Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003116.1

Orthogroup ID

OG0010024

Physical Location & Seq

Genomic Coordinates Forward (+)

124220 .. 125892

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003116.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgatgacggtgcacggcgaggtgaggctgccccaggcggtggcgtctagggctcagtttggtgtggagtcttttaagcctgagccttcttcgctcagcttagtctccttcaagcctccggattctcatgaagtggatgaggatgcgcatttggctattgctcaccaaatgtacaagtccggtaactataaagaggccttggagcgtagcaatatcgtatatgataggaatccaattcgaactgataacctccttcttttgggtgcaatatattatcagctgcatgactttgatatgtgtattgccaaaaatgaagaagcccttcgaattgaaccacattttgctgagtgttatggcaacatggccaatgcttggaaggaaaaaggcaatagtgaccttgctatccgctactatttgattgccattgagcttcgacccaatttctgtgatgcatggtcaaacttagctagtgcgtacatgcggaaaggaaggcttgaagaggcagcccagtgctgtcgtcaggcgcttcagctgaatccccatttggttgacgcccatagcaaccttggtaatttaatgaaagcacgaggcttggtgcaagaagtaagtcttaacaataaaatatcgttcgggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0016740 GO:0016757 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00514 ko04931 map00514 map04931

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

212

Amino Acids

23.98

Weight (kDa)

6.13

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04240 AT3G04240
fragaria_vesca	FvH4_6g01310 FvH4_6g01310 FvH4_6g01310
malus_domestica	MD04G1235300.v1.1 MD12G1253100.v1.1
prunus_persica	Prupe.6G355200_v2.0.a1 Prupe.6G355200_v2.0.a1
pyrus_communis	pycom04g20880 pycom12g23220
rosa_chinensis	RchiOBHm_Chr3g0448861
rosa_laevigata	RLG00000025870
rosa_multiflora	Rmu_sc0003116.1_g000022 Rmu_sc0027913.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427070
rosa_rugosa	Rorug02G0616800
rosa_samantha	Rh3AG015100 Rh3CG013800 Rh3DG015400
rosa_wichuraiana	Rw3G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccB7I	CCANNNNNTGG	2 cut(s)	40, 372
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	3 cut(s)	38, 406, 481
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	2 cut(s)	44, 552
AfaI	GTAC	2 cut(s)	173, 476
AfiI	CCNNNNNNNGG	3 cut(s)	40, 259, 372
AgsI	TTSAA	3 cut(s)	112, 332, 497
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	5 cut(s)	99, 280, 430, 467, 532
AluI	AGCT	5 cut(s)	99, 280, 430, 467, 532
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	109
Alw44I	GTGCAC	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	2 cut(s)	195, 363
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	28, 280, 503
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	148, 526
AsuHPI	GGTGA	2 cut(s)	34, 155
AsuII	TTCGAA	2 cut(s)	238, 325
BaeGI	GKGCMC	2 cut(s)	15, 636
BalI	TGGCCA	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	15, 267, 515
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	48, 468
BfoI	RGCGCY	1 cut(s)	527
BisI	GCNGC	3 cut(s)	29, 281, 504
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	3 cut(s)	30, 282, 505
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	133, 439
BmuI	ACTGGG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	95
Bpu14I	TTCGAA	2 cut(s)	238, 325
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	2 cut(s)	44, 552
BsaJI	CCNNGG	3 cut(s)	33, 198, 565
BsaWI	WCCGGW	2 cut(s)	118, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 259, 372
Bse1I	ACTGG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	33, 198, 565
BseGI	GGATG	2 cut(s)	142, 148
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	40, 259, 372
BseMII	CTCAG	4 cut(s)	68, 72, 109, 336
BseNI	ACTGG	1 cut(s)	508
BseSI	GKGCMC	2 cut(s)	15, 636
BseXI	GCAGC	3 cut(s)	15, 267, 515
BshFI	GGCC	2 cut(s)	197, 365
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	119, 180
BslI	CCNNNNNNNGG	3 cut(s)	40, 259, 372
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	197, 365
Bsp119I	TTCGAA	2 cut(s)	238, 325
Bsp1286I	GDGCHC	3 cut(s)	15, 55, 636
Bsp13I	TCCGGA	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	171
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	3 cut(s)	38, 406, 481
BspANI	GGCC	2 cut(s)	197, 365
BspCNI	CTCAG	4 cut(s)	67, 73, 108, 337
BspEI	TCCGGA	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	127
BspT104I	TTCGAA	2 cut(s)	238, 325
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	3 cut(s)	33, 198, 565
BssNI	GRCGYC	2 cut(s)	44, 552
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	198, 565
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	2 cut(s)	44, 552
BstAUI	TGTACA	1 cut(s)	171
BstBI	TTCGAA	2 cut(s)	238, 325
BstDEI	CTNAG	6 cut(s)	54, 81, 95, 100, 345, 463
BstF5I	GGATG	2 cut(s)	142, 148
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	148, 526
BstMAI	GTCTC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 91, 152
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	2 cut(s)	15, 636
BstV1I	GCAGC	3 cut(s)	15, 267, 515
BsuRI	GGCC	2 cut(s)	197, 365
BtsCI	GGATG	2 cut(s)	142, 148
BtsIMutI	CAGTG	2 cut(s)	515, 634
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	2 cut(s)	148, 526
CseI	GACGC	2 cut(s)	33, 560
Csp6I	GTAC	2 cut(s)	172, 475
CviAII	CATG	5 cut(s)	128, 284, 361, 453, 478
CviQI	GTAC	2 cut(s)	172, 475
DdeI	CTNAG	6 cut(s)	54, 81, 95, 100, 345, 463
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	198, 565
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	198, 565
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	198, 565
FaeI	CATG	5 cut(s)	131, 287, 364, 456, 481
FalI	AAGNNNNNCTT	6 cut(s)	306, 338, 477, 509, 594, 626
FatI	CATG	5 cut(s)	127, 283, 360, 452, 477
Fnu4HI	GCNGC	3 cut(s)	29, 281, 504
FokI	GGATG	2 cut(s)	149, 155
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	29, 281, 504
FspAI	RTGCGCAY	1 cut(s)	147
FspBI	CTAG	2 cut(s)	48, 468
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	2 cut(s)	147, 525
GluI	GCNGC	3 cut(s)	29, 281, 504
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	197, 365
HapII	CCGG	2 cut(s)	119, 180
HgaI	GACGC	2 cut(s)	33, 560
HhaI	GCGC	2 cut(s)	148, 526
Hin1I	GRCGYC	2 cut(s)	44, 552
Hin1II	CATG	5 cut(s)	131, 287, 364, 456, 481
Hin6I	GCGC	2 cut(s)	146, 524
HinP1I	GCGC	2 cut(s)	146, 524
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	68, 122, 229, 535
HpaII	CCGG	2 cut(s)	119, 180
HphI	GGTGA	2 cut(s)	34, 155
Hpy166II	GTNNAC	2 cut(s)	13, 550
Hpy188III	TCNNGA	2 cut(s)	119, 128
Hpy8I	GTNNAC	2 cut(s)	13, 550
HpyAV	CCTTC	6 cut(s)	96, 118, 263, 332, 370, 483
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	5 cut(s)	13, 266, 283, 452, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 91, 152
HpyF3I	CTNAG	6 cut(s)	54, 81, 95, 100, 345, 463
Hsp92I	GRCGYC	2 cut(s)	44, 552
Hsp92II	CATG	5 cut(s)	131, 287, 364, 456, 481
HspAI	GCGC	2 cut(s)	146, 524
Kpn2I	TCCGGA	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	20, 47, 93, 132, 193, 506, 521
Lsp1109I	GCAGC	3 cut(s)	15, 267, 515
LweI	GCATC	2 cut(s)	133, 439
MaeI	CTAG	2 cut(s)	48, 468
MaeIII	GTNAC	2 cut(s)	182, 392
MboII	GAAGA	3 cut(s)	81, 326, 509
MhlI	GDGCHC	3 cut(s)	15, 55, 636
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	4 cut(s)	234, 327, 439, 571
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	13, 18, 126, 133, 187, 260, 493, 581
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	1 cut(s)	454
MroI	TCCGGA	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	3 cut(s)	75, 575, 612
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	280, 532
MspI	CCGG	2 cut(s)	119, 180
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	50, 91, 152
NlaIII	CATG	5 cut(s)	131, 287, 364, 456, 481
NmuCI	GTSAC	1 cut(s)	392
NsbI	TGCGCA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	481
NspV	TTCGAA	2 cut(s)	238, 325
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	122, 229, 535
PflMI	CCANNNNNTGG	2 cut(s)	40, 372
PkrI	GCNGC	3 cut(s)	30, 282, 505
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PvuII	CAGCTG	2 cut(s)	280, 532
RsaI	GTAC	2 cut(s)	173, 476
RsaNI	GTAC	2 cut(s)	172, 475
SaqAI	TTAA	3 cut(s)	75, 575, 612
SatI	GCNGC	3 cut(s)	29, 281, 504
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	3 cut(s)	15, 55, 636
SetI	ASST	9 cut(s)	24, 101, 252, 282, 399, 432, 469, 534, 567
SfaNI	GCATC	2 cut(s)	133, 439
SfuI	TTCGAA	2 cut(s)	238, 325
Sse9I	AATT	4 cut(s)	234, 327, 439, 571
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	38, 406, 481
SspMI	CTAG	2 cut(s)	48, 468
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	198, 565
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	3 cut(s)	238, 325, 433
TasI	AATT	4 cut(s)	234, 327, 439, 571
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	122, 229, 535
Tru1I	TTAA	3 cut(s)	75, 575, 612
Tru9I	TTAA	3 cut(s)	75, 575, 612
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	28, 280, 503
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	144, 327, 593
TspRI	CASTG	1 cut(s)	515
Van91I	CCANNNNNTGG	2 cut(s)	40, 372
VneI	GTGCAC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	48, 468
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.