Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014756

Physical Location & Seq

Genomic Coordinates Forward (+)

956014 .. 956787

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTGGTGGGATAGGGATATAGAGCTCATATTCATTCAGTTCAAAGATGTGCCTGTTGCATACTCGGTGGAGCTTGGTTCAAAAGATGAAACGGTGAACGATATCAAAGAGAAGATAAAGAAGGAATACCCTGATGGTAGACACCTTAAGCCACAAGAAACCCTTGTTTACAAGAATCAAGAACTCAAGGGTGGAGACCTAATCACCGAGTATCATCTTCCCAAGAACACCCTTCTTCATGTAGCTGAGAGGAACGCTGTCGCCGCTCCGATGAGTCCTAAGAATGTCAAAGAGAAAGAGGAAGAAGGTCCTTGGGATTTGGGTGGTGTTCAATCAGTGAAACAAGGGCAACTTCAGCCGGTGGATTTGTTAACAATGGACGAGCCATTTTACAACAACCCTATTCTCAAGCCTAAAGAGATGTACGCCAACAGAAGTTCTAGTCCTCCAGCTCCCAATCTCAATGGTTTGCGTCGAAAAATGGTCGTTGAGGATGAGACGACTAGGGTTTGTGACAAGAGAGCTCGAATTAGTACCCTACCTAACGAGACAACTAGGGTTTGTGACAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.02

Weight (kDa)

6.0

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01680 FvH4_6g01700
rosa_laevigata	RLG00000012435 RLG00000025827
rosa_multiflora	Rmu_sc0010766.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427430
rosa_rugosa	Rorug02G0621400 Rorug06G0194500
rosa_samantha	Rh3AG019100 Rh3BG019500 Rh3CG018300 Rh3DG019600 Rh6AG304800 Rh6BG310800 Rh6CG318900 Rh6DG303800
rosa_wichuraiana	Rw3G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	428, 538
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	46, 84, 335
AluBI	AGCT	5 cut(s)	28, 76, 248, 455, 527
AluI	AGCT	5 cut(s)	28, 76, 248, 455, 527
Alw21I	GWGCWC	2 cut(s)	30, 529
Alw26I	GTCTC	3 cut(s)	192, 494, 545
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	109, 199
AvaII	GGWCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	30, 529
Bbv12I	GWGCWC	2 cut(s)	30, 529
BccI	CCATC	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	192, 494, 545
BfaI	CTAG	3 cut(s)	444, 507, 558
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	173, 395
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	30, 529
BsiSI	CCGG	1 cut(s)	362
BsmAI	GTCTC	3 cut(s)	192, 494, 545
BsmBI	CGTCTC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	30, 529
BspACI	CCGC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	249, 282
BstF5I	GGATG	1 cut(s)	502
BstMAI	GTCTC	3 cut(s)	192, 494, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 358
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	427, 537
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	2 cut(s)	427, 537
DdeI	CTNAG	2 cut(s)	249, 282
Ecl136II	GAGCTC	2 cut(s)	28, 527
Eco130I	CCWWGG	1 cut(s)	314
Eco24I	GRGCYC	2 cut(s)	30, 529
Eco31I	GGTCTC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	2 cut(s)	28, 527
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	28, 527
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	314
EcoT38I	GRGCYC	2 cut(s)	30, 529
ErhI	CCWWGG	1 cut(s)	314
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	23, 32, 64, 243
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 339, 371
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	2 cut(s)	30, 529
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	444, 507, 558
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	435
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	178, 277
HpaI	GTTAAC	1 cut(s)	375
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	109, 199
Hpy166II	GTNNAC	4 cut(s)	100, 143, 172, 375
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	4 cut(s)	100, 143, 172, 375
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	118, 245, 302
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 358
HpyF3I	CTNAG	2 cut(s)	249, 282
Hsp92II	CATG	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	375
LmnI	GCTCC	3 cut(s)	73, 274, 460
LpnPI	CCDG	5 cut(s)	69, 147, 375, 465, 556
MaeI	CTAG	3 cut(s)	444, 507, 558
MaeIII	GTNAC	2 cut(s)	515, 566
MbiI	CCGCTC	1 cut(s)	269
MboII	GAAGA	4 cut(s)	127, 212, 230, 317
MhlI	GDGCHC	2 cut(s)	30, 529
MluCI	AATT	2 cut(s)	531, 574
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	246, 295, 459, 487
MseI	TTAA	2 cut(s)	150, 374
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	266, 358
NlaIII	CATG	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	515, 566
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	311
Psp124BI	GAGCTC	2 cut(s)	30, 529
Psp5II	RGGWCCY	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	428, 538
RsaNI	GTAC	2 cut(s)	427, 537
SacI	GAGCTC	2 cut(s)	30, 529
SaqAI	TTAA	2 cut(s)	150, 374
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	30, 529
SetI	ASST	9 cut(s)	30, 78, 150, 204, 250, 313, 457, 529, 547
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	149, 188, 410
SmoI	CTYRAG	3 cut(s)	149, 188, 410
Sse9I	AATT	2 cut(s)	531, 574
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	444, 507, 558
SstI	GAGCTC	2 cut(s)	30, 529
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	478, 529
TasI	AATT	2 cut(s)	531, 574
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	150, 374
Tru9I	TTAA	2 cut(s)	150, 374
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	515, 566
Tsp45I	GTSAC	2 cut(s)	515, 566
TspDTI	ATGAA	3 cut(s)	25, 105, 230
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	3 cut(s)	444, 507, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.