FvH4_6g01600

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015642
Physical Location & Seq
Reverse (-)
925351 .. 926853
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01600.t1

Sequence Viewer

Length: 879 bp
ATGGATTCAACCTCTGCGGTGTTTCTCTGCTTCGTAGCCCTATTTCTCTCGTCTGTGATATCAATCTCCGATCACAGTTCATTAGTCTACAAAAACTGCGCAAACCAAACATTCACCACCACAGCTCCGACTAATCCTCACACACAAACCCTAACATCTCTTTTCCAAGAACTCACCGCCCACTCAAACCGGTCCAAGTTCTTCAAACACACCGAATCATCAACAGACGACGATAAGATCTCCGGCGTCTACCAATGCCGCGAAGACATCACTAACCAAGAGTGCCACAGCTGCGTGAGCACGATTCCGGTTATGTCCAACACCGTGTGTAGAGAATCCGTGGCTGCTAGGGTTCAGCTCCGCGGGTGCTACATGCACTACAAGCTCGAGGGAATTGATCATCTGGACTACTCCAGCAAGGAGAGGTTGCTGCACAAGAGCTGCGGCCAGGGCGGTGGATCCATCAATGGGGGTTTGGGCGGGTTCGAGGAGATGAGGAGAGCAGCGTTTGGTGTTTTGGAGAGTGGTGTGGTGAGTGGTGAAGGGTTTTGCAAGACGAGGTATGAGTTAGTTGACGTGATGGCTCAGTGTGAAGGAGGGTTGGGGGGTTGTGAATGTGGGGAGTGTGTGAGTGGTGCAGTGCAGATTGCCGAGGAAGAGTGTGGTGGGTCGGTTTCCGGTGAGATTTATTTGGCGGAGTGCTTCTTGAGCTTCGCTTATCATCCGGATGATGAGTCACACCCAGAGGAAGACCGGAGAGACAGGAAAGGTAGTAACGGGAAGACGTTAGCAATTGTTGTGGGAGGGGCAGCAGCTTTGTTTTTTGGGTTCATCTTTTTGTTGTTCCTCAAATCTTGGGGCAAGAAAGATGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

293

Amino Acids

31.79

Weight (kDa)

5.21

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 33 - 128 3.2e-14 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01600
malus_domestica MD00G1149100.v1.1 MD04G1232100.v1.1
prunus_persica Prupe.6G351500_v2.0.a1
pyrus_communis pycom04g20550
rosa_chinensis RchiOBHm_Chr3g0449411
rosa_laevigata RLG00000025833
rosa_multiflora Rmu_sc0019012.1_g000009 Rmu_sc0020017.1_g000002
rosa_roxburghii Rroxscaffold_6G00427370
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018200 Rh3BG018500 Rh3CG017400 Rh3DG018900
rosa_wichuraiana Rw3G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 100
AccI GTMKAC 2 cut(s) 87, 249
AccII CGCG 2 cut(s) 261, 363
AccIII TCCGGA 1 cut(s) 724
AciI CCGC 9 cut(s) 17, 177, 259, 361, 363, 444, 453, 480, 695
AclWI GGATC 2 cut(s) 453, 466
AcoI YGGCCR 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 468
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 9, 205
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 7 cut(s) 125, 291, 358, 385, 441, 711, 815
AluI AGCT 7 cut(s) 125, 291, 358, 385, 441, 711, 815
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 753
AlwI GGATC 2 cut(s) 453, 466
Ama87I CYCGRG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 724
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 7 cut(s) 291, 344, 430, 441, 503, 809, 812
AsiGI ACCGGT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 5 cut(s) 106, 166, 544, 551, 692
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 458
BbsI GAAGAC 3 cut(s) 270, 756, 788
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 7 cut(s) 278, 331, 417, 428, 515, 821, 824
BccI CCATC 2 cut(s) 470, 574
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 753
BfaI CTAG 1 cut(s) 348
BglII AGATCT 1 cut(s) 237
BisI GCNGC 9 cut(s) 259, 292, 345, 431, 442, 445, 504, 810, 813
BlsI GCNGC 9 cut(s) 260, 293, 346, 432, 443, 446, 505, 811, 814
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 449
BpiI GAAGAC 3 cut(s) 270, 756, 788
BpmI CTGGAG 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 727
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 339, 361, 448, 651
BsaWI WCCGGW 5 cut(s) 189, 307, 677, 724, 753
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse118I RCCGGY 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 724
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 4 cut(s) 339, 361, 448, 651
BseGI GGATG 2 cut(s) 721, 733
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 599
BseRI GAGGAG 2 cut(s) 503, 511
BseXI GCAGC 7 cut(s) 278, 331, 417, 428, 515, 821, 824
BsgI GTGCAG 3 cut(s) 416, 657, 662
Bsh1236I CGCG 2 cut(s) 261, 363
BshFI GGCC 1 cut(s) 447
BshTI ACCGGT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 6 cut(s) 190, 243, 308, 678, 725, 754
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 753
BsnI GGCC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 302
Bsp13I TCCGGA 1 cut(s) 724
Bsp143I GATC 4 cut(s) 70, 237, 397, 458
BspACI CCGC 9 cut(s) 17, 177, 259, 361, 363, 444, 453, 480, 695
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 1 cut(s) 598
BspEI TCCGGA 1 cut(s) 724
BspFNI CGCG 2 cut(s) 261, 363
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 2 cut(s) 453, 466
BsrFI RCCGGY 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 339, 361, 448, 651
BssMI GATC 4 cut(s) 70, 237, 397, 458
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 77, 325
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 585
BstDSI CCRYGG 2 cut(s) 339, 361
BstF5I GGATG 2 cut(s) 721, 733
BstFNI CGCG 2 cut(s) 261, 363
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 4 cut(s) 73, 240, 400, 461
BstMAI GTCTC 1 cut(s) 753
BstMBI GATC 4 cut(s) 70, 237, 397, 458
BstMWI GCNNNNNNNGC 5 cut(s) 291, 297, 382, 450, 708
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 447
BstUI CGCG 2 cut(s) 261, 363
BstV1I GCAGC 7 cut(s) 278, 331, 417, 428, 515, 821, 824
BstV2I GAAGAC 3 cut(s) 270, 756, 788
BstX2I RGATCY 2 cut(s) 237, 458
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 2 cut(s) 237, 458
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 2 cut(s) 339, 361
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 721, 733
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 593, 645
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 192
Cfr42I CCGCGG 1 cut(s) 364
CseI GACGC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 189
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 1 cut(s) 373
DdeI CTNAG 1 cut(s) 585
DpnI GATC 4 cut(s) 72, 239, 399, 460
DpnII GATC 4 cut(s) 70, 237, 397, 458
DraIII CACNNNGTG 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
EciI GGCGGA 1 cut(s) 710
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 447
EcoRV GATATC 1 cut(s) 60
FaeI CATG 1 cut(s) 376
FaiI YATR 3 cut(s) 314, 374, 564
FatI CATG 1 cut(s) 372
FauI CCCGC 2 cut(s) 356, 473
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 2 cut(s) 87, 249
Fnu4HI GCNGC 9 cut(s) 259, 292, 345, 431, 442, 445, 504, 810, 813
FokI GGATG 2 cut(s) 708, 740
Fsp4HI GCNGC 9 cut(s) 259, 292, 345, 431, 442, 445, 504, 810, 813
FspBI CTAG 1 cut(s) 348
FspI TGCGCA 1 cut(s) 100
GlaI GCGC 1 cut(s) 100
GluI GCNGC 9 cut(s) 259, 292, 345, 431, 442, 445, 504, 810, 813
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 1 cut(s) 447
HapII CCGG 6 cut(s) 190, 243, 308, 678, 725, 754
HgaI GACGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 5, 215, 304, 335, 734
HpaII CCGG 6 cut(s) 190, 243, 308, 678, 725, 754
HphI GGTGA 5 cut(s) 106, 166, 544, 551, 692
Hpy166II GTNNAC 3 cut(s) 88, 250, 574
Hpy188I TCNGA 2 cut(s) 70, 129
Hpy188III TCNNGA 3 cut(s) 404, 706, 725
Hpy8I GTNNAC 3 cut(s) 88, 250, 574
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 536, 587
HpyCH4III ACNGT 2 cut(s) 77, 325
HpyCH4IV ACGT 2 cut(s) 576, 785
HpyCH4V TGCA 5 cut(s) 376, 433, 552, 638, 643
HpyF10VI GCNNNNNNNGC 5 cut(s) 291, 297, 382, 450, 708
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 576, 785
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 364
Kzo9I GATC 4 cut(s) 70, 237, 397, 458
LmnI GCTCC 2 cut(s) 130, 363
Lsp1109I GCAGC 7 cut(s) 278, 331, 417, 428, 515, 821, 824
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 576, 785
MaeIII GTNAC 2 cut(s) 735, 773
MalI GATC 4 cut(s) 72, 239, 399, 460
MboI GATC 4 cut(s) 70, 237, 397, 458
MboII GAAGA 5 cut(s) 193, 275, 668, 761, 793
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 2 cut(s) 237, 458
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 393, 792
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 2 cut(s) 152, 342
MroI TCCGGA 1 cut(s) 724
MseI TTAA 1 cut(s) 877
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 2 cut(s) 291, 363
MspI CCGG 6 cut(s) 190, 243, 308, 678, 725, 754
MspR9I CCNGG 1 cut(s) 449
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 2 cut(s) 261, 363
MwoI GCNNNNNNNGC 5 cut(s) 291, 297, 382, 450, 708
NdeII GATC 4 cut(s) 70, 237, 397, 458
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 735
NsbI TGCGCA 1 cut(s) 100
NspI RCATGY 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 386
PfeI GAWTC 4 cut(s) 5, 215, 304, 335
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 9 cut(s) 260, 293, 346, 432, 443, 446, 505, 811, 814
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 386
PsuI RGATCY 2 cut(s) 237, 458
PvuII CAGCTG 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 726
SacII CCGCGG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 877
SatI GCNGC 9 cut(s) 259, 292, 345, 431, 442, 445, 504, 810, 813
Sau3AI GATC 4 cut(s) 70, 237, 397, 458
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 1 cut(s) 302
Sfr274I CTCGAG 1 cut(s) 386
Sfr303I CCGCGG 1 cut(s) 364
SgrBI CCGCGG 1 cut(s) 364
SinI GGWCC 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 386, 706
SmoI CTYRAG 2 cut(s) 386, 706
Sse9I AATT 2 cut(s) 393, 792
SsiI CCGC 9 cut(s) 17, 177, 259, 361, 363, 444, 453, 480, 695
SspI AATATT 1 cut(s) 875
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 77, 325
TaiI ACGT 2 cut(s) 579, 788
TaqI TCGA 2 cut(s) 387, 486
TasI AATT 2 cut(s) 393, 792
TauI GCSGC 2 cut(s) 261, 447
TfiI GAWTC 4 cut(s) 5, 215, 304, 335
Tru1I TTAA 1 cut(s) 877
Tru9I TTAA 1 cut(s) 877
TscAI CASTG 2 cut(s) 593, 645
TseFI GTSAC 1 cut(s) 735
TseI GCWGC 7 cut(s) 291, 344, 430, 441, 503, 809, 812
Tsp45I GTSAC 1 cut(s) 735
TspDTI ATGAA 2 cut(s) 69, 820
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 2 cut(s) 593, 645
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 386
XmiI GTMKAC 2 cut(s) 87, 249
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.