Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014756

Physical Location & Seq

Genomic Coordinates Forward (+)

1236301 .. 1237365

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATTTGGATAGGGATATAGAACTTATATTCATTCAATTTAAAGATGTGCCTTTCTCGTACTCTGTGGAACTGGGTTCAACAGATGAAACTGTGGACGATATCAAAGAAAAGCTAAGGAAGGAATATCCGAATGGTAGGCACCTGAAGCCCCATGAAACCCTTGTTTACAAGAATCAGGAACTGAAGGATGGACACCTATTGGCCGACTATCATCTTCCCAAGAACACCCTCCTGTATGTAGCTGAGAGGAACACTAATCCCTCGAGTCCGGAGAACCTCAAAGAGAAAGAGGAAGAGCCTAGTGTTCCGTCGAGTCCTAAGAACCTCAAAGAGAAAGAGGAAGGGCCTTGGGATTTGGGTGTCATTCAATCAGTGAAACACAAGCAACTTCTGCCATTGGATTTATTAACAATGGACGAGCCTTTTTACGACAACCCTTTTATTAAGCCTAAACAGATGTATGTCAACACAAATTCTACAGTTAAGGATGGAACGTCAAGGACTAGGGTTTGTGACAAGAGAGCCCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGTCGACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGACAACTAGGGTTTGTGACAAGAAAGCTCGAATGAGCCCCCCACATAATGTAGGTTCCAATGCCATCGAGATCATTGAGGATGAGACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCATCTAATGCTGTAGGTTCCAATGCCATCAAGCTAGGGATAGACGGGTTCTTGCCACGGGCATCTGCAGGCGTTGAAGGTGCCAAGAAGAAGGGTCGGCATGTGGGAAGTAAAAATAAGAAGACCTATAAGGGACTTGCTTATGAGCAGTTCCCATGGTTACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

36.27

Weight (kDa)

8.18

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01680 FvH4_6g01700
rosa_laevigata	RLG00000012435 RLG00000025827
rosa_multiflora	Rmu_sc0010766.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427430
rosa_rugosa	Rorug02G0621400 Rorug06G0194500
rosa_samantha	Rh3AG019100 Rh3BG019500 Rh3CG018300 Rh3DG019600 Rh6AG304800 Rh6BG310800 Rh6CG318900 Rh6DG303800
rosa_wichuraiana	Rw3G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 881
AccI	GTMKAC	1 cut(s)	590
AccIII	TCCGGA	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	2 cut(s)	167, 206
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	38, 81, 371, 878
AluBI	AGCT	6 cut(s)	115, 245, 617, 704, 788, 835
AluI	AGCT	6 cut(s)	115, 245, 617, 704, 788, 835
Alw21I	GWGCWC	2 cut(s)	619, 790
Alw26I	GTCTC	2 cut(s)	671, 755
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	265
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	2 cut(s)	204, 347
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	141, 881
BanII	GRGCYC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
BbsI	GAAGAC	1 cut(s)	929
Bbv12I	GWGCWC	2 cut(s)	619, 790
BccI	CCATC	7 cut(s)	185, 485, 575, 665, 749, 811, 836
BcoDI	GTCTC	2 cut(s)	671, 755
BfaI	CTAG	6 cut(s)	303, 507, 597, 684, 768, 836
BfmI	CTRYAG	5 cut(s)	480, 552, 642, 813, 867
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	6 cut(s)	143, 559, 649, 733, 820, 883
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	872
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	350, 857, 956
BsaWI	WCCGGW	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	350, 857, 956
BseGI	GGATG	3 cut(s)	196, 496, 763
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	206, 349
BshNI	GGYRCC	2 cut(s)	141, 881
BsiHKAI	GWGCWC	2 cut(s)	619, 790
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	948
BsmAI	GTCTC	2 cut(s)	671, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	2 cut(s)	206, 349
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	573, 663, 747
Bsp19I	CCATGG	1 cut(s)	956
BspANI	GGCC	2 cut(s)	206, 349
BspCNI	CTCAG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	271
BspLI	GGNNCC	6 cut(s)	143, 559, 649, 733, 820, 883
BspMAI	CTGCAG	1 cut(s)	871
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	2 cut(s)	141, 881
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	350, 857, 956
BssMI	GATC	3 cut(s)	573, 663, 747
BssT1I	CCWWGG	2 cut(s)	350, 956
Bst4CI	ACNGT	3 cut(s)	94, 484, 966
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	3 cut(s)	116, 246, 321
BstDSI	CCRYGG	2 cut(s)	857, 956
BstF5I	GGATG	3 cut(s)	196, 496, 763
BstKTI	GATC	3 cut(s)	576, 666, 750
BstMAI	GTCTC	2 cut(s)	671, 755
BstMBI	GATC	3 cut(s)	573, 663, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 394
BstNSI	RCATGY	1 cut(s)	905
BstSFI	CTRYAG	5 cut(s)	480, 552, 642, 813, 867
BstV2I	GAAGAC	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	206, 349
BtgI	CCRYGG	2 cut(s)	857, 956
BtsCI	GGATG	3 cut(s)	196, 496, 763
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	871
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	155, 584, 674, 902, 957
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	116, 246, 321
DpnI	GATC	3 cut(s)	575, 665, 749
DpnII	GATC	3 cut(s)	573, 663, 747
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	2 cut(s)	617, 788
Eco130I	CCWWGG	2 cut(s)	350, 956
Eco24I	GRGCYC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	617, 788
Eco57I	CTGAAG	2 cut(s)	167, 206
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	2 cut(s)	617, 788
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	350, 956
EcoT38I	GRGCYC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
ErhI	CCWWGG	2 cut(s)	350, 956
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	5 cut(s)	158, 587, 677, 905, 960
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	5 cut(s)	154, 583, 673, 901, 956
FblI	GTMKAC	1 cut(s)	590
FokI	GGATG	3 cut(s)	203, 503, 770
FriOI	GRGCYC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
FspBI	CTAG	6 cut(s)	303, 507, 597, 684, 768, 836
HaeIII	GGCC	2 cut(s)	206, 349
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	5 cut(s)	158, 587, 677, 905, 960
HincII	GTYRAC	2 cut(s)	469, 591
HindII	GTYRAC	2 cut(s)	469, 591
HinfI	GANTC	4 cut(s)	175, 268, 316, 587
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	4 cut(s)	97, 169, 469, 591
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	5 cut(s)	179, 272, 571, 661, 745
Hpy8I	GTNNAC	4 cut(s)	97, 169, 469, 591
Hpy99I	CGWCG	2 cut(s)	316, 595
HpyAV	CCTTC	5 cut(s)	115, 181, 338, 872, 886
HpyCH4III	ACNGT	3 cut(s)	94, 484, 966
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	1 cut(s)	869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 394
HpyF3I	CTNAG	3 cut(s)	116, 246, 321
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	5 cut(s)	158, 587, 677, 905, 960
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	573, 663, 747
LguI	GCTCTTC	1 cut(s)	291
LpnPI	CCDG	6 cut(s)	59, 158, 164, 248, 285, 855
LweI	GCATC	1 cut(s)	872
MaeI	CTAG	6 cut(s)	303, 507, 597, 684, 768, 836
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	5 cut(s)	515, 605, 692, 776, 960
MalI	GATC	3 cut(s)	575, 665, 749
MboI	GATC	3 cut(s)	573, 663, 747
MboII	GAAGA	4 cut(s)	209, 308, 901, 934
MhlI	GDGCHC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
MluCI	AATT	2 cut(s)	38, 475
MlyI	GAGTC	3 cut(s)	277, 325, 596
MnlI	CCTC	8 cut(s)	242, 243, 274, 286, 290, 334, 338, 748
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	4 cut(s)	42, 410, 447, 486
MspI	CCGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	148, 394
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	3 cut(s)	573, 663, 747
NlaIII	CATG	5 cut(s)	158, 587, 677, 905, 960
NlaIV	GGNNCC	6 cut(s)	143, 559, 649, 733, 820, 883
NmuCI	GTSAC	4 cut(s)	515, 605, 692, 776
NspI	RCATGY	1 cut(s)	905
PaeR7I	CTCGAG	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	3 cut(s)	276, 324, 595
PpsI	GAGTC	3 cut(s)	276, 324, 595
Psp124BI	GAGCTC	2 cut(s)	619, 790
PspN4I	GGNNCC	6 cut(s)	143, 559, 649, 733, 820, 883
PspPI	GGNCC	1 cut(s)	347
PspXI	VCTCGAGB	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	2 cut(s)	619, 790
SalI	GTCGAC	1 cut(s)	589
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	42, 410, 447, 486
Sau3AI	GATC	3 cut(s)	573, 663, 747
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	3 cut(s)	277, 325, 596
SduI	GDGCHC	7 cut(s)	529, 539, 619, 629, 716, 790, 800
SfaNI	GCATC	1 cut(s)	872
SfcI	CTRYAG	5 cut(s)	480, 552, 642, 813, 867
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	38, 475
SspMI	CTAG	6 cut(s)	303, 507, 597, 684, 768, 836
SstI	GAGCTC	2 cut(s)	619, 790
StyI	CCWWGG	2 cut(s)	350, 956
TaaI	ACNGT	3 cut(s)	94, 484, 966
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	7 cut(s)	266, 314, 570, 590, 660, 706, 744
TasI	AATT	2 cut(s)	38, 475
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	4 cut(s)	42, 410, 447, 486
Tru9I	TTAA	4 cut(s)	42, 410, 447, 486
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	4 cut(s)	515, 605, 692, 776
Tsp45I	GTSAC	4 cut(s)	515, 605, 692, 776
TspDTI	ATGAA	3 cut(s)	22, 102, 171
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	381
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	6 cut(s)	303, 507, 597, 684, 768, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.