Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014756

Physical Location & Seq

Genomic Coordinates Forward (+)

1281911 .. 1284276

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGATTTGGATCGGGATATAGAACTTATATTCATTCAATTTAAAGATGTGCCTTTCTCGTACTCTGTGGAACTGGGTTCAACAGATGAAACTGTGGACGATATCAAAGAAAAGCTAAGGAAGGAATATCCGAATGGTAGGCACCTCAAGCCCCATGAAACCCTTGTTTACAAGAATCAAGAACTGAAGGATGGACACCTATTGGCCGACTATCATCTCCCCAAGAACACCCTCCTGTATGTAGCTGAGAGGAACACTAATCCCTCGAGTCCTGAGAACCTCAAAGAGAAAGAGGAAGAGCCTAGTGTTCCGTCGAGTCCTAAGAACCTCGAAGAGAAAGACCTCAAAGAGAAAGAGGAAGGGCCTTGGGATTTGGGTGTCATTCAATCGGTGAAACACAAGCAACTTCTGCCATTGGATTTATTAACAATGGACGAGCCTTTTTACGACAACCCTTTTATTAAGCCTAAACAGATGTATGTCAACACAAATTCTACAGTTAAGGATGGAACGTCAAGGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGTCGACGACTAGGGTTTGTGACAAGAGAGCTCGTCTGAGCCCCCCACCTAATGCTGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.28

Weight (kDa)

5.48

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01680 FvH4_6g01700
rosa_laevigata	RLG00000012435 RLG00000025827
rosa_multiflora	Rmu_sc0010766.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427430
rosa_rugosa	Rorug02G0621400 Rorug06G0194500
rosa_samantha	Rh3AG019100 Rh3BG019500 Rh3CG018300 Rh3DG019600 Rh6AG304800 Rh6BG310800 Rh6CG318900 Rh6DG303800
rosa_wichuraiana	Rw3G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	38, 81, 386
AluBI	AGCT	5 cut(s)	115, 245, 542, 632, 662
AluI	AGCT	5 cut(s)	115, 245, 542, 632, 662
Alw21I	GWGCWC	2 cut(s)	544, 634
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	204, 362
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	4 cut(s)	544, 554, 634, 644
Bbv12I	GWGCWC	2 cut(s)	544, 634
BccI	CCATC	3 cut(s)	185, 500, 590
BfaI	CTAG	3 cut(s)	303, 522, 612
BfmI	CTRYAG	3 cut(s)	495, 567, 657
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	143, 574
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	196, 511
BseJI	GATNNNNATC	1 cut(s)	9
BseMII	CTCAG	3 cut(s)	237, 264, 629
BseNI	ACTGG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	206, 364
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	544, 634
BsiHKCI	CYCGRG	1 cut(s)	265
BsnI	GGCC	2 cut(s)	206, 364
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	4 cut(s)	544, 554, 634, 644
Bsp143I	GATC	2 cut(s)	10, 588
BspANI	GGCC	2 cut(s)	206, 364
BspCNI	CTCAG	3 cut(s)	238, 265, 630
BspLI	GGNNCC	2 cut(s)	143, 574
BspPI	GGATC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	10, 588
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	94, 499
Bst6I	CTCTTC	2 cut(s)	291, 327
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	116, 246, 273, 321, 638
BstF5I	GGATG	2 cut(s)	196, 511
BstKTI	GATC	2 cut(s)	13, 591
BstMBI	GATC	2 cut(s)	10, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 409
BstSFI	CTRYAG	3 cut(s)	495, 567, 657
BsuRI	GGCC	2 cut(s)	206, 364
BtsCI	GGATG	2 cut(s)	196, 511
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	155, 599
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	5 cut(s)	116, 246, 273, 321, 638
DpnI	GATC	2 cut(s)	12, 590
DpnII	GATC	2 cut(s)	10, 588
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	291, 327
EarI	CTCTTC	2 cut(s)	291, 327
Ecl136II	GAGCTC	2 cut(s)	542, 632
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	4 cut(s)	544, 554, 634, 644
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	542, 632
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	2 cut(s)	542, 632
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	4 cut(s)	544, 554, 634, 644
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	158, 602
FaiI	YATR	7 cut(s)	20, 29, 156, 240, 480, 548, 600
FatI	CATG	2 cut(s)	154, 598
FblI	GTMKAC	1 cut(s)	605
FokI	GGATG	2 cut(s)	203, 518
FriOI	GRGCYC	4 cut(s)	544, 554, 634, 644
FspBI	CTAG	3 cut(s)	303, 522, 612
HaeIII	GGCC	2 cut(s)	206, 364
Hin1II	CATG	2 cut(s)	158, 602
HincII	GTYRAC	2 cut(s)	484, 606
HindII	GTYRAC	2 cut(s)	484, 606
HinfI	GANTC	4 cut(s)	175, 268, 316, 602
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	4 cut(s)	97, 169, 484, 606
Hpy188I	TCNGA	2 cut(s)	132, 639
Hpy188III	TCNNGA	4 cut(s)	14, 179, 272, 586
Hpy8I	GTNNAC	4 cut(s)	97, 169, 484, 606
Hpy99I	CGWCG	2 cut(s)	316, 610
HpyAV	CCTTC	3 cut(s)	115, 181, 353
HpyCH4III	ACNGT	2 cut(s)	94, 499
HpyCH4IV	ACGT	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 409
HpyF3I	CTNAG	5 cut(s)	116, 246, 273, 321, 638
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	2 cut(s)	158, 602
Kzo9I	GATC	2 cut(s)	10, 588
LguI	GCTCTTC	1 cut(s)	291
LpnPI	CCDG	3 cut(s)	59, 248, 285
MaeI	CTAG	3 cut(s)	303, 522, 612
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	530, 620
MalI	GATC	2 cut(s)	12, 590
MboI	GATC	2 cut(s)	10, 588
MboII	GAAGA	2 cut(s)	308, 344
MhlI	GDGCHC	4 cut(s)	544, 554, 634, 644
MluCI	AATT	2 cut(s)	38, 490
MlyI	GAGTC	3 cut(s)	277, 325, 611
MnlI	CCTC	9 cut(s)	155, 242, 243, 274, 286, 290, 338, 349, 353
MseI	TTAA	4 cut(s)	42, 425, 462, 501
MwoI	GCNNNNNNNGC	2 cut(s)	148, 409
NdeII	GATC	2 cut(s)	10, 588
NlaIII	CATG	2 cut(s)	158, 602
NlaIV	GGNNCC	2 cut(s)	143, 574
NmuCI	GTSAC	2 cut(s)	530, 620
PaeR7I	CTCGAG	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	3 cut(s)	276, 324, 610
PpsI	GAGTC	3 cut(s)	276, 324, 610
Psp124BI	GAGCTC	2 cut(s)	544, 634
PspN4I	GGNNCC	2 cut(s)	143, 574
PspPI	GGNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	265
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	2 cut(s)	544, 634
SalI	GTCGAC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	42, 425, 462, 501
Sau3AI	GATC	2 cut(s)	10, 588
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	3 cut(s)	277, 325, 611
SduI	GDGCHC	4 cut(s)	544, 554, 634, 644
SfcI	CTRYAG	3 cut(s)	495, 567, 657
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	146, 265
SmoI	CTYRAG	2 cut(s)	146, 265
Sse9I	AATT	2 cut(s)	38, 490
SspMI	CTAG	3 cut(s)	303, 522, 612
SstI	GAGCTC	2 cut(s)	544, 634
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	94, 499
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	5 cut(s)	266, 314, 330, 585, 605
TasI	AATT	2 cut(s)	38, 490
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	4 cut(s)	42, 425, 462, 501
Tru9I	TTAA	4 cut(s)	42, 425, 462, 501
TseFI	GTSAC	2 cut(s)	530, 620
Tsp45I	GTSAC	2 cut(s)	530, 620
TspDTI	ATGAA	3 cut(s)	22, 102, 171
TspGWI	ACGGA	1 cut(s)	300
XapI	RAATTY	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	3 cut(s)	303, 522, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.