Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027913.1

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 992

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027913.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 991 bp

atgaaccgcaccccggctcagttttcccacacaccattcactttccctccctcaattcgtaactctaatcctaaccccaatgtgttccactcccagccgcagaatgcagaacccgaaatcaacactcctcctttgcctcctgacctttctactacaatgtcatctttaagtagcctcattcgtgaatcttcccggacccttgactcactttccactctcctccctgtcccgagccaaaaggattttagggacaatgattgcctcgttccttgccctgttaacccccaccaccgtgtgcacccccactcccttttctcccactccctgcgctgcccccgctctctccaccaccttctcccaccgctccattaccccaaaaccctcaaatcccctgaccagtcacaaactggtaaaagttttattcaaacgcaatacggctccgacgctgctgatatgtgcttgtccttggagcattactacgcagaatttggctgcaattttttctaccgtgattgccctggtgttgttaactcttccgcgctggatggtttcaacaaaacattcacacttccctcagttttgtcagctgagtgtgcaaatttttccggtagcgaagagagggagatgatggattgtgacaagggatgtagtagatttctcccatcagagtcttgggctataaaaagagaagttcagggatggaatgattatccttctttgtactcaaactgtgtgctacgtgccattttggggttaggtgtggttagagagtgtgatttggcgatatgggtaatagaaaattcgcccaagtatgggattgtgattgacgtgcccatgaaagatcatatagttttgctcattaccctgtgcttaagagcaattgtaagggaagctttaagtaaggtaaagtgtagagattcagagagtgggccttttgagtgtcccactttggttgaggcattagtgtggttgggatctcagctttccaaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

330

Amino Acids

36.88

Weight (kDa)

6.17

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	339, 364
AccII	CGCG	1 cut(s)	539
AciI	CCGC	5 cut(s)	7, 98, 337, 362, 537
AclWI	GGATC	1 cut(s)	982
AcsI	RAATTY	3 cut(s)	485, 598, 799
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	4 cut(s)	13, 750, 812, 813
AflII	CTTAAG	1 cut(s)	871
AgsI	TTSAA	2 cut(s)	425, 553
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	1 cut(s)	517
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	587, 893, 982
AluI	AGCT	3 cut(s)	587, 893, 982
Alw21I	GWGCWC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	982
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	929
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	330, 446, 492
ApoI	RAATTY	3 cut(s)	485, 598, 799
AspLEI	GCGC	2 cut(s)	330, 541
AspS9I	GGNCC	2 cut(s)	195, 929
AsuC2I	CCSGG	2 cut(s)	14, 193
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	2 cut(s)	300, 834
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	317, 433, 479
BccI	CCATC	4 cut(s)	539, 622, 670, 693
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	14, 193
BfrI	CTTAAG	1 cut(s)	871
BisI	GCNGC	4 cut(s)	98, 331, 447, 493
BlsI	GCNGC	4 cut(s)	99, 332, 448, 494
Bme1390I	CCNGG	3 cut(s)	14, 193, 519
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	195, 929
BmiI	GGNNCC	2 cut(s)	197, 439
BmrFI	CCNGG	3 cut(s)	14, 193, 519
BpuMI	CCSGG	2 cut(s)	14, 193
BsaAI	YACGTR	1 cut(s)	740
BsaJI	CCNNGG	3 cut(s)	12, 465, 517
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 290, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 750, 812, 813
Bse1I	ACTGG	2 cut(s)	397, 412
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	12, 465, 517
BseGI	GGATG	3 cut(s)	550, 650, 704
BseLI	CCNNNNNNNGG	4 cut(s)	13, 750, 812, 813
BseMII	CTCAG	3 cut(s)	32, 579, 588
BseNI	ACTGG	2 cut(s)	397, 412
BseRI	GAGGAG	2 cut(s)	117, 209
BseSI	GKGCMC	2 cut(s)	300, 834
BseXI	GCAGC	3 cut(s)	317, 433, 479
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	14, 193, 606
BslFI	GGGAC	3 cut(s)	212, 263, 927
BslI	CCNNNNNNNGG	4 cut(s)	13, 750, 812, 813
BsmFI	GGGAC	3 cut(s)	212, 263, 927
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	931
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	300, 834
Bsp143I	GATC	2 cut(s)	841, 974
BspACI	CCGC	5 cut(s)	7, 98, 337, 362, 537
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	4 cut(s)	31, 580, 587, 991
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	2 cut(s)	197, 439
BspPI	GGATC	1 cut(s)	982
BspTI	CTTAAG	1 cut(s)	871
BsrBI	CCGCTC	2 cut(s)	339, 364
BsrI	ACTGG	2 cut(s)	397, 412
BssECI	CCNNGG	3 cut(s)	12, 465, 517
BssMI	GATC	2 cut(s)	841, 974
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	293, 509, 731
Bst6I	CTCTTC	2 cut(s)	538, 609
BstAFI	CTTAAG	1 cut(s)	871
BstBAI	YACGTR	1 cut(s)	740
BstDEI	CTNAG	4 cut(s)	18, 574, 588, 978
BstF5I	GGATG	3 cut(s)	550, 650, 704
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	330, 541
BstKTI	GATC	2 cut(s)	844, 977
BstMBI	GATC	2 cut(s)	841, 974
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 593
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	12, 191, 517
BstSLI	GKGCMC	2 cut(s)	300, 834
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	3 cut(s)	317, 433, 479
BstX2I	RGATCY	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	974
BsuRI	GGCC	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	3 cut(s)	550, 650, 704
CfoI	GCGC	2 cut(s)	330, 541
Cfr13I	GGNCC	2 cut(s)	195, 929
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	721
CspCI	CAANNNNNGTGG	2 cut(s)	934, 969
CviAII	CATG	1 cut(s)	835
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	4 cut(s)	18, 574, 588, 978
DpnI	GATC	2 cut(s)	843, 976
DpnII	GATC	2 cut(s)	841, 974
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	538, 609
EarI	CTCTTC	2 cut(s)	538, 609
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	838
FaiI	YATR	7 cut(s)	455, 680, 787, 813, 836, 846, 848
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	3 cut(s)	212, 263, 927
FatI	CATG	1 cut(s)	834
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	98, 331, 447, 493
FokI	GGATG	3 cut(s)	557, 657, 711
Fsp4HI	GCNGC	4 cut(s)	98, 331, 447, 493
GlaI	GCGC	2 cut(s)	329, 540
GluI	GCNGC	4 cut(s)	98, 331, 447, 493
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	3 cut(s)	14, 193, 606
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	2 cut(s)	330, 541
Hin1II	CATG	1 cut(s)	838
Hin6I	GCGC	2 cut(s)	328, 539
HinP1I	GCGC	2 cut(s)	328, 539
HincII	GTYRAC	2 cut(s)	280, 529
HindII	GTYRAC	2 cut(s)	280, 529
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	4 cut(s)	185, 203, 668, 917
HpaI	GTTAAC	2 cut(s)	280, 529
HpaII	CCGG	3 cut(s)	14, 193, 606
Hpy166II	GTNNAC	3 cut(s)	280, 298, 529
Hpy188I	TCNGA	3 cut(s)	442, 667, 922
Hpy188III	TCNNGA	3 cut(s)	140, 182, 229
Hpy8I	GTNNAC	3 cut(s)	280, 298, 529
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	362, 723
HpyCH4III	ACNGT	3 cut(s)	293, 509, 731
HpyCH4IV	ACGT	2 cut(s)	739, 828
HpyCH4V	TGCA	4 cut(s)	107, 298, 495, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 593
HpyF3I	CTNAG	4 cut(s)	18, 574, 588, 978
HpySE526I	ACGT	2 cut(s)	739, 828
Hsp92II	CATG	1 cut(s)	838
HspAI	GCGC	2 cut(s)	328, 539
KspAI	GTTAAC	2 cut(s)	280, 529
Kzo9I	GATC	2 cut(s)	841, 974
LmnI	GCTCC	3 cut(s)	369, 443, 469
Lsp1109I	GCAGC	3 cut(s)	317, 433, 479
MaeII	ACGT	2 cut(s)	739, 828
MaeIII	GTNAC	3 cut(s)	59, 399, 635
MalI	GATC	2 cut(s)	843, 976
MbiI	CCGCTC	2 cut(s)	339, 364
MboI	GATC	2 cut(s)	841, 974
MboII	GAAGA	3 cut(s)	180, 525, 626
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	1 cut(s)	974
MhlI	GDGCHC	2 cut(s)	300, 834
MluCI	AATT	6 cut(s)	54, 485, 496, 598, 799, 879
MlyI	GAGTC	2 cut(s)	197, 677
MmeI	TCCRAC	1 cut(s)	465
MseI	TTAA	5 cut(s)	167, 279, 528, 872, 896
MslI	CAYNNNNRTG	2 cut(s)	291, 964
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	871
MspI	CCGG	3 cut(s)	14, 193, 606
MspR9I	CCNGG	3 cut(s)	14, 193, 519
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	336, 593
NciI	CCSGG	2 cut(s)	14, 193
NdeII	GATC	2 cut(s)	841, 974
NlaIII	CATG	1 cut(s)	838
NlaIV	GGNNCC	2 cut(s)	197, 439
NmuCI	GTSAC	2 cut(s)	399, 635
OliI	CACNNNNGTG	1 cut(s)	291
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	185, 917
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	99, 332, 448, 494
PleI	GAGTC	2 cut(s)	197, 676
PpsI	GAGTC	2 cut(s)	197, 676
Ppu21I	YACGTR	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	197, 439
PspPI	GGNCC	2 cut(s)	195, 929
PsuI	RGATCY	1 cut(s)	974
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	291, 964
SaqAI	TTAA	5 cut(s)	167, 279, 528, 872, 896
SatI	GCNGC	4 cut(s)	98, 331, 447, 493
Sau3AI	GATC	2 cut(s)	841, 974
Sau96I	GGNCC	2 cut(s)	195, 929
SchI	GAGTC	2 cut(s)	197, 677
ScrFI	CCNGG	3 cut(s)	14, 193, 519
SduI	GDGCHC	2 cut(s)	300, 834
SetI	ASST	9 cut(s)	147, 354, 589, 742, 760, 831, 895, 906, 984
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	291, 964
SmlI	CTYRAG	1 cut(s)	871
SmoI	CTYRAG	1 cut(s)	871
Sse9I	AATT	6 cut(s)	54, 485, 496, 598, 799, 879
SsiI	CCGC	5 cut(s)	7, 98, 337, 362, 537
StyD4I	CCNGG	3 cut(s)	12, 191, 517
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	293, 509, 731
TaiI	ACGT	2 cut(s)	742, 831
TasI	AATT	6 cut(s)	54, 485, 496, 598, 799, 879
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	185, 917
Tru1I	TTAA	5 cut(s)	167, 279, 528, 872, 896
Tru9I	TTAA	5 cut(s)	167, 279, 528, 872, 896
TseFI	GTSAC	2 cut(s)	399, 635
TseI	GCWGC	3 cut(s)	330, 446, 492
Tsp45I	GTSAC	2 cut(s)	399, 635
TspDTI	ATGAA	2 cut(s)	17, 851
Vha464I	CTTAAG	1 cut(s)	871
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	3 cut(s)	485, 598, 799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	404, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.