Rmu_sc0020017.1_g000002

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020017.1
OG0015642
Physical Location & Seq
Reverse (-)
2290 .. 4719
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020017.1_g000002.1.cds

Sequence Viewer

Length: 948 bp
atgaagagagaatgtgcggcacttggaaatggtttgtggacagaggcttatattgaagccgtggtgttagggaaggttgttacacatcaagcttttagcaccgttcccctgtttctctcgtctgtgatatcaatctccgatcacagttcattagtgtacaaaaactgtgcaaaccaaacattcacaaccacaactcctactagtcctcacacacaaaccctcagatctcttttccaacaactgaccgcccactcaaaccagtccaagttcttcaaacacaccgaatcaacagacgacgatgagatctccggtgtataccaatgccggggagacatcactaaccaagagtgtcacagctgcgtgagcacgcttccggatatctccaacacgatgtgcagagagtccgtggcggctagggttcagctccacgggtgctacatgcactacaagctcgaggggaccgacactgacgactccagcaaggaaagtttgctgcacaagagttgtggcgagggtggtggatccatcaatgggggttcgggcgggttcgaggagatgatgagagcagcgtttggggttttggagaatggtgtggtgagtggtaaagggtttttcaagacgaggtatgagttagtggacgtgatggctcagtgtgaaggagggttggggggttgtaaatgtggggagtgtgtgagtagtggggtgcagattgctgaggaagagtgtggtggttcggtttccggtgagatttatttggcggagtgcttcttgagctttgcttatcatccagatgatgagtcacacccaggcccaggtgaagaacagaaggacaagaaagatagcaacgggaaaacgttagcaattgttgtgggaggggcagcagctttgttttttgggctcatctttttgttgttcctcaaatcttggggaaagaaagatgaatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

315

Amino Acids

33.96

Weight (kDa)

5.14

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01600
malus_domestica MD00G1149100.v1.1 MD04G1232100.v1.1
prunus_persica Prupe.6G351500_v2.0.a1
pyrus_communis pycom04g20550
rosa_chinensis RchiOBHm_Chr3g0449411
rosa_laevigata RLG00000025833
rosa_multiflora Rmu_sc0019012.1_g000009 Rmu_sc0020017.1_g000002
rosa_roxburghii Rroxscaffold_6G00427370
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018200 Rh3BG018500 Rh3CG017400 Rh3DG018900
rosa_wichuraiana Rw3G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 5 cut(s) 17, 246, 410, 543, 758
AclI AACGTT 1 cut(s) 854
AclWI GGATC 2 cut(s) 516, 529
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 325, 531, 812
AgsI TTSAA 3 cut(s) 56, 274, 616
AhlI ACTAGT 1 cut(s) 200
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 2 cut(s) 805, 811
AluBI AGCT 6 cut(s) 92, 357, 424, 451, 774, 884
AluI AGCT 6 cut(s) 92, 357, 424, 451, 774, 884
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 516, 529
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 5 cut(s) 357, 493, 566, 878, 881
AspS9I GGNCC 2 cut(s) 459, 809
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 607, 755, 827
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 459
BamHI GGATCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 5 cut(s) 344, 480, 578, 890, 893
BccI CCATC 2 cut(s) 533, 637
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 807, 813
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 201, 414, 946
BglII AGATCT 2 cut(s) 224, 303
BisI GCNGC 7 cut(s) 18, 358, 411, 494, 567, 879, 882
BlsI GCNGC 7 cut(s) 19, 359, 412, 495, 568, 880, 883
Bme1390I CCNGG 3 cut(s) 326, 807, 813
Bme18I GGWCC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 2 cut(s) 459, 809
BmiI GGNNCC 2 cut(s) 460, 523
BmrFI CCNGG 3 cut(s) 326, 807, 813
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 6 cut(s) 60, 325, 405, 427, 805, 811
BsaWI WCCGGW 3 cut(s) 308, 373, 740
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 531, 812
Bse1I ACTGG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 2 cut(s) 807, 813
BseDI CCNNGG 6 cut(s) 60, 325, 405, 427, 805, 811
BseGI GGATG 1 cut(s) 784
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 325, 531, 812
BseMII CTCAG 3 cut(s) 235, 662, 705
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 5 cut(s) 344, 480, 578, 890, 893
BsgI GTGCAG 3 cut(s) 415, 479, 725
BshFI GGCC 1 cut(s) 810
BsiHKAI GWGCWC 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 4 cut(s) 309, 325, 374, 741
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 325, 531, 812
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 810
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 368, 900
Bsp13I TCCGGA 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 139, 224, 303, 521
BspACI CCGC 5 cut(s) 17, 246, 410, 543, 758
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 3 cut(s) 234, 661, 706
BspEI TCCGGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 460, 523
BspPI GGATC 2 cut(s) 516, 529
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 6 cut(s) 60, 325, 405, 427, 805, 811
BssMI GATC 4 cut(s) 139, 224, 303, 521
BssNAI GTATAC 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 316
Bst2UI CCWGG 2 cut(s) 807, 813
Bst4CI ACNGT 3 cut(s) 103, 146, 167
Bst6I CTCTTC 1 cut(s) 714
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 3 cut(s) 221, 648, 714
BstDSI CCRYGG 3 cut(s) 60, 405, 427
BstF5I GGATG 1 cut(s) 784
BstKTI GATC 4 cut(s) 142, 227, 306, 524
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 4 cut(s) 139, 224, 303, 521
BstMWI GCNNNNNNNGC 3 cut(s) 363, 448, 771
BstNI CCWGG 2 cut(s) 807, 813
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 3 cut(s) 324, 805, 811
BstV1I GCAGC 5 cut(s) 344, 480, 578, 890, 893
BstX2I RGATCY 3 cut(s) 224, 303, 521
BstYI RGATCY 3 cut(s) 224, 303, 521
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 810
BtgI CCRYGG 3 cut(s) 60, 405, 427
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 465, 656
Cac8I GCNNGC 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 459, 809
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 4 cut(s) 487, 522, 849, 884
CviAII CATG 1 cut(s) 439
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 221, 648, 714
DpnI GATC 4 cut(s) 141, 226, 305, 523
DpnII GATC 4 cut(s) 139, 224, 303, 521
DraIII CACNNNGTG 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 900
Eco32I GATATC 2 cut(s) 129, 379
Eco47I GGWCC 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 805, 811
EcoRV GATATC 2 cut(s) 129, 379
EcoT38I GRGCYC 1 cut(s) 900
FaeI CATG 1 cut(s) 442
FaiI YATR 4 cut(s) 51, 316, 440, 627
FaqI GGGAC 1 cut(s) 472
FatI CATG 1 cut(s) 438
FauI CCCGC 1 cut(s) 536
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 7 cut(s) 18, 358, 411, 494, 567, 879, 882
FokI GGATG 1 cut(s) 771
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 7 cut(s) 18, 358, 411, 494, 567, 879, 882
FspBI CTAG 3 cut(s) 201, 414, 946
GluI GCNGC 7 cut(s) 18, 358, 411, 494, 567, 879, 882
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 810
HapII CCGG 4 cut(s) 309, 325, 374, 741
Hin1II CATG 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 284, 401, 473, 797
HpaII CCGG 4 cut(s) 309, 325, 374, 741
HphI GGTGA 3 cut(s) 607, 755, 827
Hpy166II GTNNAC 4 cut(s) 39, 157, 316, 637
Hpy188I TCNGA 2 cut(s) 139, 224
Hpy188III TCNNGA 4 cut(s) 374, 616, 769, 788
Hpy8I GTNNAC 4 cut(s) 39, 157, 316, 637
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 67, 650, 820
HpyCH4III ACNGT 3 cut(s) 103, 146, 167
HpyCH4IV ACGT 2 cut(s) 639, 854
HpyCH4V TGCA 5 cut(s) 170, 396, 442, 496, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 448, 771
HpyF3I CTNAG 3 cut(s) 221, 648, 714
HpySE526I ACGT 2 cut(s) 639, 854
Hsp92II CATG 1 cut(s) 442
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 139, 224, 303, 521
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 5 cut(s) 344, 480, 578, 890, 893
MaeI CTAG 3 cut(s) 201, 414, 946
MaeII ACGT 2 cut(s) 639, 854
MaeIII GTNAC 3 cut(s) 79, 350, 798
MalI GATC 4 cut(s) 141, 226, 305, 523
MboI GATC 4 cut(s) 139, 224, 303, 521
MboII GAAGA 4 cut(s) 16, 262, 731, 830
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 3 cut(s) 224, 303, 521
MhlI GDGCHC 2 cut(s) 368, 900
MluCI AATT 1 cut(s) 861
MlyI GAGTC 3 cut(s) 410, 467, 806
MmeI TCCRAC 2 cut(s) 259, 408
MroI TCCGGA 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 4 cut(s) 309, 325, 374, 741
MspR9I CCNGG 3 cut(s) 326, 807, 813
MunI CAATTG 1 cut(s) 861
MvaI CCWGG 2 cut(s) 807, 813
MwoI GCNNNNNNNGC 3 cut(s) 363, 448, 771
NciI CCSGG 1 cut(s) 326
NdeII GATC 4 cut(s) 139, 224, 303, 521
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 2 cut(s) 460, 523
NmuCI GTSAC 2 cut(s) 350, 798
NspI RCATGY 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 7 cut(s) 19, 359, 412, 495, 568, 880, 883
PleI GAGTC 3 cut(s) 409, 467, 805
PpsI GAGTC 3 cut(s) 409, 467, 805
Psp1406I AACGTT 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 805, 811
PspGI CCWGG 2 cut(s) 805, 811
PspN4I GGNNCC 2 cut(s) 460, 523
PspPI GGNCC 2 cut(s) 459, 809
PspXI VCTCGAGB 1 cut(s) 452
PsuI RGATCY 3 cut(s) 224, 303, 521
PvuII CAGCTG 1 cut(s) 357
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 789
SatI GCNGC 7 cut(s) 18, 358, 411, 494, 567, 879, 882
Sau3AI GATC 4 cut(s) 139, 224, 303, 521
Sau96I GGNCC 2 cut(s) 459, 809
SchI GAGTC 3 cut(s) 410, 467, 806
ScrFI CCNGG 3 cut(s) 326, 807, 813
SduI GDGCHC 2 cut(s) 368, 900
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 459
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 2 cut(s) 452, 769
SmoI CTYRAG 2 cut(s) 452, 769
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 1 cut(s) 861
SsiI CCGC 5 cut(s) 17, 246, 410, 543, 758
SspMI CTAG 3 cut(s) 201, 414, 946
StyD4I CCNGG 3 cut(s) 324, 805, 811
TaaI ACNGT 3 cut(s) 103, 146, 167
TaiI ACGT 2 cut(s) 642, 857
TaqI TCGA 2 cut(s) 453, 549
TaqII GACCGA 1 cut(s) 476
TasI AATT 1 cut(s) 861
TatI WGTACW 1 cut(s) 156
TauI GCSGC 2 cut(s) 20, 413
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 2 cut(s) 472, 656
TseFI GTSAC 2 cut(s) 350, 798
TseI GCWGC 5 cut(s) 357, 493, 566, 878, 881
Tsp45I GTSAC 2 cut(s) 350, 798
TspDTI ATGAA 2 cut(s) 17, 138
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 472, 656
VpaK11BI GGWCC 1 cut(s) 459
XceI RCATGY 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 3 cut(s) 201, 414, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.