Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019446.1

Orthogroup ID

OG0004654

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4087

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019446.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1043 bp

acgacgtcgtcggcttgcattccttctcattcttcaacaaaatatgagagagcgcgctggagtttctgcactttcagctctcacagagttggaacgaaacgacgtcgcagccgattctggtgggaattttcgccttttcggataagtccgcagaatgcacaacccgaaatcaacactcctcctttgcctcctgacctttctactacaatctcatctttaagtagcctcattcgtgaatcttcccgaacccttgactcactttccactctcctccctgtcccgagccaaaaggattttagggacaatgattgcctcgttccttgccctgttaacccccaccaccgtgtgcacccccactcccttttctcccactccctgcgctgcccccgctctctccaccaccttctcccaccactccattaccccaaaaccctcaaatcccctgaccagtcacaaactggtaaaagttttattcaaacgcaatacggctccgacgctgctgatatgtgcttgtccttggagcattactacgcagaatttggctgcaattttttctaccgtgattgccctggtgttgttaactcttccgcgctggatggtttcaacaaaacattcacacttccctcagttttgtcagctgagtgtgcaaatttttccggtagcaaagagagtgagatgatggattgtgacaagggatgtagtagatttctcccatcagagtcttgggctataaaaagagaagttcagggatggaatgattatccttttatgtactcaaactgtgtgctacgtgccattttggggttaggtgtggttagagagtgtgatttggcaatatgggtaatagcaaattcgcccaagtatgggattgtgattgacgtgcccatgaaagatcatatagtttttctcattaccctgtgcttaagagcaattgtaagggaagctttaagtaaggtaaagtatagagattcagagagtgggccttttgagtgtcccactttggttgaggcattagtgtggttgggatctcagctttccaaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U11-48K

Protein Analysis

348

Amino Acids

39.23

Weight (kDa)

8.32

Isoelectric Point (pI)

64.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04160 AT3G04160 AT3G04160
fragaria_vesca	FvH4_5g38930 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260 FvH4_6g01260
malus_domestica	MD04G1235500.v1.1
prunus_persica	Prupe.6G355400_v2.0.a1
pyrus_communis	pycom04g20900 pycom12g23230
rosa_chinensis	RchiOBHm_Chr3g0448821 RchiOBHm_Chr3g0448831
rosa_laevigata	RLG00000025872
rosa_multiflora	Rmu_sc0003116.1_g000023 Rmu_sc0012030.1_g000001 Rmu_sc0019446.1_g000001 Rmu_sc0027913.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427040
rosa_rugosa	Rorug02G0616700 Rorug02G0616800 Rorug02G0616800 Rorug02G0616800
rosa_samantha	Rh3AG015000 Rh3BG014800 Rh3CG013700 Rh3DG015300
rosa_wichuraiana	Rw3G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 106
AccBSI	CCGCTC	1 cut(s)	390
AccII	CGCG	2 cut(s)	55, 590
AciI	CCGC	3 cut(s)	149, 388, 588
AclWI	GGATC	1 cut(s)	1033
AcsI	RAATTY	4 cut(s)	125, 536, 649, 850
AcyI	GRCGYC	2 cut(s)	5, 103
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	3 cut(s)	801, 863, 864
AflII	CTTAAG	1 cut(s)	922
AgsI	TTSAA	3 cut(s)	36, 476, 604
AjiI	CACGTC	1 cut(s)	880
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	78, 638, 944, 1033
AluI	AGCT	4 cut(s)	78, 638, 944, 1033
Alw21I	GWGCWC	1 cut(s)	351
Alw44I	GTGCAC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	1033
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	980
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	4 cut(s)	108, 381, 497, 543
ApoI	RAATTY	4 cut(s)	125, 536, 649, 850
AspLEI	GCGC	4 cut(s)	55, 57, 381, 592
AspS9I	GGNCC	1 cut(s)	980
AvaI	CYCGRG	1 cut(s)	280
BaeGI	GKGCMC	2 cut(s)	351, 885
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	120, 368, 484, 530
BccI	CCATC	4 cut(s)	590, 673, 721, 744
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	570
BfrI	CTTAAG	1 cut(s)	922
BisI	GCNGC	4 cut(s)	109, 382, 498, 544
BlsI	GCNGC	4 cut(s)	110, 383, 499, 545
Bme1390I	CCNGG	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	5, 103
BsaJI	CCNNGG	2 cut(s)	516, 568
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	801, 863, 864
Bse1I	ACTGG	2 cut(s)	448, 463
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	516, 568
BseGI	GGATG	3 cut(s)	601, 701, 755
BseLI	CCNNNNNNNGG	3 cut(s)	801, 863, 864
BseMII	CTCAG	3 cut(s)	630, 639, 1043
BseNI	ACTGG	2 cut(s)	448, 463
BsePI	GCGCGC	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	168, 260
BseSI	GKGCMC	2 cut(s)	351, 885
BseXI	GCAGC	4 cut(s)	120, 368, 484, 530
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	2 cut(s)	55, 590
BshFI	GGCC	1 cut(s)	982
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	3 cut(s)	263, 314, 978
BslI	CCNNNNNNNGG	3 cut(s)	801, 863, 864
BsmFI	GGGAC	3 cut(s)	263, 314, 978
BsmI	GAATGC	2 cut(s)	18, 160
BsnI	GGCC	1 cut(s)	982
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	351, 885
Bsp143I	GATC	2 cut(s)	892, 1025
BspACI	CCGC	3 cut(s)	149, 388, 588
BspANI	GGCC	1 cut(s)	982
BspCNI	CTCAG	3 cut(s)	631, 638, 1042
BspFNI	CGCG	2 cut(s)	55, 590
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	1033
BspTI	CTTAAG	1 cut(s)	922
BsrBI	CCGCTC	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	448, 463
BssECI	CCNNGG	2 cut(s)	516, 568
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	2 cut(s)	892, 1025
BssNI	GRCGYC	2 cut(s)	5, 103
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	344, 560, 782
Bst6I	CTCTTC	1 cut(s)	589
BstACI	GRCGYC	2 cut(s)	5, 103
BstAFI	CTTAAG	1 cut(s)	922
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	16, 55
BstDEI	CTNAG	3 cut(s)	625, 639, 1029
BstF5I	GGATG	3 cut(s)	601, 701, 755
BstFNI	CGCG	2 cut(s)	55, 590
BstHHI	GCGC	4 cut(s)	55, 57, 381, 592
BstKTI	GATC	2 cut(s)	895, 1028
BstMBI	GATC	2 cut(s)	892, 1025
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 387, 644
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSLI	GKGCMC	2 cut(s)	351, 885
BstUI	CGCG	2 cut(s)	55, 590
BstV1I	GCAGC	4 cut(s)	120, 368, 484, 530
BstX2I	RGATCY	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1025
BsuRI	GGCC	1 cut(s)	982
BtrI	CACGTC	1 cut(s)	880
BtsCI	GGATG	3 cut(s)	601, 701, 755
Cac8I	GCNNGC	2 cut(s)	16, 55
CfoI	GCGC	4 cut(s)	55, 57, 381, 592
Cfr13I	GGNCC	1 cut(s)	980
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	772
CspCI	CAANNNNNGTGG	2 cut(s)	985, 1020
CviAII	CATG	1 cut(s)	886
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	3 cut(s)	625, 639, 1029
DpnI	GATC	2 cut(s)	894, 1027
DpnII	GATC	2 cut(s)	892, 1025
DraIII	CACNNNGTG	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	1 cut(s)	889
FalI	AAGNNNNNCTT	2 cut(s)	928, 960
FaqI	GGGAC	3 cut(s)	263, 314, 978
FatI	CATG	1 cut(s)	885
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	109, 382, 498, 544
FokI	GGATG	3 cut(s)	608, 708, 762
Fsp4HI	GCNGC	4 cut(s)	109, 382, 498, 544
GlaI	GCGC	4 cut(s)	54, 56, 380, 591
GluI	GCNGC	4 cut(s)	109, 382, 498, 544
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	982
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	4 cut(s)	55, 57, 381, 592
Hin1I	GRCGYC	2 cut(s)	5, 103
Hin1II	CATG	1 cut(s)	889
Hin6I	GCGC	4 cut(s)	53, 55, 379, 590
HinP1I	GCGC	4 cut(s)	53, 55, 379, 590
HincII	GTYRAC	2 cut(s)	331, 580
HindII	GTYRAC	2 cut(s)	331, 580
HindIII	AAGCTT	1 cut(s)	942
HinfI	GANTC	5 cut(s)	114, 236, 254, 719, 968
HpaI	GTTAAC	2 cut(s)	331, 580
HpaII	CCGG	1 cut(s)	657
Hpy166II	GTNNAC	3 cut(s)	331, 349, 580
Hpy188I	TCNGA	4 cut(s)	141, 493, 718, 973
Hpy188III	TCNNGA	4 cut(s)	191, 233, 243, 280
Hpy8I	GTNNAC	3 cut(s)	331, 349, 580
Hpy99I	CGWCG	6 cut(s)	7, 10, 13, 105, 108, 497
HpyAV	CCTTC	2 cut(s)	33, 413
HpyCH4III	ACNGT	3 cut(s)	344, 560, 782
HpyCH4IV	ACGT	4 cut(s)	5, 103, 790, 879
HpyCH4V	TGCA	6 cut(s)	18, 69, 158, 349, 546, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 387, 644
HpyF3I	CTNAG	3 cut(s)	625, 639, 1029
HpySE526I	ACGT	4 cut(s)	5, 103, 790, 879
Hsp92I	GRCGYC	2 cut(s)	5, 103
Hsp92II	CATG	1 cut(s)	889
HspAI	GCGC	4 cut(s)	53, 55, 379, 590
KspAI	GTTAAC	2 cut(s)	331, 580
Kzo9I	GATC	2 cut(s)	892, 1025
LmnI	GCTCC	2 cut(s)	494, 520
Lsp1109I	GCAGC	4 cut(s)	120, 368, 484, 530
MaeII	ACGT	4 cut(s)	5, 103, 790, 879
MaeIII	GTNAC	2 cut(s)	450, 686
MalI	GATC	2 cut(s)	894, 1027
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	2 cut(s)	892, 1025
MboII	GAAGA	3 cut(s)	24, 231, 576
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	2 cut(s)	351, 885
MluCI	AATT	6 cut(s)	125, 536, 547, 649, 850, 930
MlyI	GAGTC	2 cut(s)	248, 728
MmeI	TCCRAC	2 cut(s)	70, 516
MnlI	CCTC	8 cut(s)	189, 198, 236, 281, 323, 443, 634, 1000
MseI	TTAA	5 cut(s)	218, 330, 579, 923, 947
MslI	CAYNNNNRTG	2 cut(s)	342, 1015
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	922
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	2 cut(s)	18, 160
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	55, 590
MwoI	GCNNNNNNNGC	3 cut(s)	75, 387, 644
NdeII	GATC	2 cut(s)	892, 1025
NlaIII	CATG	1 cut(s)	889
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	450, 686
OliI	CACNNNNGTG	1 cut(s)	342
PauI	GCGCGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	18, 160
PfeI	GAWTC	3 cut(s)	114, 236, 968
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	110, 383, 499, 545
PleI	GAGTC	2 cut(s)	248, 727
PpsI	GAGTC	2 cut(s)	248, 727
Ppu21I	YACGTR	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	1025
PsyI	GACNNNGTC	1 cut(s)	7
PteI	GCGCGC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	2 cut(s)	342, 1015
SaqAI	TTAA	5 cut(s)	218, 330, 579, 923, 947
SatI	GCNGC	4 cut(s)	109, 382, 498, 544
Sau3AI	GATC	2 cut(s)	892, 1025
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	248, 728
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	351, 885
SmiMI	CAYNNNNRTG	2 cut(s)	342, 1015
SmlI	CTYRAG	1 cut(s)	922
SmoI	CTYRAG	1 cut(s)	922
Sse9I	AATT	6 cut(s)	125, 536, 547, 649, 850, 930
SsiI	CCGC	3 cut(s)	149, 388, 588
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	3 cut(s)	344, 560, 782
TaiI	ACGT	4 cut(s)	8, 106, 793, 882
TasI	AATT	6 cut(s)	125, 536, 547, 649, 850, 930
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	3 cut(s)	114, 236, 968
Tru1I	TTAA	5 cut(s)	218, 330, 579, 923, 947
Tru9I	TTAA	5 cut(s)	218, 330, 579, 923, 947
TseFI	GTSAC	2 cut(s)	450, 686
TseI	GCWGC	4 cut(s)	108, 381, 497, 543
Tsp45I	GTSAC	2 cut(s)	450, 686
TspDTI	ATGAA	1 cut(s)	902
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	922
VneI	GTGCAC	1 cut(s)	347
XapI	RAATTY	4 cut(s)	125, 536, 649, 850
XcmI	CCANNNNNNNNNTGG	2 cut(s)	455, 720
ZraI	GACGTC	2 cut(s)	6, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.