Rorug02G0616800

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004654
Physical Location & Seq
Reverse (-)
73510113 .. 73513225
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0616800.1

Sequence Viewer

Length: 975 bp
ATGTCTGCGACTTCGATTATCAACAGCGTTCGCCTCACCACCTCCGCCTCCACCTCTTCCGGCCTCTCTCCATCTTCTCAACCTAACTCATTCAACCCCAGGAAACCTACATTGTTGCGCGTTGCCTCTTCCAGATCCCCCCCAAACCTCATTCAAAACAAGCCCGTTTTCACCGTTCCATCCCCTGTTCCGGCTGAAGATATGGGGAAGAACTACGAGGAGGCCATTGCAGCTCTTCAGAAACTACTCAGTGAGAAGGGTGACCTGAAAACAGTTGCAGCTTCGAAAGTGGAGCAGATTACTGCTCAGTTGGCAACAGCCGACGACGGCTCCAATCCCTTTGATCCCGTGGACAGAATCAAAAGAGGCTTCATTCACTTCAAGAAAGAGAAATATGACAAAAACCCAGCACTATATGGTGAACTTGCCAAAGGTCAAGCCCCCAAGTTTATGTTGTTTGCATGCTCGGATTCCCGGGTTTGCCCATCCCACATTTTGGATATGCAGCCTGGTGAGGCTTTTGTGGTCCGTAATGTTGCAAATATGGTCCCTCCATTTGATAAGGTCAGGTACGCCGGAGTTGGGTCGGCCATTGAGTATGCTGTCTTGCATCTGAAGGTTTCATACATTGTGGTGATCGGGCACAGCGCTTGTGGTGGAATTAAGGGACTCCTGTCTTTTCCAGATGATGGACCAACTTCCACTGACTTCATAGAAGACTGGGTCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGCACTACATGAAGGTGCTTCCTTCCCTGAACTATGCACTCACTGTGAAAAGGAGGCTGTGAATGTTTCCATTGGAAATCTGCTGAGCTATCCTTTTGTGAGAGACGGGTTGGTGAACAAGACCCTTGGATTAAAGGGGGGCTACTATGATTTTGTCAAAGGAAACTTTGAGTTGTGGGATGTTGATTTTGGCCTTTCTCCAGACTTCTCCGTATGA

Protein Analysis

324

Amino Acids

35.05

Weight (kDa)

7.62

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 151 - 308 5.3e-41 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 496, 689
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 45
AclWI GGATC 2 cut(s) 129, 338
AcoI YGGCCR 2 cut(s) 588, 733
AcuI CTGAAG 3 cut(s) 216, 221, 635
AfaI GTAC 1 cut(s) 572
AfeI AGCGCT 1 cut(s) 649
AfiI CCNNNNNNNGG 4 cut(s) 190, 496, 582, 689
AgsI TTSAA 3 cut(s) 94, 155, 382
AjnI CCWGG 2 cut(s) 98, 508
AluBI AGCT 4 cut(s) 233, 281, 740, 846
AluI AGCT 4 cut(s) 233, 281, 740, 846
Alw26I GTCTC 1 cut(s) 855
AlwI GGATC 2 cut(s) 129, 338
Ama87I CYCGRG 1 cut(s) 474
Aor51HI AGCGCT 1 cut(s) 649
AoxI GGCC 5 cut(s) 61, 222, 588, 733, 949
ApeKI GCWGC 4 cut(s) 230, 278, 505, 740
AspLEI GCGC 2 cut(s) 120, 650
AspS9I GGNCC 3 cut(s) 526, 547, 692
AsuC2I CCSGG 2 cut(s) 475, 476
AsuHPI GGTGA 8 cut(s) 28, 163, 272, 431, 524, 646, 766, 883
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 3 cut(s) 526, 547, 692
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 1 cut(s) 735
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BbsI GAAGAC 1 cut(s) 723
BbvI GCAGC 4 cut(s) 242, 290, 517, 727
BccI CCATC 4 cut(s) 79, 187, 493, 683
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 100, 510
BcnI CCSGG 2 cut(s) 475, 476
BcoDI GTCTC 1 cut(s) 855
BfoI RGCGCY 1 cut(s) 651
BisI GCNGC 4 cut(s) 231, 279, 506, 741
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 4 cut(s) 232, 280, 507, 742
Bme1390I CCNGG 4 cut(s) 100, 475, 476, 510
Bme18I GGWCC 3 cut(s) 526, 547, 692
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 3 cut(s) 526, 547, 692
BmiI GGNNCC 2 cut(s) 331, 549
BmrFI CCNGG 4 cut(s) 100, 475, 476, 510
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 730
BoxI GACNNNNGTC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 942
Bpu1102I GCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 475, 476
BsaJI CCNNGG 4 cut(s) 98, 348, 474, 883
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 496, 582, 689
Bse1I ACTGG 1 cut(s) 725
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 100, 510
BseDI CCNNGG 4 cut(s) 98, 348, 474, 883
BseGI GGATG 3 cut(s) 179, 485, 943
BseLI CCNNNNNNNGG 4 cut(s) 190, 496, 582, 689
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 262, 320, 833
BseNI ACTGG 1 cut(s) 725
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 4 cut(s) 242, 290, 517, 727
BseYI CCCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 5 cut(s) 63, 224, 590, 735, 951
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 4 cut(s) 60, 191, 475, 576
BslFI GGGAC 2 cut(s) 533, 681
BslI CCNNNNNNNGG 4 cut(s) 190, 496, 582, 689
BsmAI GTCTC 1 cut(s) 855
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 2 cut(s) 533, 681
BsnI GGCC 5 cut(s) 63, 224, 590, 735, 951
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 645
Bsp143I GATC 3 cut(s) 134, 343, 636
Bsp1720I GCTNAGC 1 cut(s) 842
BspACI CCGC 1 cut(s) 45
BspANI GGCC 5 cut(s) 63, 224, 590, 735, 951
BspCNI CTCAG 3 cut(s) 261, 319, 834
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 331, 549
BspPI GGATC 2 cut(s) 129, 338
BspQI GCTCTTC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 725
BssECI CCNNGG 4 cut(s) 98, 348, 474, 883
BssMI GATC 3 cut(s) 134, 343, 636
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 100, 510
Bst4CI ACNGT 3 cut(s) 175, 274, 803
Bst6I CTCTTC 3 cut(s) 61, 133, 240
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 248, 306, 842
BstDSI CCRYGG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 3 cut(s) 179, 485, 943
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 120, 650
BstKTI GATC 3 cut(s) 137, 346, 639
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 3 cut(s) 134, 343, 636
BstMWI GCNNNNNNNGC 2 cut(s) 230, 311
BstNI CCWGG 2 cut(s) 100, 510
BstNSI RCATGY 1 cut(s) 465
BstPAI GACNNNNGTC 1 cut(s) 673
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 98, 473, 474, 508
BstSLI GKGCMC 1 cut(s) 645
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 242, 290, 517, 727
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 5 cut(s) 63, 224, 590, 735, 951
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 179, 485, 943
BtsIMutI CAGTG 3 cut(s) 256, 702, 799
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 2 cut(s) 120, 650
Cfr13I GGNCC 3 cut(s) 526, 547, 692
Cfr9I CCCGGG 1 cut(s) 474
Csp6I GTAC 1 cut(s) 571
CviAII CATG 2 cut(s) 462, 767
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 248, 306, 842
DpnI GATC 3 cut(s) 136, 345, 638
DpnII GATC 3 cut(s) 134, 343, 636
EaeI YGGCCR 2 cut(s) 588, 733
Eam1104I CTCTTC 3 cut(s) 61, 133, 240
EarI CTCTTC 3 cut(s) 61, 133, 240
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 883
Eco47I GGWCC 3 cut(s) 526, 547, 692
Eco47III AGCGCT 1 cut(s) 649
Eco57I CTGAAG 3 cut(s) 216, 221, 635
Eco88I CYCGRG 1 cut(s) 474
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 98, 508
EcoT14I CCWWGG 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 883
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 2 cut(s) 465, 770
FaqI GGGAC 2 cut(s) 533, 681
FatI CATG 2 cut(s) 461, 766
Fnu4HI GCNGC 4 cut(s) 231, 279, 506, 741
FokI GGATG 3 cut(s) 166, 472, 950
Fsp4HI GCNGC 4 cut(s) 231, 279, 506, 741
GlaI GCGC 2 cut(s) 119, 649
GluI GCNGC 4 cut(s) 231, 279, 506, 741
GsaI CCCAGC 1 cut(s) 410
GsuI CTGGAG 1 cut(s) 942
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 5 cut(s) 63, 224, 590, 735, 951
HapII CCGG 4 cut(s) 60, 191, 475, 576
HhaI GCGC 2 cut(s) 120, 650
Hin1II CATG 2 cut(s) 465, 770
Hin6I GCGC 2 cut(s) 118, 648
HinP1I GCGC 2 cut(s) 118, 648
HinfI GANTC 3 cut(s) 357, 470, 669
HpaII CCGG 4 cut(s) 60, 191, 475, 576
HphI GGTGA 8 cut(s) 28, 163, 272, 431, 524, 646, 766, 883
Hpy166II GTNNAC 3 cut(s) 352, 422, 874
Hpy188I TCNGA 3 cut(s) 240, 469, 615
Hpy188III TCNNGA 4 cut(s) 132, 382, 683, 959
Hpy8I GTNNAC 3 cut(s) 352, 422, 874
Hpy99I CGWCG 2 cut(s) 326, 329
HpyAV CCTTC 5 cut(s) 250, 610, 751, 764, 790
HpyCH4III ACNGT 3 cut(s) 175, 274, 803
HpyCH4V TGCA 7 cut(s) 230, 278, 461, 505, 539, 610, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 311
HpyF3I CTNAG 3 cut(s) 248, 306, 842
Hsp92II CATG 2 cut(s) 465, 770
HspAI GCGC 2 cut(s) 118, 648
Kzo9I GATC 3 cut(s) 134, 343, 636
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 292, 335
Lsp1109I GCAGC 4 cut(s) 242, 290, 517, 727
LweI GCATC 1 cut(s) 619
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 136, 345, 638
MboI GATC 3 cut(s) 134, 343, 636
MboII GAAGA 7 cut(s) 48, 66, 120, 209, 220, 227, 728
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 645
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 2 cut(s) 660, 729
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 1 cut(s) 663
Mox20I TGGCCA 1 cut(s) 735
MscI TGGCCA 1 cut(s) 735
MseI TTAA 2 cut(s) 663, 890
MslI CAYNNNNRTG 2 cut(s) 632, 771
Msp20I TGGCCA 1 cut(s) 735
MspI CCGG 4 cut(s) 60, 191, 475, 576
MspR9I CCNGG 4 cut(s) 100, 475, 476, 510
MvaI CCWGG 2 cut(s) 100, 510
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 230, 311
NciI CCSGG 2 cut(s) 475, 476
NdeII GATC 3 cut(s) 134, 343, 636
NlaIII CATG 2 cut(s) 465, 770
NlaIV GGNNCC 2 cut(s) 331, 549
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 284
PaeI GCATGC 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 357, 470
PflFI GACNNNGTC 1 cut(s) 722
PflMI CCANNNNNTGG 2 cut(s) 496, 689
PkrI GCNGC 4 cut(s) 232, 280, 507, 742
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
PshAI GACNNNNGTC 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 98, 508
PspEI GGTNACC 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 2 cut(s) 98, 508
PspN4I GGNNCC 2 cut(s) 331, 549
PspPI GGNCC 3 cut(s) 526, 547, 692
PsuI RGATCY 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 722
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 2 cut(s) 632, 771
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 663, 890
SatI GCNGC 4 cut(s) 231, 279, 506, 741
Sau3AI GATC 3 cut(s) 134, 343, 636
Sau96I GGNCC 3 cut(s) 526, 547, 692
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 4 cut(s) 100, 475, 476, 510
SduI GDGCHC 1 cut(s) 645
SfaNI GCATC 1 cut(s) 619
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 3 cut(s) 526, 547, 692
SmaI CCCGGG 1 cut(s) 476
SmiMI CAYNNNNRTG 2 cut(s) 632, 771
SphI GCATGC 1 cut(s) 465
Sse9I AATT 2 cut(s) 660, 729
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 98, 473, 474, 508
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 3 cut(s) 175, 274, 803
TaqI TCGA 2 cut(s) 14, 284
TasI AATT 2 cut(s) 660, 729
TfiI GAWTC 2 cut(s) 357, 470
Tru1I TTAA 2 cut(s) 663, 890
Tru9I TTAA 2 cut(s) 663, 890
TscAI CASTG 3 cut(s) 256, 709, 806
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 4 cut(s) 230, 278, 505, 740
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 361, 612, 700, 783
TspGWI ACGGA 2 cut(s) 518, 958
TspMI CCCGGG 1 cut(s) 474
TspRI CASTG 3 cut(s) 256, 709, 806
Tth111I GACNNNGTC 1 cut(s) 722
Van91I CCANNNNNTGG 2 cut(s) 496, 689
VpaK11BI GGWCC 3 cut(s) 526, 547, 692
XceI RCATGY 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.