Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012030.1

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1795

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012030.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 937 bp

agtgcttgagcatgagtatgtctcacaaagagctgatgaggagcggaaaaaccgaagtcagtatagacctattattgaccatgatggtctgcctcggcaacaatcaagtaaccaggaaacaaacaagaccaagacaagagaagagttattggcagaagaaagggactacaaacgacgaagaatgtcatatcgtggcaaaaaagtgaagcgtacaactttgcaggttaccagggatattatagaggaatacatggaggaaatcaagcaagctggagggattggatgctttgagcgagcaactgaagggcaagagagcattccattcaaactacctactgctactgacttcaccactgatgatgacaatccaacaaaaagaaataatgagtcggagggaggtagcccaagtcgtgacagaaaacaatcacattcacgctatgctatccattctacaacttccaggcatgcttccactaaagatcaagagaaaccaaaacagagtcatcaccgagaatatctagaagattcgagaagtctcagtagaaacaggcgtgacacagagtattccagaagcccagaaagctcccgaagtcgtggatggtcacatgggcagagtgaacaagaccatcggcaggggaccaataccaagcatcatgaaagcaattggtcatctaagtatcatgatagtagatcatcttctctgtcaaactcgcaccaaaagtcaaaaattaaaagggatgagaaaacatatgagaatcatcgttcaaactctcagaagataaatacttttgacgatagatatgattccaatacttttgacgatagatatgatcccttggaatctcatgacagatatgtagaagatgtctcttctagcaaaaagtatggtagagcaggcagatattcagtaaatgagcaaagtccggaatgcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

311

Amino Acids

36.6

Weight (kDa)

8.8

Isoelectric Point (pI)

79.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	923
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	825
AcuI	CTGAAG	1 cut(s)	322
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	2 cut(s)	326, 766
AjnI	CCWGG	3 cut(s)	112, 228, 459
AluBI	AGCT	3 cut(s)	33, 270, 583
AluI	AGCT	3 cut(s)	33, 270, 583
Alw26I	GTCTC	3 cut(s)	26, 540, 872
AlwI	GGATC	1 cut(s)	825
Aor13HI	TCCGGA	1 cut(s)	923
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	341, 498
AvaII	GGWCC	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BccI	CCATC	3 cut(s)	78, 592, 634
BciT130I	CCWGG	3 cut(s)	114, 230, 461
BcoDI	GTCTC	3 cut(s)	26, 540, 872
BfaI	CTAG	2 cut(s)	519, 874
BfuAI	ACCTGC	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	114, 230, 461
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	3 cut(s)	114, 230, 461
BmsI	GCATC	2 cut(s)	273, 659
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	93, 229, 835
BsaWI	WCCGGW	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	923
BseBI	CCWGG	3 cut(s)	114, 230, 461
BseDI	CCNNGG	3 cut(s)	93, 229, 835
BseGI	GGATG	3 cut(s)	288, 603, 743
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	551, 786
BseRI	GAGGAG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	177, 650
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	3 cut(s)	26, 540, 872
BsmFI	GGGAC	2 cut(s)	177, 650
BsmI	GAATGC	2 cut(s)	316, 933
Bsp13I	TCCGGA	1 cut(s)	923
Bsp143I	GATC	3 cut(s)	479, 690, 830
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	550, 785
BspEI	TCCGGA	1 cut(s)	923
BspHI	TCATGA	3 cut(s)	653, 680, 845
BspLI	GGNNCC	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	825
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	93, 229, 835
BssMI	GATC	3 cut(s)	479, 690, 830
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	3 cut(s)	114, 230, 461
Bst6I	CTCTTC	2 cut(s)	136, 875
BstC8I	GCNNGC	4 cut(s)	268, 295, 466, 896
BstDEI	CTNAG	3 cut(s)	537, 673, 772
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	288, 603, 743
BstKTI	GATC	3 cut(s)	482, 693, 833
BstMAI	GTCTC	3 cut(s)	26, 540, 872
BstMBI	GATC	3 cut(s)	479, 690, 830
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	3 cut(s)	114, 230, 461
BstNSI	RCATGY	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	112, 228, 459
BtsCI	GGATG	3 cut(s)	288, 603, 743
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	4 cut(s)	268, 295, 466, 896
CciI	TCATGA	3 cut(s)	653, 680, 845
Cfr13I	GGNCC	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	8 cut(s)	12, 81, 251, 465, 606, 654, 681, 846
CviJI	RGCY	5 cut(s)	33, 270, 403, 574, 583
CviKI_1	RGCY	5 cut(s)	33, 270, 403, 574, 583
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	3 cut(s)	537, 673, 772
DpnI	GATC	3 cut(s)	481, 692, 832
DpnII	GATC	3 cut(s)	479, 690, 830
Eam1104I	CTCTTC	2 cut(s)	136, 875
EarI	CTCTTC	2 cut(s)	136, 875
Eco130I	CCWWGG	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	112, 228, 459
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	8 cut(s)	15, 84, 254, 468, 609, 657, 684, 849
FaqI	GGGAC	2 cut(s)	177, 650
FatI	CATG	8 cut(s)	11, 80, 250, 464, 605, 653, 680, 845
FauNDI	CATATG	1 cut(s)	749
FokI	GGATG	3 cut(s)	295, 610, 750
FspBI	CTAG	2 cut(s)	519, 874
GsuI	CTGGAG	1 cut(s)	292
HapII	CCGG	1 cut(s)	924
Hin1II	CATG	8 cut(s)	15, 84, 254, 468, 609, 657, 684, 849
HinfI	GANTC	6 cut(s)	387, 500, 525, 755, 804, 840
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	341, 498
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	2 cut(s)	392, 775
Hpy8I	GTNNAC	1 cut(s)	618
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	221, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	3 cut(s)	537, 673, 772
Hsp92II	CATG	8 cut(s)	15, 84, 254, 468, 609, 657, 684, 849
Kpn2I	TCCGGA	1 cut(s)	923
Kzo9I	GATC	3 cut(s)	479, 690, 830
LmnI	GCTCC	2 cut(s)	41, 588
LweI	GCATC	2 cut(s)	273, 659
MaeI	CTAG	2 cut(s)	519, 874
MaeIII	GTNAC	5 cut(s)	108, 224, 411, 552, 601
MalI	GATC	3 cut(s)	481, 692, 832
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	3 cut(s)	479, 690, 830
MboII	GAAGA	8 cut(s)	153, 168, 190, 534, 688, 788, 862, 873
MfeI	CAATTG	1 cut(s)	662
MluCI	AATT	2 cut(s)	662, 727
MlyI	GAGTC	2 cut(s)	396, 509
MmeI	TCCRAC	2 cut(s)	370, 393
MnlI	CCTC	7 cut(s)	32, 103, 236, 248, 267, 386, 390
MroI	TCCGGA	1 cut(s)	923
MseI	TTAA	1 cut(s)	730
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	3 cut(s)	114, 230, 461
MunI	CAATTG	1 cut(s)	662
Mva1269I	GAATGC	2 cut(s)	316, 933
MvaI	CCWGG	3 cut(s)	114, 230, 461
MwoI	GCNNNNNNNGC	1 cut(s)	580
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	3 cut(s)	479, 690, 830
NlaIII	CATG	8 cut(s)	15, 84, 254, 468, 609, 657, 684, 849
NlaIV	GGNNCC	1 cut(s)	638
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	3 cut(s)	411, 552, 601
NspI	RCATGY	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	468
PagI	TCATGA	3 cut(s)	653, 680, 845
PctI	GAATGC	2 cut(s)	316, 933
PfeI	GAWTC	4 cut(s)	525, 755, 804, 840
PleI	GAGTC	2 cut(s)	395, 508
PpsI	GAGTC	2 cut(s)	395, 508
Psp6I	CCWGG	3 cut(s)	112, 228, 459
PspEI	GGTNACC	1 cut(s)	224
PspGI	CCWGG	3 cut(s)	112, 228, 459
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	637
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	730
Sau3AI	GATC	3 cut(s)	479, 690, 830
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	396, 509
ScrFI	CCNGG	3 cut(s)	114, 230, 461
SetI	ASST	7 cut(s)	35, 71, 226, 272, 335, 401, 585
SfaNI	GCATC	2 cut(s)	273, 659
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	2 cut(s)	662, 727
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	519, 874
StyD4I	CCNGG	3 cut(s)	112, 228, 459
StyI	CCWWGG	1 cut(s)	835
TaqI	TCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	662, 727
TfiI	GAWTC	4 cut(s)	525, 755, 804, 840
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	3 cut(s)	411, 552, 601
Tsp45I	GTSAC	3 cut(s)	411, 552, 601
TspDTI	ATGAA	1 cut(s)	670
TspRI	CASTG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	637
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	468
XspI	CTAG	2 cut(s)	519, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.