Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Reverse (-)

887625 .. 891573

Gene Structure 3949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGAAAGATCATATAGTTTTGCTCATTACCCTGTGCTTAAGAGCAATTGTAAGGGAAGCTTTAAGTAAGGTAAAGTATAGAGATTCAGAGAGTGGGCCTTTTGAGTGTCCCACTTTGGTTGAGGCATTAGTGTGGTTGGGATCTCAGCTTTCCAAACCCTATGGTGAATTGAATGGAAAATTATTTGCCATAAACAGTCTCAAGCATTGCATACTAGATGCTGCCTTGGGCTCATTAGTTTTCCCATTGGAGCAAAAGGTGACAGAGTCTCCTACTTTAGAAGAAGGTTCATTGAATTCGGAGGTTGATGGCAGTTGTGTTAAGGATGATGAAGTTACGAAATCACTAAGCACTGATGGTGCATATAGTATGATGAAGGGAAACATTATCAATAAGGTGGTATTTGTGTCCCAGGTTGCAGCAGCCATTGCAGCATTGCATGAACGTTTCTTGCTAGAAGAAAAAATTAAGGGAGAACGAGTTTCACAAACCCTCACTAGACATCAACGAGTGCTTGAGCATGAGTATGTCTCACAAAGAGCTGATGAGGAGCGGAAAAACCGAAGTCAGTATAGACCTATTATTGACCATGATGGGCTGCCTCGGCAACAATCAAGTAACCAGGAAACAAACAAGACCAAGACAAGAGAAGAGTTATTGGCAGAAGAAAGGGACTACAAACGACGAAGAATGTCATATCGTGGCAAAAAAGTGAAGCGTACAACTTTGCAGGTTACCAGGGATATTATAGAGGAATACATGGAGGAAATCAAGCAAGCTGGAGGGATTGGATGCTTTGAGCGAGCAACTGAAGGGCAAGGGAGCATTCCATTCAAACTACCTGCTGCTACTGACTTCACCACTGCTGATGACAATCCAACAAAAAGAAATAATGAGTCAGAGGGAGGTAGCCCAAGTCGTGACAGAAAACAATCACATTCACGCTATGCTATCCATTCTACAACTTCCAGGCATGCTTCAACTAAAGATCAAGAGAAACCAAAACAGAGTCATCACCGAGAATATCTAGAAGATTCGAGAAGTCTCAGTAGAAACAGGCGTGACACAGAGTATTCCAGAAGCCCAGAAAGCTCCCGAAGTCGTGGATGGTCACATGGGCAGAGTGAACAAGACCATCGGCAGGGGACCAATACCAAGCATCATGAAAGCAATTGGTCATCTAAGTATCATGATAGTAGATCATCTTCTCTGTCAAACTCGCACCAAAAGTCAAAAATTAAAAGGGATGAGAAAACATATGAGAATCATCGTTCAAACTCTCGGAAGATAAATACTTTTGACGATAGATATGATTCCAATACTTTTGACGATAGATATGATCCCTTGGAATCTCATGACAGATATGTAGAAGATGTCTCTTCTAGCAAAAAGTATGGTAGAGCAGGCAGATATTCAGTAAATGAGCAAAGTCCGGAGTGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

481

Amino Acids

55.19

Weight (kDa)

8.64

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	721, 850
AccBSI	CCGCTC	1 cut(s)	553
AccIII	TCCGGA	1 cut(s)	1432
AciI	CCGC	1 cut(s)	553
AclI	AACGTT	1 cut(s)	445
AclWI	GGATC	2 cut(s)	148, 1334
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	1 cut(s)	1141
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	5 cut(s)	172, 295, 835, 981, 1275
AjnI	CCWGG	4 cut(s)	411, 621, 737, 968
AluBI	AGCT	5 cut(s)	59, 148, 542, 779, 1092
AluI	AGCT	5 cut(s)	59, 148, 542, 779, 1092
Alw26I	GTCTC	5 cut(s)	203, 273, 535, 1049, 1381
AlwI	GGATC	2 cut(s)	148, 1334
Aor13HI	TCCGGA	1 cut(s)	1432
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	6 cut(s)	221, 419, 422, 431, 598, 845
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	95, 1146
AsuHPI	GGTGA	4 cut(s)	176, 271, 850, 1007
AvaII	GGWCC	1 cut(s)	1146
BanII	GRGCYC	1 cut(s)	233
BarI	GAAGNNNNNNTAC	2 cut(s)	1189, 1221
BbvI	GCAGC	6 cut(s)	208, 431, 434, 443, 585, 832
BccI	CCATC	5 cut(s)	302, 350, 587, 1101, 1143
BciT130I	CCWGG	4 cut(s)	413, 623, 739, 970
BcoDI	GTCTC	5 cut(s)	203, 273, 535, 1049, 1381
BfaI	CTAG	5 cut(s)	215, 455, 498, 1028, 1383
BfrI	CTTAAG	1 cut(s)	37
BfuAI	ACCTGC	2 cut(s)	721, 850
BisI	GCNGC	6 cut(s)	222, 420, 423, 432, 599, 846
BlsI	GCNGC	6 cut(s)	223, 421, 424, 433, 600, 847
Bme1390I	CCNGG	4 cut(s)	413, 623, 739, 970
Bme18I	GGWCC	1 cut(s)	1146
BmgT120I	GGNCC	2 cut(s)	95, 1146
BmiI	GGNNCC	1 cut(s)	1147
BmrFI	CCNGG	4 cut(s)	413, 623, 739, 970
BmsI	GCATC	3 cut(s)	208, 782, 1168
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	2 cut(s)	185, 536
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	5 cut(s)	225, 411, 602, 738, 1344
BsaWI	WCCGGW	1 cut(s)	1432
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	1141
Bse3DI	GCAATG	3 cut(s)	205, 426, 434
Bse8I	GATNNNNATC	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	1432
BseBI	CCWGG	4 cut(s)	413, 623, 739, 970
BseDI	CCNNGG	5 cut(s)	225, 411, 602, 738, 1344
BseGI	GGATG	4 cut(s)	331, 797, 1112, 1252
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	1 cut(s)	1141
BseMI	GCAATG	3 cut(s)	205, 426, 434
BseMII	CTCAG	2 cut(s)	158, 1060
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	6 cut(s)	208, 431, 434, 443, 585, 832
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	1433
BslFI	GGGAC	4 cut(s)	93, 394, 686, 1159
BslI	CCNNNNNNNGG	1 cut(s)	1141
BsmAI	GTCTC	5 cut(s)	203, 273, 535, 1049, 1381
BsmFI	GGGAC	4 cut(s)	93, 394, 686, 1159
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	1432
Bsp143I	GATC	5 cut(s)	7, 140, 988, 1199, 1339
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	157, 1059
BspEI	TCCGGA	1 cut(s)	1432
BspHI	TCATGA	3 cut(s)	1162, 1189, 1354
BspLI	GGNNCC	1 cut(s)	1147
BspMI	ACCTGC	2 cut(s)	721, 850
BspPI	GGATC	2 cut(s)	148, 1334
BspTI	CTTAAG	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	553
BsrDI	GCAATG	3 cut(s)	205, 426, 434
BssECI	CCNNGG	5 cut(s)	225, 411, 602, 738, 1344
BssMI	GATC	5 cut(s)	7, 140, 988, 1199, 1339
BssT1I	CCWWGG	2 cut(s)	225, 1344
Bst2UI	CCWGG	4 cut(s)	413, 623, 739, 970
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	645, 1384
BstAFI	CTTAAG	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	777, 804, 975, 1405
BstDEI	CTNAG	4 cut(s)	144, 347, 1046, 1182
BstEII	GGTNACC	1 cut(s)	733
BstF5I	GGATG	4 cut(s)	331, 797, 1112, 1252
BstKTI	GATC	5 cut(s)	10, 143, 991, 1202, 1342
BstMAI	GTCTC	5 cut(s)	203, 273, 535, 1049, 1381
BstMBI	GATC	5 cut(s)	7, 140, 988, 1199, 1339
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 431, 604, 1089
BstNI	CCWGG	4 cut(s)	413, 623, 739, 970
BstNSI	RCATGY	1 cut(s)	977
BstPI	GGTNACC	1 cut(s)	733
BstSCI	CCNGG	4 cut(s)	411, 621, 737, 968
BstV1I	GCAGC	6 cut(s)	208, 431, 434, 443, 585, 832
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	331, 797, 1112, 1252
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	351, 861
BveI	ACCTGC	2 cut(s)	721, 850
Cac8I	GCNNGC	4 cut(s)	777, 804, 975, 1405
CciI	TCATGA	3 cut(s)	1162, 1189, 1354
Cfr13I	GGNCC	2 cut(s)	95, 1146
Csp6I	GTAC	1 cut(s)	720
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	9 cut(s)	440, 521, 590, 760, 974, 1115, 1163, 1190, 1355
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	4 cut(s)	144, 347, 1046, 1182
DpnI	GATC	5 cut(s)	9, 142, 990, 1201, 1341
DpnII	GATC	5 cut(s)	7, 140, 988, 1199, 1339
Eam1104I	CTCTTC	2 cut(s)	645, 1384
EarI	CTCTTC	2 cut(s)	645, 1384
Eco130I	CCWWGG	2 cut(s)	225, 1344
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	1146
Eco57I	CTGAAG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	733
EcoO65I	GGTNACC	1 cut(s)	733
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	4 cut(s)	411, 621, 737, 968
EcoT14I	CCWWGG	2 cut(s)	225, 1344
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	225, 1344
FaeI	CATG	9 cut(s)	443, 524, 593, 763, 977, 1118, 1166, 1193, 1358
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	4 cut(s)	93, 394, 686, 1159
FatI	CATG	9 cut(s)	439, 520, 589, 759, 973, 1114, 1162, 1189, 1354
FauNDI	CATATG	1 cut(s)	1258
Fnu4HI	GCNGC	6 cut(s)	222, 420, 423, 432, 599, 846
FokI	GGATG	4 cut(s)	338, 804, 1119, 1259
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	6 cut(s)	222, 420, 423, 432, 599, 846
FspBI	CTAG	5 cut(s)	215, 455, 498, 1028, 1383
GluI	GCNGC	6 cut(s)	222, 420, 423, 432, 599, 846
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	1433
Hin1II	CATG	9 cut(s)	443, 524, 593, 763, 977, 1118, 1166, 1193, 1358
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	8 cut(s)	83, 266, 896, 1009, 1034, 1264, 1313, 1349
HpaII	CCGG	1 cut(s)	1433
HphI	GGTGA	4 cut(s)	176, 271, 850, 1007
Hpy166II	GTNNAC	1 cut(s)	1127
Hpy188I	TCNGA	4 cut(s)	88, 301, 901, 1284
Hpy8I	GTNNAC	1 cut(s)	1127
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	3 cut(s)	278, 370, 806
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	7 cut(s)	210, 362, 419, 431, 439, 730, 1440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 431, 604, 1089
HpyF3I	CTNAG	4 cut(s)	144, 347, 1046, 1182
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	9 cut(s)	443, 524, 593, 763, 977, 1118, 1166, 1193, 1358
Kpn2I	TCCGGA	1 cut(s)	1432
Kzo9I	GATC	5 cut(s)	7, 140, 988, 1199, 1339
LmnI	GCTCC	4 cut(s)	250, 550, 822, 1097
Lsp1109I	GCAGC	6 cut(s)	208, 431, 434, 443, 585, 832
LweI	GCATC	3 cut(s)	208, 782, 1168
MaeI	CTAG	5 cut(s)	215, 455, 498, 1028, 1383
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	7 cut(s)	259, 334, 617, 733, 920, 1061, 1110
MalI	GATC	5 cut(s)	9, 142, 990, 1201, 1341
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	5 cut(s)	7, 140, 988, 1199, 1339
MfeI	CAATTG	2 cut(s)	45, 1171
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	7 cut(s)	45, 167, 179, 295, 465, 1171, 1236
MlyI	GAGTC	3 cut(s)	275, 905, 1018
MmeI	TCCRAC	1 cut(s)	902
MroI	TCCGGA	1 cut(s)	1432
MseI	TTAA	5 cut(s)	38, 62, 321, 468, 1239
MslI	CAYNNNNRTG	2 cut(s)	130, 525
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	1433
MspR9I	CCNGG	4 cut(s)	413, 623, 739, 970
MunI	CAATTG	2 cut(s)	45, 1171
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	4 cut(s)	413, 623, 739, 970
MwoI	GCNNNNNNNGC	4 cut(s)	428, 431, 604, 1089
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	5 cut(s)	7, 140, 988, 1199, 1339
NlaIII	CATG	9 cut(s)	443, 524, 593, 763, 977, 1118, 1166, 1193, 1358
NlaIV	GGNNCC	1 cut(s)	1147
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	4 cut(s)	259, 920, 1061, 1110
NspI	RCATGY	1 cut(s)	977
PaeI	GCATGC	1 cut(s)	977
PagI	TCATGA	3 cut(s)	1162, 1189, 1354
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	5 cut(s)	83, 1034, 1264, 1313, 1349
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	223, 421, 424, 433, 600, 847
PleI	GAGTC	3 cut(s)	274, 904, 1017
PpsI	GAGTC	3 cut(s)	274, 904, 1017
Psp1406I	AACGTT	1 cut(s)	445
Psp6I	CCWGG	4 cut(s)	411, 621, 737, 968
PspEI	GGTNACC	1 cut(s)	733
PspGI	CCWGG	4 cut(s)	411, 621, 737, 968
PspN4I	GGNNCC	1 cut(s)	1147
PspPI	GGNCC	2 cut(s)	95, 1146
PsuI	RGATCY	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	2 cut(s)	130, 525
SaqAI	TTAA	5 cut(s)	38, 62, 321, 468, 1239
SatI	GCNGC	6 cut(s)	222, 420, 423, 432, 599, 846
Sau3AI	GATC	5 cut(s)	7, 140, 988, 1199, 1339
Sau96I	GGNCC	2 cut(s)	95, 1146
SchI	GAGTC	3 cut(s)	275, 905, 1018
ScrFI	CCNGG	4 cut(s)	413, 623, 739, 970
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	3 cut(s)	208, 782, 1168
SinI	GGWCC	1 cut(s)	1146
SmiMI	CAYNNNNRTG	2 cut(s)	130, 525
SmlI	CTYRAG	3 cut(s)	37, 200, 515
SmoI	CTYRAG	3 cut(s)	37, 200, 515
SphI	GCATGC	1 cut(s)	977
Sse9I	AATT	7 cut(s)	45, 167, 179, 295, 465, 1171, 1236
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	5 cut(s)	215, 455, 498, 1028, 1383
StyD4I	CCNGG	4 cut(s)	411, 621, 737, 968
StyI	CCWWGG	2 cut(s)	225, 1344
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	1037
TasI	AATT	7 cut(s)	45, 167, 179, 295, 465, 1171, 1236
TfiI	GAWTC	5 cut(s)	83, 1034, 1264, 1313, 1349
Tru1I	TTAA	5 cut(s)	38, 62, 321, 468, 1239
Tru9I	TTAA	5 cut(s)	38, 62, 321, 468, 1239
TscAI	CASTG	2 cut(s)	358, 868
TseFI	GTSAC	4 cut(s)	259, 920, 1061, 1110
TseI	GCWGC	6 cut(s)	221, 419, 422, 431, 598, 845
Tsp45I	GTSAC	4 cut(s)	259, 920, 1061, 1110
TspDTI	ATGAA	6 cut(s)	17, 279, 345, 389, 456, 1179
TspRI	CASTG	2 cut(s)	358, 868
Tth111I	GACNNNGTC	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	1146
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	1027
XceI	RCATGY	1 cut(s)	977
XspI	CTAG	5 cut(s)	215, 455, 498, 1028, 1383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.