Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Forward (+)

31442829 .. 31448618

Gene Structure 5790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1235500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGAACCGTCCTCCTGCTCAATTTTCCCACCCACCCTTCACTTTCCTTCCTTCAAGTCATAATCCTAACCCCGATTACTTCCACTCTGAGCCACAAAACACACCTCCCGGAATCCTCACTCATCCTCTGCCCCCTGATCTTTTGACCACAATCTCATCTCTCGATAGCCTCATTTGCGAGTCTAACCAGACCCTTGATTCACTCTCCGCTCTCCTCCCTCTCGAAAACTCAAGTTACCATAATTTACATAGTGGCCTTGTCGCCTGCCCTTTCAACCCCCACCACCGTGTGCACCCTGGCTCTCTTTTCTCCCACTCCCTCCACTGCCCTTCCCATCCTCACCCTCTCCAGCATGACACTCTCCCGCCTCGCAACTACACCAAAACCCTCAAATCCTCTGAGCAATCCCACACTGGAAAAAGTTTTCTTCAAACAGTTAATGGCTCAGAGGCTGACCTGTGCTTGTCATTGGAGCAATACTATGCGGATTTCGATTCCAATTTCTTCTACAATGATTGCCCTGGTGTCGTTAAGTTTTCTGCTCTGGATGGTGTCAACAGAATGTTCACACTTCCATTAATTTTGTCAGCTGAGTGTGCAAACTTTATTGGTCCAGGAGAGAGAGAGGTTATGGATTTTGACAACCAGTGGTGTAGAATTCTTCCATCTGAGTTGTGGGCTATTAAATCCGAAGTTGCGGGCTGGAATGAGTTTCCTTTTATGTACTCGTACTGTGTTCTTCGTGTCATTTTGGGGTTGGGTGTGGTTAGAGAATGTGATTTAGCCATATGGGTGATTGCAAATTCACCACAATTTGGAGTTGTGATTGATGTGGCTATGAGGGATCATATACTTGTACTTTTCCAGTTGTGCTTGAAGGCTATTTTAAGGGAAGCTTTAAGTAAGGTAAAGAAAGGAGATCCAAAGAGTAAAAGTTTTGAGTGTCCCACTCTGGTTCAAGCTTTGAGGTGGCTGGCCTCTCAGCTTTCCATACTGTATGGTGTACAAAATGGGAAAGTTTTTGTCATAAGCGTCCTTAAGAAATGCATATCAGATGCTGCAGTGGGCTCGTTAATTTTCCCATTGGAGCAACAGGTGATAGAGTCTCCTGCTTTTGAAGGGGGTTCATTGAATTTGGATGCCAATGGCAATGGTGTGAGGGATGCTGAAGTTATGAAACCACTAAACACAAATGATGAAGGGAATAGCATGGTGAAGGAAAACATTATCGGTAGGGTGGTATTTGTGTCCCAGGTTGCAGCAGCCGTTGCAGCATTGCATGAAAGGTCCTTGCTAGAAGAAAAAATTAAAGCACAACGGGTTTCAAACACCCTTACTAGATATCAACGGGTGGTTGATCATGACTATGTATCACAGAGAGCTCATGAGGAACGGAAACACCGAAGTCAGTATAAACCCATTATTGACCATGATGGGATTCATCAGGAGAAATCACGTGACCAGGAAACAAACAAGACTAAGACTAGAGAAGAGTTATTGGCGGAAGAACGAGACTACAAAAGACGAAGAATGTCATATCGTGGTAAAAAGGTGAAGGGAACACCTTTGCAGAAAATGAGGGATATTATAGAGGTATACATGGAGGAAATGAAGAAAGCTGGTGGGATTGAGTGCTTTGAGAAAGGAACTGAAGGGAAAGGGAACATTCCATTGGAGCTACCATCAGCTCCTGACATCACCATGGATGCTGATAAGGCAACAAAAAGAAGTTATGAGTCAGCGGCAAGTACCCCGTATCATAGCAGTAAACAGTCTCATTCTAGTGATGCTATTCGTTCTGCAACAGCCAGGGATGCTTATACTAAGGATCACGAAAAACCAAAACGTAGTCTTGAGGGACGCCATGAATATCTAGAAGATCAGAGAAGTGTCAGTAGGGACAGGCGCGATACAGAAAATCATTCGAGAAGTCCAGAAAGTCGCCGAGATCATGGATGGTCACACGGACATACTCGCAATCGCAGGGAACGAGATGATCTGGACATGACAAAGATGAAGCATTATGAAACCAAAATGTCATCTTCTGGCATATCCAAGTTTCAAGATAGATCATCTTCTCGGTCAAGTTCTCATCTGAAATCAAAAGTTCGAAGGGATAGATACACATATGAGAATCACAGTTCAAACTCTATGGAACAAAATACGTTTGATGATAGATATGATCCTCTGGAGCCTCATGATATATATGAAGACGATCTCTCTACTAACAGAAAGTATGCTAGAGCAGGCAGACGTTCTGAAAAAGAGAAAATTCCCGACTACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

763

Amino Acids

86.71

Weight (kDa)

7.07

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	1596
AccII	CGCG	1 cut(s)	1908
AciI	CCGC	6 cut(s)	207, 365, 485, 698, 1502, 1742
AclWI	GGATC	4 cut(s)	852, 914, 1836, 2177
AcsI	RAATTY	4 cut(s)	657, 802, 1132, 2271
AcuI	CTGAAG	2 cut(s)	1188, 1671
AcvI	CACGTG	1 cut(s)	1457
AcyI	GRCGYC	1 cut(s)	1861
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	5 cut(s)	725, 731, 858, 1005, 1750
AfiI	CCNNNNNNNGG	1 cut(s)	815
AflII	CTTAAG	1 cut(s)	1037
AjnI	CCWGG	6 cut(s)	295, 520, 613, 1251, 1461, 1808
AjuI	GAANNNNNNNTTGG	2 cut(s)	1655, 1687
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	8 cut(s)	590, 896, 962, 985, 1382, 1619, 1678, 1688
AluI	AGCT	8 cut(s)	590, 896, 962, 985, 1382, 1619, 1678, 1688
Alw21I	GWGCWC	2 cut(s)	294, 1384
Alw26I	GTCTC	3 cut(s)	1110, 1506, 1779
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	852, 914, 1836, 2177
AlwNI	CAGNNNCTG	3 cut(s)	452, 1058, 1691
AoxI	GGCC	2 cut(s)	253, 975
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	1058, 1259, 1262, 1271
ApoI	RAATTY	4 cut(s)	657, 802, 1132, 2271
AseI	ATTAAT	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	1908
AspS9I	GGNCC	2 cut(s)	611, 1287
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	7 cut(s)	332, 798, 805, 1108, 1225, 1564, 1690
AsuII	TTCGAA	1 cut(s)	2110
AvaII	GGWCC	2 cut(s)	611, 1287
BaeGI	GKGCMC	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	1070, 1384
BbrPI	CACGTG	1 cut(s)	1457
BbsI	GAAGAC	1 cut(s)	2217
Bbv12I	GWGCWC	2 cut(s)	294, 1384
BbvI	GCAGC	4 cut(s)	1045, 1271, 1274, 1283
BccI	CCATC	6 cut(s)	342, 542, 673, 1427, 1690, 1950
BceAI	ACGGC	1 cut(s)	1250
BcgI	CGANNNNNNTGC	2 cut(s)	1050, 1084
BciT130I	CCWGG	6 cut(s)	297, 522, 615, 1253, 1463, 1810
BclI	TGATCA	1 cut(s)	1357
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	1110, 1506, 1779
BfaI	CTAG	6 cut(s)	1295, 1338, 1485, 1782, 1874, 2241
BfmI	CTRYAG	1 cut(s)	1059
BfrI	CTTAAG	1 cut(s)	1037
BisI	GCNGC	5 cut(s)	1059, 1260, 1263, 1272, 1743
BlsI	GCNGC	5 cut(s)	1060, 1261, 1264, 1273, 1744
Bme1390I	CCNGG	7 cut(s)	108, 297, 522, 615, 1253, 1463, 1810
Bme18I	GGWCC	2 cut(s)	611, 1287
BmgT120I	GGNCC	2 cut(s)	611, 1287
BmiI	GGNNCC	1 cut(s)	2193
BmrFI	CCNGG	7 cut(s)	108, 297, 522, 615, 1253, 1463, 1810
BmsI	GCATC	6 cut(s)	1045, 1129, 1153, 1696, 1777, 1804
BpiI	GAAGAC	1 cut(s)	2217
BpmI	CTGGAG	2 cut(s)	332, 2210
Bpu14I	TTCGAA	1 cut(s)	2110
BpuEI	CTTGAG	2 cut(s)	214, 1874
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	1457
BsaHI	GRCGYC	1 cut(s)	1861
BsaJI	CCNNGG	5 cut(s)	295, 520, 1251, 1701, 1809
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	3 cut(s)	418, 646, 865
Bse3DI	GCAATG	2 cut(s)	1156, 1274
BseBI	CCWGG	6 cut(s)	297, 522, 615, 1253, 1463, 1810
BseDI	CCNNGG	5 cut(s)	295, 520, 1251, 1701, 1809
BseGI	GGATG	8 cut(s)	121, 334, 553, 1144, 1168, 1711, 1819, 1961
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	2 cut(s)	1156, 1274
BseMII	CTCAG	6 cut(s)	78, 390, 459, 582, 660, 995
BseNI	ACTGG	3 cut(s)	418, 646, 865
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	1045, 1271, 1274, 1283
Bsh1236I	CGCG	1 cut(s)	1908
BshFI	GGCC	2 cut(s)	255, 977
BsiHKAI	GWGCWC	2 cut(s)	294, 1384
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	4 cut(s)	930, 1234, 1872, 1913
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	3 cut(s)	1110, 1506, 1779
BsmFI	GGGAC	4 cut(s)	930, 1234, 1872, 1913
BsnI	GGCC	2 cut(s)	255, 977
Bsp119I	TTCGAA	1 cut(s)	2110
Bsp1286I	GDGCHC	3 cut(s)	294, 1070, 1384
Bsp1407I	TGTACA	1 cut(s)	1003
Bsp19I	CCATGG	1 cut(s)	1701
BspACI	CCGC	6 cut(s)	207, 365, 485, 698, 1502, 1742
BspANI	GGCC	2 cut(s)	255, 977
BspCNI	CTCAG	6 cut(s)	79, 391, 458, 583, 661, 994
BspFNI	CGCG	1 cut(s)	1908
BspHI	TCATGA	3 cut(s)	1360, 1384, 2197
BspLI	GGNNCC	1 cut(s)	2193
BspMAI	CTGCAG	1 cut(s)	1063
BspPI	GGATC	4 cut(s)	852, 914, 1836, 2177
BspT104I	TTCGAA	1 cut(s)	2110
BspTI	CTTAAG	1 cut(s)	1037
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	1156, 1274
BsrGI	TGTACA	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	418, 646, 865
BssECI	CCNNGG	5 cut(s)	295, 520, 1251, 1701, 1809
BssNAI	GTATAC	1 cut(s)	1597
BssNI	GRCGYC	1 cut(s)	1861
BssT1I	CCWWGG	1 cut(s)	1701
Bst1107I	GTATAC	1 cut(s)	1597
Bst2UI	CCWGG	6 cut(s)	297, 522, 615, 1253, 1463, 1810
Bst4CI	ACNGT	7 cut(s)	8, 287, 436, 734, 996, 1773, 2141
Bst6I	CTCTTC	1 cut(s)	1485
BstACI	GRCGYC	1 cut(s)	1861
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	1268
BstAUI	TGTACA	1 cut(s)	1003
BstBAI	YACGTR	1 cut(s)	1457
BstBI	TTCGAA	1 cut(s)	2110
BstC8I	GCNNGC	4 cut(s)	265, 700, 975, 2248
BstDEI	CTNAG	8 cut(s)	87, 399, 445, 591, 669, 981, 1479, 1824
BstDSI	CCRYGG	1 cut(s)	1701
BstF5I	GGATG	8 cut(s)	121, 334, 553, 1144, 1168, 1711, 1819, 1961
BstFNI	CGCG	1 cut(s)	1908
BstHHI	GCGC	1 cut(s)	1908
BstMAI	GTCTC	3 cut(s)	1110, 1506, 1779
BstMWI	GCNNNNNNNGC	6 cut(s)	174, 596, 1268, 1271, 1715, 1814
BstNI	CCWGG	6 cut(s)	297, 522, 615, 1253, 1463, 1810
BstSCI	CCNGG	7 cut(s)	106, 295, 520, 613, 1251, 1461, 1808
BstSFI	CTRYAG	1 cut(s)	1059
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	1908
BstV1I	GCAGC	4 cut(s)	1045, 1271, 1274, 1283
BstV2I	GAAGAC	1 cut(s)	2217
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BstZ17I	GTATAC	1 cut(s)	1597
BsuRI	GGCC	2 cut(s)	255, 977
BtgI	CCRYGG	1 cut(s)	1701
BtsCI	GGATG	8 cut(s)	121, 334, 553, 1144, 1168, 1711, 1819, 1961
BtsI	GCAGTG	2 cut(s)	322, 1068
BtsIMutI	CAGTG	4 cut(s)	322, 411, 653, 1068
Cac8I	GCNNGC	4 cut(s)	265, 700, 975, 2248
CaiI	CAGNNNCTG	3 cut(s)	452, 1058, 1691
CciI	TCATGA	3 cut(s)	1360, 1384, 2197
CfoI	GCGC	1 cut(s)	1908
Cfr13I	GGNCC	2 cut(s)	611, 1287
CseI	GACGC	2 cut(s)	1021, 1869
Csp6I	GTAC	5 cut(s)	724, 730, 857, 1004, 1749
CviQI	GTAC	5 cut(s)	724, 730, 857, 1004, 1749
DdeI	CTNAG	8 cut(s)	87, 399, 445, 591, 669, 981, 1479, 1824
DraIII	CACNNNGTG	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	1485
EarI	CTCTTC	1 cut(s)	1485
EciI	GGCGGA	1 cut(s)	1517
Ecl136II	GAGCTC	1 cut(s)	1382
Eco130I	CCWWGG	1 cut(s)	1701
Eco24I	GRGCYC	2 cut(s)	1070, 1384
Eco32I	GATATC	1 cut(s)	1343
Eco47I	GGWCC	2 cut(s)	611, 1287
Eco53kI	GAGCTC	1 cut(s)	1382
Eco57I	CTGAAG	2 cut(s)	1188, 1671
Eco72I	CACGTG	1 cut(s)	1457
EcoICRI	GAGCTC	1 cut(s)	1382
EcoO109I	RGGNCCY	1 cut(s)	1287
EcoRI	GAATTC	1 cut(s)	657
EcoRII	CCWGG	6 cut(s)	295, 520, 613, 1251, 1461, 1808
EcoRV	GATATC	1 cut(s)	1343
EcoT14I	CCWWGG	1 cut(s)	1701
EcoT22I	ATGCAT	1 cut(s)	1049
EcoT38I	GRGCYC	2 cut(s)	1070, 1384
ErhI	CCWWGG	1 cut(s)	1701
FalI	AAGNNNNNCTT	2 cut(s)	880, 912
FaqI	GGGAC	4 cut(s)	930, 1234, 1872, 1913
FauI	CCCGC	2 cut(s)	372, 691
FauNDI	CATATG	2 cut(s)	788, 2128
FbaI	TGATCA	1 cut(s)	1357
FblI	GTMKAC	1 cut(s)	1596
Fnu4HI	GCNGC	5 cut(s)	1059, 1260, 1263, 1272, 1743
FokI	GGATG	8 cut(s)	108, 321, 560, 1151, 1175, 1718, 1826, 1968
FriOI	GRGCYC	2 cut(s)	1070, 1384
Fsp4HI	GCNGC	5 cut(s)	1059, 1260, 1263, 1272, 1743
FspBI	CTAG	6 cut(s)	1295, 1338, 1485, 1782, 1874, 2241
GlaI	GCGC	1 cut(s)	1907
GluI	GCNGC	5 cut(s)	1059, 1260, 1263, 1272, 1743
GsuI	CTGGAG	2 cut(s)	332, 2210
HaeIII	GGCC	2 cut(s)	255, 977
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	2 cut(s)	1021, 1869
HhaI	GCGC	1 cut(s)	1908
Hin1I	GRCGYC	1 cut(s)	1861
Hin6I	GCGC	1 cut(s)	1906
HinP1I	GCGC	1 cut(s)	1906
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	2 cut(s)	894, 960
HinfI	GANTC	8 cut(s)	111, 179, 197, 494, 1103, 1438, 1736, 2134
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	7 cut(s)	332, 798, 805, 1108, 1225, 1564, 1690
Hpy166II	GTNNAC	6 cut(s)	292, 556, 567, 1004, 1597, 1769
Hpy188I	TCNGA	9 cut(s)	88, 400, 448, 670, 691, 1054, 1884, 2097, 2260
Hpy8I	GTNNAC	6 cut(s)	292, 556, 567, 1004, 1597, 1769
HpyCH4III	ACNGT	7 cut(s)	8, 287, 436, 734, 996, 1773, 2141
HpyCH4IV	ACGT	4 cut(s)	1456, 1846, 2165, 2254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	174, 596, 1268, 1271, 1715, 1814
HpyF3I	CTNAG	8 cut(s)	87, 399, 445, 591, 669, 981, 1479, 1824
HpySE526I	ACGT	4 cut(s)	1456, 1846, 2165, 2254
Hsp92I	GRCGYC	1 cut(s)	1861
HspAI	GCGC	1 cut(s)	1906
Ksp22I	TGATCA	1 cut(s)	1357
LmnI	GCTCC	5 cut(s)	472, 1087, 1675, 1693, 2191
Lsp1109I	GCAGC	4 cut(s)	1045, 1271, 1274, 1283
LweI	GCATC	6 cut(s)	1045, 1129, 1153, 1696, 1777, 1804
MaeI	CTAG	6 cut(s)	1295, 1338, 1485, 1782, 1874, 2241
MaeII	ACGT	4 cut(s)	1456, 1846, 2165, 2254
MaeIII	GTNAC	3 cut(s)	233, 1457, 1959
MbiI	CCGCTC	1 cut(s)	209
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	3 cut(s)	294, 1070, 1384
MlyI	GAGTC	3 cut(s)	188, 1112, 1745
Mph1103I	ATGCAT	1 cut(s)	1049
MseI	TTAA	9 cut(s)	438, 531, 578, 684, 887, 899, 1038, 1073, 1308
MslI	CAYNNNNRTG	5 cut(s)	285, 791, 1365, 1700, 1782
MspA1I	CMGCKG	2 cut(s)	590, 1742
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	7 cut(s)	108, 297, 522, 615, 1253, 1463, 1810
MvaI	CCWGG	6 cut(s)	297, 522, 615, 1253, 1463, 1810
MvnI	CGCG	1 cut(s)	1908
MwoI	GCNNNNNNNGC	6 cut(s)	174, 596, 1268, 1271, 1715, 1814
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	1701
NdeI	CATATG	2 cut(s)	788, 2128
NlaIV	GGNNCC	1 cut(s)	2193
NmeAIII	GCCGAG	1 cut(s)	1970
NmuCI	GTSAC	2 cut(s)	1457, 1959
NsiI	ATGCAT	1 cut(s)	1049
NspV	TTCGAA	1 cut(s)	2110
OliI	CACNNNNGTG	1 cut(s)	285
PagI	TCATGA	3 cut(s)	1360, 1384, 2197
PcsI	WCGNNNNNNNCGW	2 cut(s)	1399, 1987
PfeI	GAWTC	5 cut(s)	111, 197, 494, 1438, 2134
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	2 cut(s)	106, 613
PkrI	GCNGC	5 cut(s)	1060, 1261, 1264, 1273, 1744
PleI	GAGTC	3 cut(s)	187, 1111, 1744
PmaCI	CACGTG	1 cut(s)	1457
PmlI	CACGTG	1 cut(s)	1457
PpsI	GAGTC	3 cut(s)	187, 1111, 1744
Ppu21I	YACGTR	1 cut(s)	1457
PpuMI	RGGWCCY	1 cut(s)	1287
PshBI	ATTAAT	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	1384
Psp5II	RGGWCCY	1 cut(s)	1287
Psp6I	CCWGG	6 cut(s)	295, 520, 613, 1251, 1461, 1808
PspCI	CACGTG	1 cut(s)	1457
PspGI	CCWGG	6 cut(s)	295, 520, 613, 1251, 1461, 1808
PspN4I	GGNNCC	1 cut(s)	2193
PspPI	GGNCC	2 cut(s)	611, 1287
PspPPI	RGGWCCY	1 cut(s)	1287
PstI	CTGCAG	1 cut(s)	1063
PstNI	CAGNNNCTG	3 cut(s)	452, 1058, 1691
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	5 cut(s)	725, 731, 858, 1005, 1750
RsaNI	GTAC	5 cut(s)	724, 730, 857, 1004, 1749
RseI	CAYNNNNRTG	5 cut(s)	285, 791, 1365, 1700, 1782
SacI	GAGCTC	1 cut(s)	1384
SaqAI	TTAA	9 cut(s)	438, 531, 578, 684, 887, 899, 1038, 1073, 1308
SatI	GCNGC	5 cut(s)	1059, 1260, 1263, 1272, 1743
Sau96I	GGNCC	2 cut(s)	611, 1287
SchI	GAGTC	3 cut(s)	188, 1112, 1745
ScrFI	CCNGG	7 cut(s)	108, 297, 522, 615, 1253, 1463, 1810
SduI	GDGCHC	3 cut(s)	294, 1070, 1384
SfaNI	GCATC	6 cut(s)	1045, 1129, 1153, 1696, 1777, 1804
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	2110
SinI	GGWCC	2 cut(s)	611, 1287
SmiMI	CAYNNNNRTG	5 cut(s)	285, 791, 1365, 1700, 1782
SmlI	CTYRAG	3 cut(s)	229, 1037, 1853
SmoI	CTYRAG	3 cut(s)	229, 1037, 1853
SsiI	CCGC	6 cut(s)	207, 365, 485, 698, 1502, 1742
SspMI	CTAG	6 cut(s)	1295, 1338, 1485, 1782, 1874, 2241
SstI	GAGCTC	1 cut(s)	1384
StyD4I	CCNGG	7 cut(s)	106, 295, 520, 613, 1251, 1461, 1808
StyI	CCWWGG	1 cut(s)	1701
TaaI	ACNGT	7 cut(s)	8, 287, 436, 734, 996, 1773, 2141
TaiI	ACGT	4 cut(s)	1459, 1849, 2168, 2257
TaqI	TCGA	5 cut(s)	162, 222, 492, 1925, 2110
TaqII	GACCGA	1 cut(s)	2070
TatI	WGTACW	3 cut(s)	723, 856, 1003
TauI	GCSGC	1 cut(s)	1745
TfiI	GAWTC	5 cut(s)	111, 197, 494, 1438, 2134
Tru1I	TTAA	9 cut(s)	438, 531, 578, 684, 887, 899, 1038, 1073, 1308
Tru9I	TTAA	9 cut(s)	438, 531, 578, 684, 887, 899, 1038, 1073, 1308
TscAI	CASTG	4 cut(s)	329, 418, 653, 1068
TseFI	GTSAC	2 cut(s)	1457, 1959
TseI	GCWGC	4 cut(s)	1058, 1259, 1262, 1271
Tsp45I	GTSAC	2 cut(s)	1457, 1959
TspGWI	ACGGA	2 cut(s)	1408, 1980
TspRI	CASTG	4 cut(s)	329, 418, 653, 1068
Van91I	CCANNNNNTGG	1 cut(s)	815
Vha464I	CTTAAG	1 cut(s)	1037
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	611, 1287
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	4 cut(s)	657, 802, 1132, 2271
XbaI	TCTAGA	1 cut(s)	1873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	1596
XspI	CTAG	6 cut(s)	1295, 1338, 1485, 1782, 1874, 2241
Zsp2I	ATGCAT	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.