Rorug02G0616700

U11 U12 small nuclear ribonucleoprotein 48 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004654
Physical Location & Seq
Reverse (-)
73499374 .. 73501600
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0616700.1

Sequence Viewer

Length: 408 bp
ATGATGCAAGTAGCTGTTTCTAGGCCTGCAGGACCAGCTCAGATCAATGGCACATGTCTTTCTCAATCACCTGGTACTGTACAAGAACCTCTCTACAACCGTGTTCCTGGTGATTACACTCGGCAGCATGGTGATTGGTCTCTAATAGGACTGCCTGTTTCTTTTGCTAGTACCATCCTTAGAAGTAGTTCTAAAATTGGGGTAGCAAGTGTTTTGAACATTTTGGATCACAAACTGGTTGATAATGTTGGAAGTTACATCTTAAGTTGTCAGACTTATGAGGGTAGTATATATGGGGAACCTGGTTCTGAAGCTCATGGGTTAAACGTCCCCTTTCCAGTGAATTACAATGATATTGGATATGCACACAGTATTAACTTTGTAATGGGAGAGAATCCAGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-U11-48K

Protein Analysis

135

Amino Acids

14.47

Weight (kDa)

5.36

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 67 - 107 2.5e-06 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 76, 81, 172
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 3 cut(s) 70, 106, 301
AluBI AGCT 4 cut(s) 14, 38, 314, 401
AluI AGCT 4 cut(s) 14, 38, 314, 401
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 234
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 60, 122, 143
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 3 cut(s) 72, 108, 303
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 21, 168
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 3 cut(s) 72, 108, 303
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 3 cut(s) 72, 108, 303
BsaI GGTCTC 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 240, 338
BseBI CCWGG 3 cut(s) 72, 108, 303
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 2 cut(s) 240, 338
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 42, 226
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 2 cut(s) 240, 338
BssMI GATC 2 cut(s) 42, 226
Bst2UI CCWGG 3 cut(s) 72, 108, 303
Bst4CI ACNGT 3 cut(s) 79, 101, 371
BstAFI CTTAAG 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 39, 179
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 45, 229
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 42, 226
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 3 cut(s) 72, 108, 303
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 70, 106, 301
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 32
CsiI ACCWGGT 2 cut(s) 70, 301
Csp6I GTAC 3 cut(s) 75, 80, 171
CviAII CATG 3 cut(s) 54, 128, 317
CviJI RGCY 5 cut(s) 14, 25, 38, 314, 401
CviKI_1 RGCY 5 cut(s) 14, 25, 38, 314, 401
CviQI GTAC 3 cut(s) 75, 80, 171
DdeI CTNAG 2 cut(s) 39, 179
DpnI GATC 2 cut(s) 44, 228
DpnII GATC 2 cut(s) 42, 226
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 3 cut(s) 70, 106, 301
FaeI CATG 3 cut(s) 57, 131, 320
FaiI YATR 8 cut(s) 55, 129, 279, 290, 292, 294, 318, 363
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 53, 127, 316
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 2 cut(s) 21, 168
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 3 cut(s) 57, 131, 320
HinfI GANTC 1 cut(s) 394
HphI GGTGA 3 cut(s) 60, 122, 143
Hpy188I TCNGA 3 cut(s) 42, 273, 310
HpyCH4III ACNGT 3 cut(s) 79, 101, 371
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 7, 29, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 39, 179
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 57, 131, 320
Kzo9I GATC 2 cut(s) 42, 226
Lsp1109I GCAGC 1 cut(s) 136
MabI ACCWGGT 2 cut(s) 70, 301
MaeI CTAG 2 cut(s) 21, 168
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 44, 228
MboI GATC 2 cut(s) 42, 226
MluCI AATT 2 cut(s) 195, 343
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 99, 274
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 3 cut(s) 263, 323, 375
MspCI CTTAAG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 72, 108, 303
MvaI CCWGG 3 cut(s) 72, 108, 303
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 42, 226
NlaIII CATG 3 cut(s) 57, 131, 320
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 100
NspI RCATGY 1 cut(s) 57
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 126
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 70, 106, 301
PspGI CCWGG 3 cut(s) 70, 106, 301
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 3 cut(s) 76, 81, 172
RsaNI GTAC 3 cut(s) 75, 80, 171
SaqAI TTAA 3 cut(s) 263, 323, 375
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 42, 226
Sau96I GGNCC 1 cut(s) 32
SbfI CCTGCAGG 1 cut(s) 31
ScrFI CCNGG 3 cut(s) 72, 108, 303
SdaI CCTGCAGG 1 cut(s) 31
SetI ASST 8 cut(s) 16, 40, 73, 91, 304, 316, 330, 403
SexAI ACCWGGT 2 cut(s) 70, 301
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse8387I CCTGCAGG 1 cut(s) 31
Sse9I AATT 2 cut(s) 195, 343
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 2 cut(s) 21, 168
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 3 cut(s) 70, 106, 301
TaaI ACNGT 3 cut(s) 79, 101, 371
TaiI ACGT 1 cut(s) 330
TasI AATT 2 cut(s) 195, 343
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 3 cut(s) 263, 323, 375
Tru9I TTAA 3 cut(s) 263, 323, 375
TscAI CASTG 1 cut(s) 345
TseI GCWGC 1 cut(s) 124
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 32
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 2 cut(s) 21, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.