Prupe.6G351500_v2.0.a1

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015642
Physical Location & Seq
Forward (+)
29943952 .. 29946187
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G351500.1

Sequence Viewer

Length: 897 bp
ATGGATTTAACCTTGAAACCATTCTTTCTGTGTCTTGCAGCACTACTATTGCTACTACTTTCTCTACTATCTTCTGCAAACCCAATTAATTCTGACTACAATACCTTGGTATACAACCAATGCGCAAATCAGACATTTACTACTCCTCCAACACAACAAACCCTTTCATCCCTTTTCCAAGAACTAATTGCACACTCCTCCCAATCAAAGTTCTTCAAACACACCCAAGCCACCGGTGACGATGATGAGACTCAGACGGGCATTTCCGGTCTCTTCCAATGCATACAGGACATCAGCAACGAAGAGTGTCAGAGCTGCGTTTCCACTCTACCTGATCTATCAAACACCTTATGTAGAGAGTCTGTATCGGCTCGGGTTCAGCTACATGGCTGCTACATGCATTATGAGCTCGATGGGTACGATTCAGAGTCTTCAAATCATAAATTAATGCACCAGACCTGTGGGGAGTTATCAAATGGGTTGGCTGGTGGGTTCGAGGAGATGAGAGACGCAGCATTTGCAGCTCTGGAAAGTGGTATTGTGATGAATGGTGATGGGTTCTACAAAACGAGCTATGAAGCCGTACAAGTAATGGCACAGTGTGTGGGGGGCTTGGGGACCTGTGAATGTGGACTGTGTGTAAGCAGTGCAGTTCAAATTGCTGAAGCAGAATGTGGTGCTGCTCTTTCAGGTCAAATTTATTTGGAAGAGTGCTTCTTGAGCTATACTTACCATCCAGATGAAATACTTGACCACCCGCATCCAGAAAAAAGAAGAGACAGAAATGGAAGCAATGGGAAATCGGTGGCAATTGTTGTGGGAGGAGCAGCAGCTTTGTGTCTGGGGTTCGTTTTTCTGTTGTTCGTCAAGTCTTGGTCAAAGAAAGAAGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

299

Amino Acids

32.4

Weight (kDa)

4.65

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01600
malus_domestica MD00G1149100.v1.1 MD04G1232100.v1.1
prunus_persica Prupe.6G351500_v2.0.a1
pyrus_communis pycom04g20550
rosa_chinensis RchiOBHm_Chr3g0449411
rosa_laevigata RLG00000025833
rosa_multiflora Rmu_sc0019012.1_g000009 Rmu_sc0020017.1_g000002
rosa_roxburghii Rroxscaffold_6G00427370
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018200 Rh3BG018500 Rh3CG017400 Rh3DG018900
rosa_wichuraiana Rw3G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 758
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 1 cut(s) 684
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 419, 585
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 4 cut(s) 16, 217, 435, 656
AluBI AGCT 7 cut(s) 315, 382, 409, 524, 573, 723, 833
AluI AGCT 7 cut(s) 315, 382, 409, 524, 573, 723, 833
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 4 cut(s) 242, 275, 501, 771
Ama87I CYCGRG 1 cut(s) 372
ApeKI GCWGC 8 cut(s) 38, 315, 390, 512, 521, 680, 827, 830
ApoI RAATTY 1 cut(s) 696
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AseI ATTAAT 2 cut(s) 87, 446
AsiGI ACCGGT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 248, 563
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 618
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 8 cut(s) 50, 302, 377, 524, 533, 667, 839, 842
BccI CCATC 3 cut(s) 407, 548, 741
BceAI ACGGC 1 cut(s) 566
BcoDI GTCTC 4 cut(s) 242, 275, 501, 771
BisI GCNGC 8 cut(s) 39, 316, 391, 513, 522, 681, 828, 831
BlsI GCNGC 8 cut(s) 40, 317, 392, 514, 523, 682, 829, 832
Bme18I GGWCC 1 cut(s) 618
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 1 cut(s) 619
BmsI GCATC 1 cut(s) 769
BpiI GAAGAC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 739
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 2 cut(s) 233, 266
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse118I RCCGGY 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 799
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 3 cut(s) 167, 733, 760
BseMI GCAATG 1 cut(s) 799
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 4 cut(s) 135, 187, 512, 837
BseXI GCAGC 8 cut(s) 50, 302, 377, 524, 533, 667, 839, 842
BsgI GTGCAG 1 cut(s) 669
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 234, 267
BslFI GGGAC 1 cut(s) 631
BsmAI GTCTC 4 cut(s) 242, 275, 501, 771
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 758
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 799
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 334
BssNAI GTATAC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 600, 636
Bst6I CTCTTC 4 cut(s) 278, 297, 702, 769
BstAPI GCANNNNNTGC 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 167, 733, 760
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 4 cut(s) 242, 275, 501, 771
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 4 cut(s) 406, 518, 521, 720
BstNSI RCATGY 1 cut(s) 400
BstV1I GCAGC 8 cut(s) 50, 302, 377, 524, 533, 667, 839, 842
BstV2I GAAGAC 1 cut(s) 423
BstXI CCANNNNNNTGG 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 112
BtsCI GGATG 3 cut(s) 167, 733, 760
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 2 cut(s) 605, 652
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 618
CseI GACGC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 418, 584
CspAI ACCGGT 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 798, 833
CviAII CATG 2 cut(s) 386, 397
CviQI GTAC 2 cut(s) 418, 584
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 602
Eam1104I CTCTTC 4 cut(s) 278, 297, 702, 769
EarI CTCTTC 4 cut(s) 278, 297, 702, 769
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 618
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 2 cut(s) 284, 402
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 2 cut(s) 389, 400
FaiI YATR 9 cut(s) 112, 284, 352, 387, 398, 405, 441, 576, 726
FaqI GGGAC 1 cut(s) 631
FatI CATG 2 cut(s) 385, 396
FauI CCCGC 1 cut(s) 765
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 8 cut(s) 39, 316, 391, 513, 522, 681, 828, 831
FokI GGATG 3 cut(s) 154, 720, 747
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 8 cut(s) 39, 316, 391, 513, 522, 681, 828, 831
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 124
GluI GCNGC 8 cut(s) 39, 316, 391, 513, 522, 681, 828, 831
HapII CCGG 2 cut(s) 234, 267
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 389, 400
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 4 cut(s) 250, 359, 422, 428
HpaII CCGG 2 cut(s) 234, 267
HphI GGTGA 2 cut(s) 248, 563
Hpy166II GTNNAC 2 cut(s) 112, 632
Hpy188I TCNGA 5 cut(s) 94, 132, 255, 312, 427
Hpy188III TCNNGA 4 cut(s) 527, 718, 737, 764
Hpy8I GTNNAC 2 cut(s) 112, 632
HpyCH4III ACNGT 2 cut(s) 600, 636
HpyCH4V TGCA 8 cut(s) 38, 77, 191, 282, 400, 451, 521, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 518, 521, 720
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 389, 400
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 8 cut(s) 50, 302, 377, 524, 533, 667, 839, 842
LweI GCATC 1 cut(s) 769
MaeIII GTNAC 1 cut(s) 236
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 7 cut(s) 63, 205, 265, 314, 423, 719, 786
MfeI CAATTG 1 cut(s) 810
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 7 cut(s) 84, 88, 186, 443, 657, 696, 810
MlyI GAGTC 3 cut(s) 244, 368, 437
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 156, 208, 490, 815
Mph1103I ATGCAT 2 cut(s) 284, 402
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 3 cut(s) 8, 87, 446
MslI CAYNNNNRTG 1 cut(s) 738
MspI CCGG 2 cut(s) 234, 267
MunI CAATTG 1 cut(s) 810
MwoI GCNNNNNNNGC 4 cut(s) 406, 518, 521, 720
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 389, 400
NlaIV GGNNCC 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 236
NsbI TGCGCA 1 cut(s) 124
NsiI ATGCAT 2 cut(s) 284, 402
NspI RCATGY 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 422
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 8 cut(s) 40, 317, 392, 514, 523, 682, 829, 832
PleI GAGTC 3 cut(s) 244, 367, 436
PpsI GAGTC 3 cut(s) 244, 367, 436
PpuMI RGGWCCY 1 cut(s) 618
PshBI ATTAAT 2 cut(s) 87, 446
Psp124BI GAGCTC 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 619
PspPI GGNCC 1 cut(s) 618
PspPPI RGGWCCY 1 cut(s) 618
RsaI GTAC 2 cut(s) 419, 585
RsaNI GTAC 2 cut(s) 418, 584
RseI CAYNNNNRTG 1 cut(s) 738
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 8, 87, 446
SatI GCNGC 8 cut(s) 39, 316, 391, 513, 522, 681, 828, 831
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 618
SchI GAGTC 3 cut(s) 244, 368, 437
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 1 cut(s) 769
SgrAI CRCCGGYG 1 cut(s) 233
SinI GGWCC 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
Sse9I AATT 7 cut(s) 84, 88, 186, 443, 657, 696, 810
SsiI CCGC 1 cut(s) 758
SstI GAGCTC 1 cut(s) 411
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 600, 636
TaqI TCGA 2 cut(s) 411, 495
TasI AATT 7 cut(s) 84, 88, 186, 443, 657, 696, 810
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 3 cut(s) 8, 87, 446
Tru9I TTAA 3 cut(s) 8, 87, 446
TscAI CASTG 2 cut(s) 605, 652
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 8 cut(s) 38, 315, 390, 512, 521, 680, 827, 830
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 156, 560, 591, 756
TspRI CASTG 2 cut(s) 605, 652
VpaK11BI GGWCC 1 cut(s) 618
VspI ATTAAT 2 cut(s) 87, 446
XapI RAATTY 1 cut(s) 696
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 20
Zsp2I ATGCAT 2 cut(s) 284, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.