Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Reverse (-)

28745440 .. 28750426

Gene Structure 4987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGGGAATCATTATCAGTAAGGCGGTATTTGTGTCTCAGGTTGCAGCAGCCATTGCAGTGTTGCATGAACGGTTCATGCTTGAAGAAAAATTTAATGGAGAACAAGTTTCACAAACCCTTACTAGACATCAACGAGTACTTGAGCATGATTATGTCTCACAAAGAGCTGATGGGGAGCGGAAAAACCGAAGTCAGTATAGACCTATTATCGACCATGATGGGCTGCCTTGGCAAAAATCAAATAACCAGGAAACTAACAAGACTAAGACAAAAGAAGAGTTATTAGCAGAAGAAAGGGACTACAAACGACGAAGGATGTCATATCGTGGCAAAAAGGTGAAGCGTACAACTTTGCAGGTTACCAGGGATATTATAGAGGAATACATGGAGGAAATTAAGCAAGCTGGAGGGATTGGATGCTTCGAACTAGCAATTGAAGGGCAAGGTCCATTCAAACTACCTACTGCTACTGACTTCACCACCGATGATGATAATCCAACAAAAAGAAATACCGAGTCAGAGGGAGGTAGCCCAAGTCGTTCTAGGAAACAATCACATTCACGTTATACTATCCATTCCACAACTTCCAGGCATGCTTCTGCCAAAGATCAAGAGGAACCAAGACATAGTCTCCTCCACTGCAAGTATCTAGAAGATTCTAGAAGTCTCAGTGATAGTCGTGATACCGAAAATTACTCCAGAAGCTCAGAAAGGTCTCGAAGTCATGGATGGTCTCATGGGCAGAGTGAACAAGATCATCGACAGCGGACTGATACCAGGCATCATAAAAGAAATCGCTCATCCAAGTATCATGATAGTAGATCCAAGTATCATGATAGCAGATCATCTTCTCTGTCCAACTCGCACCAGAAGTCAAATGTTAAAAGATTTGAGAAAACATATGAGAGTCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

307

Amino Acids

35.71

Weight (kDa)

9.56

Isoelectric Point (pI)

74.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	3 cut(s)	26, 181, 769
AclWI	GGATC	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	2 cut(s)	141, 349
AgsI	TTSAA	3 cut(s)	86, 440, 457
AjnI	CCWGG	4 cut(s)	249, 365, 590, 779
AluBI	AGCT	3 cut(s)	170, 407, 708
AluI	AGCT	3 cut(s)	170, 407, 708
Alw26I	GTCTC	6 cut(s)	42, 163, 638, 674, 723, 741
AlwI	GGATC	1 cut(s)	819
ApeKI	GCWGC	3 cut(s)	47, 50, 226
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	352, 472
AsuII	TTCGAA	1 cut(s)	426
AvaII	GGWCC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	59, 62, 213
BccI	CCATC	3 cut(s)	167, 215, 726
BciT130I	CCWGG	4 cut(s)	251, 367, 592, 781
BcoDI	GTCTC	6 cut(s)	42, 163, 638, 674, 723, 741
BfaI	CTAG	5 cut(s)	126, 431, 546, 653, 663
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	48, 51, 227
BlsI	GCNGC	3 cut(s)	49, 52, 228
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	4 cut(s)	251, 367, 592, 781
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	4 cut(s)	251, 367, 592, 781
BmsI	GCATC	2 cut(s)	410, 793
BpmI	CTGGAG	2 cut(s)	429, 685
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	2 cut(s)	723, 741
BsaJI	CCNNGG	2 cut(s)	230, 366
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 618, 648
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	4 cut(s)	251, 367, 592, 781
BseDI	CCNNGG	2 cut(s)	230, 366
BseGI	GGATG	4 cut(s)	324, 425, 737, 803
BseJI	GATNNNNATC	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	53, 685, 723
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	59, 62, 213
BslFI	GGGAC	1 cut(s)	314
BsmAI	GTCTC	6 cut(s)	42, 163, 638, 674, 723, 741
BsmFI	GGGAC	1 cut(s)	314
Bso31I	GGTCTC	2 cut(s)	723, 741
Bsp119I	TTCGAA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	610, 757, 824, 845
BspACI	CCGC	3 cut(s)	26, 181, 769
BspCNI	CTCAG	3 cut(s)	52, 684, 722
BspHI	TCATGA	2 cut(s)	814, 835
BspLI	GGNNCC	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	819
BspT104I	TTCGAA	1 cut(s)	426
BspTNI	GGTCTC	2 cut(s)	723, 741
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	230, 366
BssMI	GATC	4 cut(s)	610, 757, 824, 845
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	4 cut(s)	251, 367, 592, 781
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	405, 597
BstDEI	CTNAG	4 cut(s)	39, 267, 671, 709
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	4 cut(s)	324, 425, 737, 803
BstKTI	GATC	4 cut(s)	613, 760, 827, 848
BstMAI	GTCTC	6 cut(s)	42, 163, 638, 674, 723, 741
BstMBI	GATC	4 cut(s)	610, 757, 824, 845
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 232
BstNI	CCWGG	4 cut(s)	251, 367, 592, 781
BstNSI	RCATGY	1 cut(s)	599
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	4 cut(s)	249, 365, 590, 779
BstV1I	GCAGC	3 cut(s)	59, 62, 213
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BtsCI	GGATG	4 cut(s)	324, 425, 737, 803
BtsI	GCAGTG	2 cut(s)	66, 640
BtsIMutI	CAGTG	3 cut(s)	66, 640, 679
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	405, 597
CciI	TCATGA	2 cut(s)	814, 835
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	140, 348
CviJI	RGCY	6 cut(s)	53, 170, 226, 407, 534, 708
CviKI_1	RGCY	6 cut(s)	53, 170, 226, 407, 534, 708
CviQI	GTAC	2 cut(s)	140, 348
DdeI	CTNAG	4 cut(s)	39, 267, 671, 709
DpnI	GATC	4 cut(s)	612, 759, 826, 847
DpnII	GATC	4 cut(s)	610, 757, 824, 845
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	2 cut(s)	723, 741
Eco47I	GGWCC	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	4 cut(s)	249, 365, 590, 779
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaqI	GGGAC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	48, 51, 227
FokI	GGATG	4 cut(s)	331, 432, 744, 790
Fsp4HI	GCNGC	3 cut(s)	48, 51, 227
FspBI	CTAG	5 cut(s)	126, 431, 546, 653, 663
GluI	GCNGC	3 cut(s)	48, 51, 227
GsuI	CTGGAG	2 cut(s)	429, 685
HinfI	GANTC	4 cut(s)	9, 518, 659, 910
HphI	GGTGA	2 cut(s)	352, 472
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	2 cut(s)	523, 712
Hpy188III	TCNNGA	8 cut(s)	614, 653, 663, 683, 702, 720, 815, 836
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	309, 434
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	47, 59, 67, 358, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 232
HpyF3I	CTNAG	4 cut(s)	39, 267, 671, 709
HpySE526I	ACGT	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	610, 757, 824, 845
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	59, 62, 213
LweI	GCATC	2 cut(s)	410, 793
MaeI	CTAG	5 cut(s)	126, 431, 546, 653, 663
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	612, 759, 826, 847
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	4 cut(s)	610, 757, 824, 845
MboII	GAAGA	5 cut(s)	98, 290, 305, 668, 843
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	824
MluCI	AATT	4 cut(s)	92, 396, 435, 694
MlyI	GAGTC	2 cut(s)	527, 919
MmeI	TCCRAC	2 cut(s)	524, 885
MnlI	CCTC	7 cut(s)	373, 385, 404, 517, 521, 610, 647
MseI	TTAA	3 cut(s)	96, 399, 885
MslI	CAYNNNNRTG	2 cut(s)	59, 153
MspA1I	CMGCKG	1 cut(s)	769
MspR9I	CCNGG	4 cut(s)	251, 367, 592, 781
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	4 cut(s)	251, 367, 592, 781
MwoI	GCNNNNNNNGC	2 cut(s)	56, 232
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	4 cut(s)	610, 757, 824, 845
NlaIV	GGNNCC	1 cut(s)	621
NspI	RCATGY	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	599
PagI	TCATGA	2 cut(s)	814, 835
PfeI	GAWTC	2 cut(s)	9, 659
PflFI	GACNNNGTC	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	49, 52, 228
PleI	GAGTC	2 cut(s)	526, 918
PpsI	GAGTC	2 cut(s)	526, 918
Psp6I	CCWGG	4 cut(s)	249, 365, 590, 779
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	4 cut(s)	249, 365, 590, 779
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	824
PsyI	GACNNNGTC	1 cut(s)	630
RsaI	GTAC	2 cut(s)	141, 349
RsaNI	GTAC	2 cut(s)	140, 348
RseI	CAYNNNNRTG	2 cut(s)	59, 153
SaqAI	TTAA	3 cut(s)	96, 399, 885
SatI	GCNGC	3 cut(s)	48, 51, 227
Sau3AI	GATC	4 cut(s)	610, 757, 824, 845
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	2 cut(s)	527, 919
ScrFI	CCNGG	4 cut(s)	251, 367, 592, 781
SfaNI	GCATC	2 cut(s)	410, 793
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	59, 153
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	4 cut(s)	92, 396, 435, 694
SsiI	CCGC	3 cut(s)	26, 181, 769
SspMI	CTAG	5 cut(s)	126, 431, 546, 653, 663
StyD4I	CCNGG	4 cut(s)	249, 365, 590, 779
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	4 cut(s)	213, 426, 721, 763
TasI	AATT	4 cut(s)	92, 396, 435, 694
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	9, 659
Tru1I	TTAA	3 cut(s)	96, 399, 885
Tru9I	TTAA	3 cut(s)	96, 399, 885
TscAI	CASTG	3 cut(s)	66, 647, 679
TseI	GCWGC	3 cut(s)	47, 50, 226
TspDTI	ATGAA	3 cut(s)	17, 67, 84
TspRI	CASTG	3 cut(s)	66, 647, 679
Tth111I	GACNNNGTC	1 cut(s)	630
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	2 cut(s)	652, 662
XceI	RCATGY	1 cut(s)	599
XspI	CTAG	5 cut(s)	126, 431, 546, 653, 663
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.