCATGGTCAAACTTAGCTAGTGCGTACATGCGGAAAGGCAGGCTTGAAGAGGCAGCCCAGTGCTGTCGTCAGGCACTTCAACTGAATCCCCATTTGGTTGACGCCCATAGCAACCTTGGTAATTTAATGAAAGCACGAGGCTTGGTACAAGAAGCATACAGTTGCTACCTTGAGGCTCTCCGTATACAACCAAACTTTGCTATTGCTTGGTCAAATCTTGCTGGCCTTTTCATGGAGTCTGGTGATCTTAATAGAGCTCTGCAGTATTATAAGGAGGCTGTGAAACTCAAACCTGCTTTTCCGGATGCGTATCTCAACCTTGGGAATGTTTATAAGGCTTTGGGATTGCCCCAAGAGGCAATTGTGTGTTATCAGCGTGCACTGCAGACAAGACCTAATTATGCCATGGCTTACGGTAATCTGGCCAGTACGTATTATGAGCAAGGTCAACTGGAATTGGCAGTCTTACATTACAAGCAAGCCATTGTTTGTGATCCAAGATTTTTGGAGGCTTACAATAATTTGGGTAATGCTTTGAAAGACGTTGGCAGAGTGGACGAAGCAATTCAATGCTACAATCAATGCCTCACTTTACAACCTAATCATCCACAAGCACTTACCAACCTTGGGAATATTTATATGGAATGGTGTGTGATTCTCAAGAACATGGTACCTGCTGCTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCTCCTTTCAATAATCTTGCTATTATCTATAAACAACAGGGAAATTACGCAGATGCGATTTCATGCTACAATGAGGTTCTGCGCATTGATCCCTTGGCAGCTGATGGGCTTGTCAACAGGGGTAACACTTACAAGGAGATTGGTAGAGTTAGTGAGGCAATTCAGGATTACATACATGCAATATCTGTACGGCCAACAATGGCTGAAGCTCATGCAAACTTGGCTTCAGCTTACAAGGATAGTGGACATGTGGAGGCTGCTATCAAGAGCTATAAACAGGCATTACATCTTCGACCGGACTTTCCAGAGGCAACCTGTAACCTTTTACATACGTTACAGTGTGTGTGCAGTTGGGAGGACCGTGACAAAATGTTTGCGGAAGTTGAAGGGATTATCAGGAGGCAGATCAATATGTCTCTCTTGCCTAGTGTGCAACCTTTCCATGCAATAGCATATCCTATTGATTCATTGCTTGCGCTTGATATTAGTCGTAAGTATGCTGCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGCCTGCCTTCAACCATCCTGCTCCCATCCCTATAAAGCGTAATGGTGGATTCGAGAGGCTCAGAGTTGGATATGTAAGCAGTGACTTTGGTAACCACCCATTGTCACATCTTATGGGATCTGTTTTTGGGATGCACAACAAGGAGAATGTTGAGGTTTTCTGTTATGCCTTGAGTCCGAATGATGGAACGGAATGGAGACAGCGTACCCAGTCTGAAGCCGAGCACTTTGTTGATGTCTCAGCCATGACATCTGATGTGATTGCCAAAATGATTAATGAGGACAACATCCAGATTTTAATCAATCTTAATGGTTATACAAAGGGGGCAAGAAATGAAATATTTGCTATGCAGCCTGCACCTATTCAGGTTTCATATATGGGGTTCCCTGGAACCACTGGGGCCAATTATATTGATTACTTGGTCACCGATGAGTTTGTCTCACCTTTACGCTACTCACATATTTACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTATAAGCAGAAAAATCAGGATGTATTGGATCCAAATTGTCGGCACAGAAGATTAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCGACCTTCAATCAGTTGTACAAAATGGACCCTGAAATCTTTAATACTTGGTGCAATATTCTTAAACGTGTACCCAACAGTGCACTCTGGCTCCTCAGATTCCCAGCAGCAGGCGAAATGAGACTCCGTGCATATGCTGCTGCTCAAGGAGTGCAGGCAGACCAAATTATTTTTACAGATGTTGCTATGAAAGGTGAACATATCAGGCGCAGTGCTTTGGCAGATTTGTTCCTTGACACGCCTTTATGCAATGCACATACTACCGGAACAGATGTTCTATGGGCAGGTCTACCAATGGTGACCCTTCCCCTTGAGAAGATGGCCACCAGGGTTGCTGGATCTTTGTGTCTCGCCACTGGACTGGGGGATGAGATGATAGTTAACAGTATGAAAGAGTATGAAGAGAAGGCTGTATCTCTGGCATTGAATCCCCCAAAGCTCCAGGCACTTACTAACAAGCTCAAGGCAGTCCGAATGACTTGCCCTCTGTTTGACACAGCACGCTGGGTGAGGAATCTGGAAAGGTCTTATTTCAAAATGTGGAATCTGCATTGCTCGGGCCAGCGTCCCCAGCATTTTAAAGTTGCTGAGAATGATTCGGATTTCCCCTATGATAGGTAG

Protein Analysis

972

Amino Acids

109.59

Weight (kDa)

6.33

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 122 - 175 2.6e-07 Tetratricopeptide repeat
TPR_8 PF13181 145 - 175 2.8e-06 Tetratricopeptide repeat
TPR_1 PF00515 145 - 176 6.9e-10 Tetratricopeptide repeat
TPR_2 PF07719 145 - 176 1.2e-08 Tetratricopeptide repeat
TPR_11 PF13414 152 - 190 3e-08 TPR repeat
TPR_1 PF00515 212 - 243 8.9e-06 Tetratricopeptide repeat
TPR_11 PF13414 222 - 260 5.6e-11 TPR repeat
TPR_19 PF14559 223 - 278 9.1e-08 Tetratricopeptide repeat
TPR_1 PF00515 246 - 279 7.3e-10 Tetratricopeptide repeat
TPR_2 PF07719 246 - 279 5.4e-06 Tetratricopeptide repeat
TPR_12 PF13424 248 - 307 1.5e-10 Tetratricopeptide repeat
TPR_16 PF13432 250 - 311 2.1e-06 Tetratricopeptide repeat
TPR_11 PF13414 264 - 294 1.5e-06 TPR repeat
TPR_1 PF00515 280 - 313 5.1e-06 Tetratricopeptide repeat
TPR_11 PF13414 289 - 328 3.8e-10 TPR repeat
TPR_17 PF13431 302 - 335 1.9e-06 Tetratricopeptide repeat
TPR_12 PF13424 314 - 376 6.8e-07 Tetratricopeptide repeat
TPR_1 PF00515 315 - 347 1.4e-09 Tetratricopeptide repeat
TPR_8 PF13181 315 - 347 8.1e-08 Tetratricopeptide repeat
TPR_2 PF07719 315 - 347 4.6e-07 Tetratricopeptide repeat
TPR_11 PF13414 321 - 359 3.7e-08 TPR repeat
TPR_1 PF00515 385 - 413 6.6e-08 Tetratricopeptide repeat
TPR_2 PF07719 386 - 413 1.5e-06 Tetratricopeptide repeat
TPR_9 PF13371 390 - 453 3.5e-06 Tetratricopeptide repeat
TPR_11 PF13414 391 - 430 1.6e-07 TPR repeat
TPR_11 PF13414 423 - 464 2.6e-07 TPR repeat
TPR_1 PF00515 450 - 483 2.8e-06 Tetratricopeptide repeat
TPR_11 PF13414 458 - 490 1.6e-06 TPR repeat
Glyco_transf_41 PF13844 497 - 735 7.2e-84 Glycosyl transferase family 41
Glyco_transf_41 PF13844 748 - 933 1e-67 Glycosyl transferase family 41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 705, 768
Acc16I TGCGCA 2 cut(s) 132, 1244
Acc36I ACCTGC 3 cut(s) 736, 1117, 2570
Acc65I GGTACC 1 cut(s) 1105
AccB1I GGYRCC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 357
AccI GTMKAC 2 cut(s) 619, 2584
AccIII TCCGGA 1 cut(s) 736
AciI CCGC 4 cut(s) 329, 391, 466, 1538
AclWI GGATC 6 cut(s) 923, 1244, 1822, 2231, 2244, 2641
AcoI YGGCCR 4 cut(s) 348, 858, 1352, 2616
AcsI RAATTY 2 cut(s) 272, 2285
AcuI CTGAAG 3 cut(s) 1371, 1386, 1932
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 9 cut(s) 158, 461, 582, 865, 1107, 1350, 1903, 2315, 2367
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 7 cut(s) 244, 357, 667, 1062, 1880, 2405, 2910
AflIII ACRYGT 2 cut(s) 1408, 2362
AjnI CCWGG 4 cut(s) 23, 2083, 2621, 2736
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AloI GAACNNNNNNTCC 2 cut(s) 2553, 2585
Alw21I GWGCWC 5 cut(s) 694, 817, 1673, 1923, 2380
Alw26I GTCTC 7 cut(s) 1581, 1888, 1939, 2140, 2276, 2410, 2648
Alw44I GTGCAC 2 cut(s) 813, 2376
AlwI GGATC 6 cut(s) 923, 1244, 1822, 2231, 2244, 2641
Ama87I CYCGRG 1 cut(s) 2851
Aor13HI TCCGGA 1 cut(s) 736
Aor51HI AGCGCT 1 cut(s) 306
ApaLI GTGCAC 2 cut(s) 813, 2376
ApoI RAATTY 2 cut(s) 272, 2285
ArsI GACNNNNNNTTYG 2 cut(s) 1517, 1549
AseI ATTAAT 1 cut(s) 1971
Asp700I GAANNNNTTC 2 cut(s) 306, 999
Asp718I GGTACC 1 cut(s) 1105
AspLEI GCGC 6 cut(s) 133, 184, 307, 1245, 1639, 2505
AspS9I GGNCC 4 cut(s) 1519, 2097, 2323, 2854
AsuC2I CCSGG 1 cut(s) 1687
AsuHPI GGTGA 7 cut(s) 140, 689, 2113, 2130, 2501, 2605, 2815
AsuII TTCGAA 2 cut(s) 223, 310
AvaI CYCGRG 1 cut(s) 2851
AvaII GGWCC 2 cut(s) 1519, 2323
BaeGI GKGCMC 2 cut(s) 817, 2380
BalI TGGCCA 3 cut(s) 350, 860, 2618
BamHI GGATCC 1 cut(s) 2236
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 2 cut(s) 40, 694
BauI CACGAG 1 cut(s) 570
Bbv12I GWGCWC 5 cut(s) 694, 817, 1673, 1923, 2380
BccI CCATC 5 cut(s) 1259, 1719, 1730, 1874, 2608
BceAI ACGGC 3 cut(s) 31, 55, 1367
BcgI CGANNNNNNTGC 2 cut(s) 2757, 2791
BciT130I CCWGG 4 cut(s) 25, 2085, 2623, 2738
BcnI CCSGG 1 cut(s) 1687
BcoDI GTCTC 7 cut(s) 1581, 1888, 1939, 2140, 2276, 2410, 2648
BfaI CTAG 3 cut(s) 33, 453, 1587
BfmI CTRYAG 2 cut(s) 695, 818
BfoI RGCGCY 2 cut(s) 185, 308
BfuAI ACCTGC 3 cut(s) 736, 1117, 2570
BglI GCCNNNNNGGC 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 80
Bme1390I CCNGG 5 cut(s) 25, 1687, 2085, 2623, 2738
Bme18I GGWCC 2 cut(s) 1519, 2323
BmeT110I CYCGRG 1 cut(s) 2851
BmgT120I GGNCC 4 cut(s) 1519, 2097, 2323, 2854
BmiI GGNNCC 7 cut(s) 1107, 2081, 2089, 2098, 2238, 2325, 2387
BmrFI CCNGG 5 cut(s) 25, 1687, 2085, 2623, 2738
BmrI ACTGGG 5 cut(s) 487, 1161, 1900, 2103, 2666
BmsI GCATC 6 cut(s) 118, 424, 730, 1204, 1691, 1818
BmuI ACTGGG 5 cut(s) 487, 1161, 1900, 2103, 2666
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 2120, 2152
BpmI CTGGAG 2 cut(s) 206, 2720
Bpu10I CCTNAGC 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 2 cut(s) 223, 310
BpuEI CTTGAG 6 cut(s) 626, 1079, 1888, 2424, 2627, 2741
BpuMI CCSGG 1 cut(s) 1687
BsaAI YACGTR 1 cut(s) 867
BsaBI GATNNNNATC 2 cut(s) 744, 1994
BsaHI GRCGYC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 2276
BsaJI CCNNGG 7 cut(s) 550, 754, 840, 1060, 1254, 2083, 2622
BsaWI WCCGGW 3 cut(s) 736, 1456, 2558
BsaXI ACNNNNNCTCC 4 cut(s) 1885, 1915, 2370, 2400
Bsc4I CCNNNNNNNGG 7 cut(s) 244, 357, 667, 1062, 1880, 2405, 2910
Bse118I RCCGGY 2 cut(s) 28, 164
Bse1I ACTGG 8 cut(s) 493, 861, 891, 1156, 1906, 2098, 2656, 2661
Bse3DI GCAATG 4 cut(s) 1628, 2188, 2551, 2845
Bse8I GATNNNNATC 2 cut(s) 744, 1994
BseAI TCCGGA 1 cut(s) 736
BseBI CCWGG 4 cut(s) 25, 2085, 2623, 2738
BseDI CCNNGG 7 cut(s) 550, 754, 840, 1060, 1254, 2083, 2622
BseJI GATNNNNATC 2 cut(s) 744, 1994
BseLI CCNNNNNNNGG 7 cut(s) 244, 357, 667, 1062, 1880, 2405, 2910
BseMI GCAATG 4 cut(s) 1628, 2188, 2551, 2845
BseMII CTCAG 9 cut(s) 53, 57, 94, 96, 1771, 1950, 2157, 2404, 2874
BseNI ACTGG 8 cut(s) 493, 861, 891, 1156, 1906, 2098, 2656, 2661
BseRI GAGGAG 1 cut(s) 2378
BseSI GKGCMC 2 cut(s) 817, 2380
BseYI CCCAGC 3 cut(s) 2398, 2799, 2865
BsgI GTGCAG 4 cut(s) 1528, 1647, 2037, 2468
Bsh1285I CGRYCG 1 cut(s) 1457
BshNI GGYRCC 1 cut(s) 1105
BsiEI CGRYCG 1 cut(s) 1457
BsiHKAI GWGCWC 5 cut(s) 694, 817, 1673, 1923, 2380
BsiHKCI CYCGRG 1 cut(s) 2851
BsiSI CCGG 6 cut(s) 29, 165, 737, 1457, 1687, 2559
BslFI GGGAC 1 cut(s) 2847
BslI CCNNNNNNNGG 7 cut(s) 244, 357, 667, 1062, 1880, 2405, 2910
BsmAI GTCTC 7 cut(s) 1581, 1888, 1939, 2140, 2276, 2410, 2648
BsmFI GGGAC 1 cut(s) 2847
Bso31I GGTCTC 1 cut(s) 2276
BsoBI CYCGRG 1 cut(s) 2851
Bsp119I TTCGAA 2 cut(s) 223, 310
Bsp1286I GDGCHC 6 cut(s) 40, 694, 817, 1673, 1923, 2380
Bsp13I TCCGGA 1 cut(s) 736
Bsp1407I TGTACA 2 cut(s) 156, 2313
Bsp143I GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
Bsp1720I GCTNAGC 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 4 cut(s) 329, 391, 466, 1538
BspCNI CTCAG 9 cut(s) 52, 58, 93, 97, 1770, 1949, 2158, 2403, 2875
BspEI TCCGGA 1 cut(s) 736
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 7 cut(s) 1107, 2081, 2089, 2098, 2238, 2325, 2387
BspMAI CTGCAG 2 cut(s) 699, 822
BspMI ACCTGC 3 cut(s) 736, 1117, 2570
BspPI GGATC 6 cut(s) 923, 1244, 1822, 2231, 2244, 2641
BspT104I TTCGAA 2 cut(s) 223, 310
BspT107I GGYRCC 1 cut(s) 1105
BspTNI GGTCTC 1 cut(s) 2276
BsrDI GCAATG 4 cut(s) 1628, 2188, 2551, 2845
BsrFI RCCGGY 2 cut(s) 28, 164
BsrGI TGTACA 2 cut(s) 156, 2313
BsrI ACTGG 8 cut(s) 493, 861, 891, 1156, 1906, 2098, 2656, 2661
BssAI RCCGGY 2 cut(s) 28, 164
BssECI CCNNGG 7 cut(s) 550, 754, 840, 1060, 1254, 2083, 2622
BssMI GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
BssNAI GTATAC 1 cut(s) 620
BssNI GRCGYC 1 cut(s) 537
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 5 cut(s) 550, 754, 840, 1060, 1254
Bst1107I GTATAC 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 4 cut(s) 25, 2085, 2623, 2738
Bst4CI ACNGT 9 cut(s) 10, 596, 851, 1144, 1500, 1523, 1668, 2375, 2681
Bst6I CTCTTC 2 cut(s) 477, 2691
BstACI GRCGYC 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 2432
BstAUI TGTACA 2 cut(s) 156, 2313
BstBAI YACGTR 1 cut(s) 867
BstBI TTCGAA 2 cut(s) 223, 310
BstDSI CCRYGG 1 cut(s) 840
BstEII GGTNACC 3 cut(s) 1787, 2119, 2593
BstENI CCTNNNNNAGG 1 cut(s) 2908
BstH2I RGCGCY 2 cut(s) 185, 308
BstHHI GCGC 6 cut(s) 133, 184, 307, 1245, 1639, 2505
BstKTI GATC 7 cut(s) 682, 931, 1252, 1569, 1817, 2239, 2636
BstMAI GTCTC 7 cut(s) 1581, 1888, 1939, 2140, 2276, 2410, 2648
BstMBI GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
BstMCI CGRYCG 1 cut(s) 1457
BstMWI GCNNNNNNNGC 8 cut(s) 29, 76, 137, 817, 1382, 1591, 2432, 2866
BstNI CCWGG 4 cut(s) 25, 2085, 2623, 2738
BstNSI RCATGY 3 cut(s) 466, 1340, 1412
BstPI GGTNACC 3 cut(s) 1787, 2119, 2593
BstSCI CCNGG 5 cut(s) 23, 1685, 2083, 2621, 2736
BstSFI CTRYAG 2 cut(s) 695, 818
BstSLI GKGCMC 2 cut(s) 817, 2380
BstSNI TACGTA 1 cut(s) 867
BstX2I RGATCY 3 cut(s) 1814, 2236, 2633
BstXI CCANNNNNNTGG 1 cut(s) 2656
BstYI RGATCY 3 cut(s) 1814, 2236, 2633
BstZ17I GTATAC 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 840
BtsI GCAGTG 3 cut(s) 815, 1783, 2512
BtsIMutI CAGTG 9 cut(s) 500, 815, 1505, 1673, 1783, 2091, 2380, 2512, 2649
BveI ACCTGC 3 cut(s) 736, 1117, 2570
CciI TCATGA 1 cut(s) 112
CfoI GCGC 6 cut(s) 133, 184, 307, 1245, 1639, 2505
Cfr10I RCCGGY 2 cut(s) 28, 164
Cfr13I GGNCC 4 cut(s) 1519, 2097, 2323, 2854
CseI GACGC 2 cut(s) 545, 2849
Csp6I GTAC 9 cut(s) 157, 460, 581, 864, 1106, 1349, 1902, 2314, 2366
CspCI CAANNNNNGTGG 4 cut(s) 1384, 1419, 2608, 2643
CviQI GTAC 9 cut(s) 157, 460, 581, 864, 1106, 1349, 1902, 2314, 2366
DpnI GATC 7 cut(s) 681, 930, 1251, 1568, 1816, 2238, 2635
DpnII GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
DraI TTTAAA 1 cut(s) 2875
EaeI YGGCCR 4 cut(s) 348, 858, 1352, 2616
Eam1104I CTCTTC 2 cut(s) 477, 2691
EarI CTCTTC 2 cut(s) 477, 2691
Ecl136II GAGCTC 1 cut(s) 692
Eco105I TACGTA 1 cut(s) 867
Eco130I CCWWGG 5 cut(s) 550, 754, 840, 1060, 1254
Eco24I GRGCYC 2 cut(s) 40, 694
Eco31I GGTCTC 1 cut(s) 2276
Eco47I GGWCC 2 cut(s) 1519, 2323
Eco47III AGCGCT 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 1371, 1386, 1932
Eco88I CYCGRG 1 cut(s) 2851
Eco91I GGTNACC 3 cut(s) 1787, 2119, 2593
EcoICRI GAGCTC 1 cut(s) 692
EcoNI CCTNNNNNAGG 1 cut(s) 2908
EcoO65I GGTNACC 3 cut(s) 1787, 2119, 2593
EcoRII CCWGG 4 cut(s) 23, 2083, 2621, 2736
EcoT14I CCWWGG 5 cut(s) 550, 754, 840, 1060, 1254
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 40, 694
ErhI CCWWGG 5 cut(s) 550, 754, 840, 1060, 1254
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 462, 494
FaqI GGGAC 1 cut(s) 2847
FauNDI CATATG 1 cut(s) 2428
FblI GTMKAC 2 cut(s) 619, 2584
FriOI GRGCYC 2 cut(s) 40, 694
FspAI RTGCGCAY 1 cut(s) 132
FspBI CTAG 3 cut(s) 33, 453, 1587
FspI TGCGCA 2 cut(s) 132, 1244
GlaI GCGC 6 cut(s) 132, 183, 306, 1244, 1638, 2504
GsaI CCCAGC 3 cut(s) 2402, 2803, 2869
GsuI CTGGAG 2 cut(s) 206, 2720
HaeII RGCGCY 2 cut(s) 185, 308
HapII CCGG 6 cut(s) 29, 165, 737, 1457, 1687, 2559
HgaI GACGC 2 cut(s) 545, 2849
HhaI GCGC 6 cut(s) 133, 184, 307, 1245, 1639, 2505
Hin1I GRCGYC 1 cut(s) 537
Hin6I GCGC 6 cut(s) 131, 182, 305, 1243, 1637, 2503
HinP1I GCGC 6 cut(s) 131, 182, 305, 1243, 1637, 2503
HincII GTYRAC 5 cut(s) 535, 884, 1140, 1276, 2677
HindII GTYRAC 5 cut(s) 535, 884, 1140, 1276, 2677
HindIII AAGCTT 1 cut(s) 2171
HpaI GTTAAC 1 cut(s) 2677
HpaII CCGG 6 cut(s) 29, 165, 737, 1457, 1687, 2559
HphI GGTGA 7 cut(s) 140, 689, 2113, 2130, 2501, 2605, 2815
Hpy188I TCNGA 9 cut(s) 219, 1760, 1875, 1912, 1951, 2167, 2393, 2768, 2896
HpyAV CCTTC 7 cut(s) 248, 355, 1541, 1714, 2311, 2609, 2695
HpyCH4III ACNGT 9 cut(s) 10, 596, 851, 1144, 1500, 1523, 1668, 2375, 2681
HpyCH4IV ACGT 5 cut(s) 866, 978, 1136, 1493, 2362
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 76, 137, 817, 1382, 1591, 2432, 2866
HpySE526I ACGT 5 cut(s) 866, 978, 1136, 1493, 2362
Hsp92I GRCGYC 1 cut(s) 537
HspAI GCGC 6 cut(s) 131, 182, 305, 1243, 1637, 2503
Kpn2I TCCGGA 1 cut(s) 736
KpnI GGTACC 1 cut(s) 1109
KroI GCCGGC 2 cut(s) 28, 164
KroNI GCCGGC 2 cut(s) 30, 166
KspAI GTTAAC 1 cut(s) 2677
Kzo9I GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
LmnI GCTCC 7 cut(s) 187, 248, 1168, 1676, 1723, 2391, 2739
LweI GCATC 6 cut(s) 118, 424, 730, 1204, 1691, 1818
MaeI CTAG 3 cut(s) 33, 453, 1587
MaeII ACGT 5 cut(s) 866, 978, 1136, 1493, 2362
MalI GATC 7 cut(s) 681, 930, 1251, 1568, 1816, 2238, 2635
MboI GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
MboII GAAGA 7 cut(s) 311, 494, 1442, 2174, 2268, 2623, 2708
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 3 cut(s) 1814, 2236, 2633
MhlI GDGCHC 6 cut(s) 40, 694, 817, 1673, 1923, 2380
MlsI TGGCCA 3 cut(s) 350, 860, 2618
MluNI TGGCCA 3 cut(s) 350, 860, 2618
MlyI GAGTC 3 cut(s) 680, 1879, 2412
MmeI TCCRAC 1 cut(s) 1744
Mox20I TGGCCA 3 cut(s) 350, 860, 2618
Mph1103I ATGCAT 1 cut(s) 439
MroI TCCGGA 1 cut(s) 736
MroNI GCCGGC 2 cut(s) 28, 164
MroXI GAANNNNTTC 2 cut(s) 306, 999
MscI TGGCCA 3 cut(s) 350, 860, 2618
Msp20I TGGCCA 3 cut(s) 350, 860, 2618
MspA1I CMGCKG 1 cut(s) 1262
MspI CCGG 6 cut(s) 29, 165, 737, 1457, 1687, 2559
MspR9I CCNGG 5 cut(s) 25, 1687, 2085, 2623, 2738
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 4 cut(s) 25, 2085, 2623, 2738
MwoI GCNNNNNNNGC 8 cut(s) 29, 76, 137, 817, 1382, 1591, 2432, 2866
NaeI GCCGGC 2 cut(s) 30, 166
NciI CCSGG 1 cut(s) 1687
NcoI CCATGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 2428
NdeII GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
NgoMIV GCCGGC 2 cut(s) 28, 164
NlaIV GGNNCC 7 cut(s) 1107, 2081, 2089, 2098, 2238, 2325, 2387
NmeAIII GCCGAG 1 cut(s) 1942
NmuCI GTSAC 7 cut(s) 377, 1144, 1523, 1778, 1800, 2119, 2593
NsbI TGCGCA 2 cut(s) 132, 1244
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 3 cut(s) 466, 1340, 1412
NspV TTCGAA 2 cut(s) 223, 310
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 1408
PdiI GCCGGC 2 cut(s) 30, 166
PdmI GAANNNNTTC 2 cut(s) 306, 999
PflMI CCANNNNNTGG 1 cut(s) 357
PleI GAGTC 3 cut(s) 679, 1878, 2412
PpsI GAGTC 3 cut(s) 679, 1878, 2412
Ppu21I YACGTR 1 cut(s) 867
PscI ACATGT 1 cut(s) 1408
PshBI ATTAAT 1 cut(s) 1971
PsiI TTATAA 2 cut(s) 705, 768
Psp124BI GAGCTC 1 cut(s) 694
Psp6I CCWGG 4 cut(s) 23, 2083, 2621, 2736
PspEI GGTNACC 3 cut(s) 1787, 2119, 2593
PspFI CCCAGC 3 cut(s) 2398, 2799, 2865
PspGI CCWGG 4 cut(s) 23, 2083, 2621, 2736
PspN4I GGNNCC 7 cut(s) 1107, 2081, 2089, 2098, 2238, 2325, 2387
PspPI GGNCC 4 cut(s) 1519, 2097, 2323, 2854
PstI CTGCAG 2 cut(s) 699, 822
PsuI RGATCY 3 cut(s) 1814, 2236, 2633
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 9 cut(s) 158, 461, 582, 865, 1107, 1350, 1903, 2315, 2367
RsaNI GTAC 9 cut(s) 157, 460, 581, 864, 1106, 1349, 1902, 2314, 2366
SacI GAGCTC 1 cut(s) 694
Sau3AI GATC 7 cut(s) 679, 928, 1249, 1566, 1814, 2236, 2633
Sau96I GGNCC 4 cut(s) 1519, 2097, 2323, 2854
SchI GAGTC 3 cut(s) 680, 1879, 2412
ScrFI CCNGG 5 cut(s) 25, 1687, 2085, 2623, 2738
SduI GDGCHC 6 cut(s) 40, 694, 817, 1673, 1923, 2380
SfaNI GCATC 6 cut(s) 118, 424, 730, 1204, 1691, 1818
SfcI CTRYAG 2 cut(s) 695, 818
SfuI TTCGAA 2 cut(s) 223, 310
SinI GGWCC 2 cut(s) 1519, 2323
SmlI CTYRAG 6 cut(s) 605, 1094, 1867, 2439, 2606, 2756
SmoI CTYRAG 6 cut(s) 605, 1094, 1867, 2439, 2606, 2756
SnaBI TACGTA 1 cut(s) 867
SsiI CCGC 4 cut(s) 329, 391, 466, 1538
SspI AATATT 3 cut(s) 1069, 2037, 2353
SspMI CTAG 3 cut(s) 33, 453, 1587
SstI GAGCTC 1 cut(s) 694
StyD4I CCNGG 5 cut(s) 23, 1685, 2083, 2621, 2736
StyI CCWWGG 5 cut(s) 550, 754, 840, 1060, 1254
TaaI ACNGT 9 cut(s) 10, 596, 851, 1144, 1500, 1523, 1668, 2375, 2681
TaiI ACGT 5 cut(s) 869, 981, 1139, 1496, 2365
TaqI TCGA 6 cut(s) 51, 223, 310, 418, 1453, 1749
TatI WGTACW 2 cut(s) 156, 2313
TscAI CASTG 9 cut(s) 500, 822, 1505, 1673, 1783, 2098, 2380, 2512, 2656
TseFI GTSAC 7 cut(s) 377, 1144, 1523, 1778, 1800, 2119, 2593
Tsp45I GTSAC 7 cut(s) 377, 1144, 1523, 1778, 1800, 2119, 2593
TspGWI ACGGA 3 cut(s) 605, 1901, 2411
TspRI CASTG 9 cut(s) 500, 822, 1505, 1673, 1783, 2098, 2380, 2512, 2656
Van91I CCANNNNNTGG 1 cut(s) 357
VneI GTGCAC 2 cut(s) 813, 2376
VpaK11BI GGWCC 2 cut(s) 1519, 2323
VspI ATTAAT 1 cut(s) 1971
XagI CCTNNNNNAGG 1 cut(s) 2908
XapI RAATTY 2 cut(s) 272, 2285
XceI RCATGY 3 cut(s) 466, 1340, 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmiI GTMKAC 2 cut(s) 619, 2584
XmnI GAANNNNTTC 2 cut(s) 306, 999
XspI CTAG 3 cut(s) 33, 453, 1587
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.