Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Forward (+)

23888354 .. 23890048

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAGCTTACAACGTCGGAAATGGCTTATGCCCGTCTTCAATCGAATTATGCATAAGCCGGAACGCATCATCAATCCTCCCCACCTTCGTTAATTTTTCTGCTTTTGATGGTATCAACAGAATGTTCACAGTTCCTTCAGCTGACAAAGAGTGGTGTAGAATTCTTCCATCGGAGTTGTGGGCTATTAAAACTGAAGTTGAGGGCTGGAATGAGTTTCCTTGTATGTACTCGTACTGTGTTCTTGGTGCCATCTTGGGGTTGGGTGTGGTTAGAGAATGGGACTTAGCCATATGGGTGTCTGCAAATTCACCACAATGTGGAGTTGTGATTGATGTCGCTATGAGGGATCATAAGGAGATCCAAAGAGAGAATTTTGAGTGTCCCACTCTGGTTCAAGCTTTTACGTGGCTGGCCTCTCAGCTTTCCATACTGTATGGTGCACAAAATGGGAAAGTATTTGCCATAAGCTTTCTCAAGAAATGCATATCAGATGCTGTAATGGCCTCGTTAATTTTCCCATTGGAGCAACAGGTGACACGGTCTCCTGCTTTAGAAGGGGCTTCATCGAATTTGGACGCCAATGGCAACGGTGTTAGGAATACTGAAGCTTTGAAACCACTAAGCACAGATGGTGAAGGGGATAGCATGATGAAGGAAAACATTATCAGTAGGGTGGTATTTGTGTCCCAGGTTGCAGCAGCGGTAGCGGCGTTGCATGAAGGGTCCTTGTTAGAAGAAAAACTTACAGCACAATGGGTTTCAAAAACCCTTACTAGATATCAACAGCATACTCGCAATCGCAGGGAACGAGATGATCTGGAGGTGACAAAGACCAAGCATCATGAAACCAAAATGTCATCTTCTAGCATATCCAAGTATAAAGATAATAGATCATCTTCTCGGTTAAATTCACATCAGAAATCAAAGGTTAGAAGGGATAGGTACACATATGAGAATCACAGTTCAAACTCTATGGAACAAAATACGTTTGATGACAGATATGATCCTTTGGAGCCTCGTGACGTATATGAAGACAATCTCTCTACTAACAGAAGGTATGCTAGAGCAAGCAGACATTCTGAAAAAGAGAAAATTCCCAATGACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

371

Amino Acids

41.85

Weight (kDa)

6.48

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	320
AciI	CCGC	2 cut(s)	704, 710
AclWI	GGATC	3 cut(s)	355, 357, 1001
AcsI	RAATTY	6 cut(s)	162, 307, 373, 571, 910, 1095
AcuI	CTGAAG	3 cut(s)	123, 216, 627
AcyI	GRCGYC	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	230, 236, 947
AfiI	CCNNNNNNNGG	2 cut(s)	258, 320
AgsI	TTSAA	5 cut(s)	42, 398, 616, 765, 969
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	6 cut(s)	8, 143, 401, 424, 471, 611
AluI	AGCT	6 cut(s)	8, 143, 401, 424, 471, 611
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	549
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	3 cut(s)	355, 357, 1001
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	414, 504
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	698, 701
ApoI	RAATTY	6 cut(s)	162, 307, 373, 571, 910, 1095
AspS9I	GGNCC	1 cut(s)	726
AsuHPI	GGTGA	4 cut(s)	303, 547, 647, 838
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	1020
BbsI	GAAGAC	2 cut(s)	30, 1041
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	710, 713
BccI	CCATC	4 cut(s)	104, 178, 260, 626
BciT130I	CCWGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	3 cut(s)	777, 867, 1065
BisI	GCNGC	3 cut(s)	699, 702, 711
BlsI	GCNGC	3 cut(s)	700, 703, 712
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	3 cut(s)	250, 727, 1017
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	3 cut(s)	77, 484, 850
BpiI	GAAGAC	2 cut(s)	30, 1041
BpmI	CTGGAG	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	690
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 320
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	690
BseLI	CCNNNNNNNGG	2 cut(s)	258, 320
BseMII	CTCAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	710, 713
BshFI	GGCC	2 cut(s)	416, 506
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	3 cut(s)	296, 369, 673
BslI	CCNNNNNNNGG	2 cut(s)	258, 320
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	3 cut(s)	296, 369, 673
BsnI	GGCC	2 cut(s)	416, 506
Bso31I	GGTCTC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	349, 360, 817, 893, 1006
BspACI	CCGC	2 cut(s)	704, 710
BspANI	GGCC	2 cut(s)	416, 506
BspCNI	CTCAG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	250, 727, 1017
BspPI	GGATC	3 cut(s)	355, 357, 1001
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	5 cut(s)	349, 360, 817, 893, 1006
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	1020
Bst2BI	CACGAG	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	7 cut(s)	133, 239, 435, 543, 593, 965, 1109
BstACI	GRCGYC	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	414, 1072
BstDEI	CTNAG	3 cut(s)	286, 420, 623
BstKTI	GATC	5 cut(s)	352, 363, 820, 896, 1009
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	5 cut(s)	349, 360, 817, 893, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 707, 710
BstNI	CCWGG	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	710, 713
BstV2I	GAAGAC	2 cut(s)	30, 1041
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	416, 506
Cac8I	GCNNGC	2 cut(s)	414, 1072
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	726
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	229, 235, 946
CviAII	CATG	3 cut(s)	649, 719, 845
CviQI	GTAC	3 cut(s)	229, 235, 946
DdeI	CTNAG	3 cut(s)	286, 420, 623
DpnI	GATC	5 cut(s)	351, 362, 819, 895, 1008
DpnII	GATC	5 cut(s)	349, 360, 817, 893, 1006
DraIII	CACNNNGTG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	726
Eco57I	CTGAAG	3 cut(s)	123, 216, 627
EcoO109I	RGGNCCY	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	782
EcoT22I	ATGCAT	2 cut(s)	56, 488
FaeI	CATG	3 cut(s)	652, 722, 848
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	3 cut(s)	296, 369, 673
FatI	CATG	3 cut(s)	648, 718, 844
FauNDI	CATATG	2 cut(s)	293, 952
Fnu4HI	GCNGC	3 cut(s)	699, 702, 711
Fsp4HI	GCNGC	3 cut(s)	699, 702, 711
FspBI	CTAG	3 cut(s)	777, 867, 1065
GluI	GCNGC	3 cut(s)	699, 702, 711
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	2 cut(s)	416, 506
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	652, 722, 848
HindIII	AAGCTT	4 cut(s)	6, 399, 469, 609
HinfI	GANTC	1 cut(s)	958
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	4 cut(s)	303, 547, 647, 838
Hpy166II	GTNNAC	3 cut(s)	129, 443, 948
Hpy188I	TCNGA	5 cut(s)	20, 175, 493, 921, 1084
Hpy188III	TCNNGA	4 cut(s)	478, 821, 845, 1022
Hpy8I	GTNNAC	3 cut(s)	129, 443, 948
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	8 cut(s)	97, 147, 551, 632, 649, 716, 930, 1050
HpyCH4III	ACNGT	7 cut(s)	133, 239, 435, 543, 593, 965, 1109
HpyCH4IV	ACGT	4 cut(s)	15, 407, 989, 1026
HpyCH4V	TGCA	6 cut(s)	54, 305, 443, 486, 698, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 707, 710
HpyF3I	CTNAG	3 cut(s)	286, 420, 623
HpySE526I	ACGT	4 cut(s)	15, 407, 989, 1026
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	652, 722, 848
Kzo9I	GATC	5 cut(s)	349, 360, 817, 893, 1006
LmnI	GCTCC	2 cut(s)	526, 1015
Lsp1109I	GCAGC	2 cut(s)	710, 713
LweI	GCATC	3 cut(s)	77, 484, 850
MaeI	CTAG	3 cut(s)	777, 867, 1065
MaeII	ACGT	4 cut(s)	15, 407, 989, 1026
MaeIII	GTNAC	3 cut(s)	535, 826, 1022
MalI	GATC	5 cut(s)	351, 362, 819, 895, 1008
MboI	GATC	5 cut(s)	349, 360, 817, 893, 1006
MboII	GAAGA	6 cut(s)	30, 158, 749, 855, 891, 1046
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	9 cut(s)	47, 94, 162, 307, 373, 513, 571, 910, 1095
MnlI	CCTC	7 cut(s)	89, 196, 339, 427, 517, 817, 1029
Mph1103I	ATGCAT	2 cut(s)	56, 488
MseI	TTAA	4 cut(s)	93, 189, 512, 908
MslI	CAYNNNNRTG	2 cut(s)	296, 316
MspA1I	CMGCKG	2 cut(s)	143, 704
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	3 cut(s)	503, 707, 710
NdeI	CATATG	2 cut(s)	293, 952
NdeII	GATC	5 cut(s)	349, 360, 817, 893, 1006
NlaIII	CATG	3 cut(s)	652, 722, 848
NlaIV	GGNNCC	3 cut(s)	250, 727, 1017
NmuCI	GTSAC	3 cut(s)	535, 826, 1022
NsiI	ATGCAT	2 cut(s)	56, 488
PagI	TCATGA	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	958
PflFI	GACNNNGTC	1 cut(s)	541
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	700, 703, 712
Ppu21I	YACGTR	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	3 cut(s)	250, 727, 1017
PspPI	GGNCC	1 cut(s)	726
PspPPI	RGGWCCY	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	360
PsyI	GACNNNGTC	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	230, 236, 947
RsaNI	GTAC	3 cut(s)	229, 235, 946
RseI	CAYNNNNRTG	2 cut(s)	296, 316
SaqAI	TTAA	4 cut(s)	93, 189, 512, 908
SatI	GCNGC	3 cut(s)	699, 702, 711
Sau3AI	GATC	5 cut(s)	349, 360, 817, 893, 1006
Sau96I	GGNCC	1 cut(s)	726
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	77, 484, 850
SinI	GGWCC	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	296, 316
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	9 cut(s)	47, 94, 162, 307, 373, 513, 571, 910, 1095
SsiI	CCGC	2 cut(s)	704, 710
SspMI	CTAG	3 cut(s)	777, 867, 1065
StyD4I	CCNGG	1 cut(s)	690
TaaI	ACNGT	7 cut(s)	133, 239, 435, 543, 593, 965, 1109
TaiI	ACGT	4 cut(s)	18, 410, 992, 1029
TaqI	TCGA	2 cut(s)	45, 569
TasI	AATT	9 cut(s)	47, 94, 162, 307, 373, 513, 571, 910, 1095
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	1 cut(s)	958
Tru1I	TTAA	4 cut(s)	93, 189, 512, 908
Tru9I	TTAA	4 cut(s)	93, 189, 512, 908
TseFI	GTSAC	3 cut(s)	535, 826, 1022
TseI	GCWGC	2 cut(s)	698, 701
Tsp45I	GTSAC	3 cut(s)	535, 826, 1022
TspDTI	ATGAA	5 cut(s)	555, 668, 735, 861, 1047
Tth111I	GACNNNGTC	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	726
XapI	RAATTY	6 cut(s)	162, 307, 373, 571, 910, 1095
XcmI	CCANNNNNNNNNTGG	2 cut(s)	177, 259
XspI	CTAG	3 cut(s)	777, 867, 1065
Zsp2I	ATGCAT	2 cut(s)	56, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.