Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003116.1

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Forward (+)

141924 .. 144374

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003116.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atggtacctgaggtattgctacttggacagtttgatacccgatgtattaaaggggacagtttgctttccaaaccctatggtgaattgaatggaaaattatttgccataaacattctcaagcattgcatactagatgctgccttgggctcattagttttcccattggagcaaaaggtgacagagtctcctactttagaagaaggttcattgaattcggaggttgatggcagttgtgttaaggatgatgaagttacgaaatcactaagcactgatggtgcatatagtatgatgaagggaaacattatcaataaggtggtatttgtgtcccaggttgcagcagccattgcagcattgcatgaacggttcttgctagaagaaaaaattaagggagaacgagtttcacaaaccctcactagacatcaacgagtgcttgagcatgagtatgtctcacaaagagctgatgaggagcggaaaaaccgaagtcagtatagacctattattgaccatgatggtctgcctcggcaacaatcaagtaaccaggaaacaaacaagaccaagacaagagaagagttattggcagaagaaagggactacaaacgacgaagaatgtcatatcgtggcaaaaaagtgaagcgtacaactttgcaggttaccagggatattatagaggaatacatggaggaaatcaagcaagctggagggattggatgctttgagcgagcaactgaagggcaagagagcattccattcaaactacctactgctactgacttcaccactgatgatgacaatccaacaaaaagaaataatgagtcggagggaggtagcccaagtcgtgacagaaaacaatcacattcacgctatgctatccattctacaacttccaggcatgcttccactaaagatcaagagaaaccaaaacagagtcatcaccgagaatatctagaagattcgagaagtcttggtagaaacaggcgtgacacagagtattccagaagcccagaaagctcccgaagtcgtggatggtcacatcggcagagtgaacaagaccatcggcaggggaccaataccaagcatcatgaaagcaattggtcatctaagtatcatgatagtagatcatcttctctgtcaaactcgcaccaaaagtcaaaaattaaaagggatgagaaaacatatgagaatcatcgttcaaacactcagaagataaatacgtttgacgatagatatgattccaatacttttgacgatagatatgatcctttggaatctcatgacagatatgtagaagatgtctcttctagcaaaaagtatggtagagcaggcagatattcagtaaatgagcaaagtccggagtgcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

453

Amino Acids

52.22

Weight (kDa)

8.11

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	1348
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	1250
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	2 cut(s)	6, 637
AfiI	CCNNNNNNNGG	1 cut(s)	1057
AgsI	TTSAA	4 cut(s)	88, 211, 751, 1191
AjnI	CCWGG	4 cut(s)	327, 537, 653, 884
AluBI	AGCT	3 cut(s)	458, 695, 1008
AluI	AGCT	3 cut(s)	458, 695, 1008
Alw26I	GTCTC	3 cut(s)	189, 451, 1297
AlwI	GGATC	1 cut(s)	1250
Aor13HI	TCCGGA	1 cut(s)	1348
ApeKI	GCWGC	4 cut(s)	137, 335, 338, 347
ApoI	RAATTY	1 cut(s)	211
Asp718I	GGTACC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	1062
AsuHPI	GGTGA	4 cut(s)	92, 187, 766, 923
AvaII	GGWCC	1 cut(s)	1062
AxyI	CCTNAGG	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	149
BarI	GAAGNNNNNNTAC	2 cut(s)	1105, 1137
BbvI	GCAGC	4 cut(s)	124, 347, 350, 359
BccI	CCATC	5 cut(s)	218, 266, 503, 1017, 1059
BciT130I	CCWGG	4 cut(s)	329, 539, 655, 886
BcoDI	GTCTC	3 cut(s)	189, 451, 1297
BfaI	CTAG	5 cut(s)	131, 371, 414, 944, 1299
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	4 cut(s)	138, 336, 339, 348
BlsI	GCNGC	4 cut(s)	139, 337, 340, 349
Bme1390I	CCNGG	4 cut(s)	329, 539, 655, 886
Bme18I	GGWCC	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	1062
BmiI	GGNNCC	2 cut(s)	6, 1063
BmrFI	CCNGG	4 cut(s)	329, 539, 655, 886
BmsI	GCATC	3 cut(s)	124, 698, 1084
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	101, 452
BsaBI	GATNNNNATC	1 cut(s)	789
BsaJI	CCNNGG	4 cut(s)	141, 327, 518, 654
BsaWI	WCCGGW	1 cut(s)	1348
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	1057
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	3 cut(s)	121, 342, 350
Bse8I	GATNNNNATC	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	1348
BseBI	CCWGG	4 cut(s)	329, 539, 655, 886
BseDI	CCNNGG	4 cut(s)	141, 327, 518, 654
BseGI	GGATG	4 cut(s)	247, 713, 1028, 1168
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	1 cut(s)	1057
BseMI	GCAATG	3 cut(s)	121, 342, 350
BseMII	CTCAG	1 cut(s)	1211
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	4 cut(s)	124, 347, 350, 359
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	1349
BslFI	GGGAC	4 cut(s)	68, 310, 602, 1075
BslI	CCNNNNNNNGG	1 cut(s)	1057
BsmAI	GTCTC	3 cut(s)	189, 451, 1297
BsmFI	GGGAC	4 cut(s)	68, 310, 602, 1075
BsmI	GAATGC	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	1348
Bsp143I	GATC	3 cut(s)	904, 1115, 1255
BspACI	CCGC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	1210
BspEI	TCCGGA	1 cut(s)	1348
BspHI	TCATGA	3 cut(s)	1078, 1105, 1270
BspLI	GGNNCC	2 cut(s)	6, 1063
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	1250
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	469
BsrDI	GCAATG	3 cut(s)	121, 342, 350
BssECI	CCNNGG	4 cut(s)	141, 327, 518, 654
BssMI	GATC	3 cut(s)	904, 1115, 1255
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	4 cut(s)	329, 539, 655, 886
Bst4CI	ACNGT	3 cut(s)	30, 59, 363
Bst6I	CTCTTC	2 cut(s)	561, 1300
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	693, 720, 891, 1321
BstDEI	CTNAG	4 cut(s)	9, 263, 1098, 1197
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	4 cut(s)	247, 713, 1028, 1168
BstKTI	GATC	3 cut(s)	907, 1118, 1258
BstMAI	GTCTC	3 cut(s)	189, 451, 1297
BstMBI	GATC	3 cut(s)	904, 1115, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 347, 1005
BstNI	CCWGG	4 cut(s)	329, 539, 655, 886
BstNSI	RCATGY	1 cut(s)	893
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	4 cut(s)	327, 537, 653, 884
BstV1I	GCAGC	4 cut(s)	124, 347, 350, 359
Bsu36I	CCTNAGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	247, 713, 1028, 1168
BtsIMutI	CAGTG	2 cut(s)	267, 777
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	693, 720, 891, 1321
CciI	TCATGA	3 cut(s)	1078, 1105, 1270
Cfr13I	GGNCC	1 cut(s)	1062
Csp6I	GTAC	2 cut(s)	5, 636
CviAII	CATG	8 cut(s)	356, 437, 506, 676, 890, 1079, 1106, 1271
CviJI	RGCY	7 cut(s)	147, 341, 458, 695, 828, 999, 1008
CviKI_1	RGCY	7 cut(s)	147, 341, 458, 695, 828, 999, 1008
CviQI	GTAC	2 cut(s)	5, 636
DdeI	CTNAG	4 cut(s)	9, 263, 1098, 1197
DpnI	GATC	3 cut(s)	906, 1117, 1257
DpnII	GATC	3 cut(s)	904, 1115, 1255
Eam1104I	CTCTTC	2 cut(s)	561, 1300
EarI	CTCTTC	2 cut(s)	561, 1300
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	1062
Eco57I	CTGAAG	1 cut(s)	747
Eco81I	CCTNAGG	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	649
EcoO65I	GGTNACC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	4 cut(s)	327, 537, 653, 884
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	8 cut(s)	359, 440, 509, 679, 893, 1082, 1109, 1274
FaqI	GGGAC	4 cut(s)	68, 310, 602, 1075
FatI	CATG	8 cut(s)	355, 436, 505, 675, 889, 1078, 1105, 1270
FauNDI	CATATG	1 cut(s)	1174
Fnu4HI	GCNGC	4 cut(s)	138, 336, 339, 348
FokI	GGATG	4 cut(s)	254, 720, 1035, 1175
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	138, 336, 339, 348
FspBI	CTAG	5 cut(s)	131, 371, 414, 944, 1299
GluI	GCNGC	4 cut(s)	138, 336, 339, 348
GsuI	CTGGAG	1 cut(s)	717
HapII	CCGG	1 cut(s)	1349
Hin1II	CATG	8 cut(s)	359, 440, 509, 679, 893, 1082, 1109, 1274
HinfI	GANTC	7 cut(s)	182, 812, 925, 950, 1180, 1229, 1265
HpaII	CCGG	1 cut(s)	1349
HphI	GGTGA	4 cut(s)	92, 187, 766, 923
Hpy166II	GTNNAC	1 cut(s)	1043
Hpy188I	TCNGA	3 cut(s)	217, 817, 1200
Hpy8I	GTNNAC	1 cut(s)	1043
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	3 cut(s)	194, 286, 722
HpyCH4III	ACNGT	3 cut(s)	30, 59, 363
HpyCH4IV	ACGT	1 cut(s)	1211
HpyCH4V	TGCA	7 cut(s)	126, 278, 335, 347, 355, 646, 1356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 347, 1005
HpyF3I	CTNAG	4 cut(s)	9, 263, 1098, 1197
HpySE526I	ACGT	1 cut(s)	1211
Hsp92II	CATG	8 cut(s)	359, 440, 509, 679, 893, 1082, 1109, 1274
Kpn2I	TCCGGA	1 cut(s)	1348
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	904, 1115, 1255
LmnI	GCTCC	3 cut(s)	166, 466, 1013
Lsp1109I	GCAGC	4 cut(s)	124, 347, 350, 359
LweI	GCATC	3 cut(s)	124, 698, 1084
MaeI	CTAG	5 cut(s)	131, 371, 414, 944, 1299
MaeII	ACGT	1 cut(s)	1211
MaeIII	GTNAC	7 cut(s)	175, 250, 533, 649, 836, 977, 1026
MalI	GATC	3 cut(s)	906, 1117, 1257
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	3 cut(s)	904, 1115, 1255
MfeI	CAATTG	1 cut(s)	1087
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	6 cut(s)	83, 95, 211, 381, 1087, 1152
MlyI	GAGTC	3 cut(s)	191, 821, 934
MmeI	TCCRAC	2 cut(s)	795, 818
MroI	TCCGGA	1 cut(s)	1348
MseI	TTAA	4 cut(s)	48, 237, 384, 1155
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	1 cut(s)	1349
MspR9I	CCNGG	4 cut(s)	329, 539, 655, 886
MunI	CAATTG	1 cut(s)	1087
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	329, 539, 655, 886
MwoI	GCNNNNNNNGC	3 cut(s)	344, 347, 1005
NdeI	CATATG	1 cut(s)	1174
NdeII	GATC	3 cut(s)	904, 1115, 1255
NlaIII	CATG	8 cut(s)	359, 440, 509, 679, 893, 1082, 1109, 1274
NlaIV	GGNNCC	2 cut(s)	6, 1063
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	4 cut(s)	175, 836, 977, 1026
NspI	RCATGY	1 cut(s)	893
PaeI	GCATGC	1 cut(s)	893
PagI	TCATGA	3 cut(s)	1078, 1105, 1270
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	950, 1180, 1229, 1265
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	139, 337, 340, 349
PleI	GAGTC	3 cut(s)	190, 820, 933
PpsI	GAGTC	3 cut(s)	190, 820, 933
Psp6I	CCWGG	4 cut(s)	327, 537, 653, 884
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	4 cut(s)	327, 537, 653, 884
PspN4I	GGNNCC	2 cut(s)	6, 1063
PspPI	GGNCC	1 cut(s)	1062
PsyI	GACNNNGTC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	6, 637
RsaNI	GTAC	2 cut(s)	5, 636
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	48, 237, 384, 1155
SatI	GCNGC	4 cut(s)	138, 336, 339, 348
Sau3AI	GATC	3 cut(s)	904, 1115, 1255
Sau96I	GGNCC	1 cut(s)	1062
SchI	GAGTC	3 cut(s)	191, 821, 934
ScrFI	CCNGG	4 cut(s)	329, 539, 655, 886
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	3 cut(s)	124, 698, 1084
SinI	GGWCC	1 cut(s)	1062
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	116, 431
SmoI	CTYRAG	2 cut(s)	116, 431
SphI	GCATGC	1 cut(s)	893
Sse9I	AATT	6 cut(s)	83, 95, 211, 381, 1087, 1152
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	5 cut(s)	131, 371, 414, 944, 1299
StyD4I	CCNGG	4 cut(s)	327, 537, 653, 884
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	30, 59, 363
TaiI	ACGT	1 cut(s)	1214
TaqI	TCGA	1 cut(s)	953
TasI	AATT	6 cut(s)	83, 95, 211, 381, 1087, 1152
TfiI	GAWTC	4 cut(s)	950, 1180, 1229, 1265
Tru1I	TTAA	4 cut(s)	48, 237, 384, 1155
Tru9I	TTAA	4 cut(s)	48, 237, 384, 1155
TscAI	CASTG	2 cut(s)	274, 784
TseFI	GTSAC	4 cut(s)	175, 836, 977, 1026
TseI	GCWGC	4 cut(s)	137, 335, 338, 347
Tsp45I	GTSAC	4 cut(s)	175, 836, 977, 1026
TspDTI	ATGAA	5 cut(s)	195, 261, 305, 372, 1095
TspRI	CASTG	2 cut(s)	274, 784
Tth111I	GACNNNGTC	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	1062
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	1 cut(s)	893
XspI	CTAG	5 cut(s)	131, 371, 414, 944, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.