Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014756

Physical Location & Seq

Genomic Coordinates Forward (+)

48038228 .. 48041550

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATTTGGATAGGGATATAGAACTTATATTCATTCAATTTAAAGATGTGCCTTTCTCGTACTCTGTGGAACTGGGTTCAACAGATGAAACGGTGGACGATATCAAAGAAAAGCTAAGGAAGGAATATCCGAATGGTAGACACCTTAAGCCCCATGAAACCCTTGTTTACAAGAATCAAGAACTGAAGGATGGACACCTATTGGTCGACTATCATCTCCCCAAGAACACCCTCCTGTATGTAGCTGAGAGGAACACTAATCCCTCGAGTCCTGAGAACCTCAAAGAGAAAGAGGAAGAGCCTAGTGTTCCGTCGAGTCCTAAGAACCTCGAAGAGAAAGACCTCAAAGAGAAACAGGAAGGGCCTTGGGATTTGGGTGTCATTCAATCAGTGAAACACAAGCAACTTCTGCCGGTGGATTTATTAACAATGGACGAGCCCTTTTACGACAAACCTTTTATTAAGCCTAAACAGGTGTATGTCAACACAAATTCTACCGTTAAGGATGGAACGTCAACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGACTACTAGGGTTTGTGACGAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGACGACTAGGGTTTGTGACAAGAGAGCTCGGATGAGCCCCCCAAATAATGTAGGTTCCAATGCCATCGAGATCATTGAGGATGAGACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCATCTAATGCTGTAGGTTCCAATGCCATCGAGCAAGGGATAGGCGGGTTCTCGCAGCGGGCATCTGCAGCGGTTGAAGGTGCCAAGAAGAAGGGTCGACCTGTGGGAATTTGTTCCATCAATCTACATTATTGGACTATTTCTACACCCCCACTATTGACCCAAAACATGTACCACTTCTCCAAATTCTTATCATGTCATCTTCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.43

Weight (kDa)

6.16

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01680 FvH4_6g01700
rosa_laevigata	RLG00000012435 RLG00000025827
rosa_multiflora	Rmu_sc0010766.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427430
rosa_rugosa	Rorug02G0621400 Rorug06G0194500
rosa_samantha	Rh3AG019100 Rh3BG019500 Rh3CG018300 Rh3DG019600 Rh6AG304800 Rh6BG310800 Rh6CG318900 Rh6DG303800
rosa_wichuraiana	Rw3G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	893
AccI	GTMKAC	3 cut(s)	139, 207, 910
AciI	CCGC	3 cut(s)	858, 871, 884
AcsI	RAATTY	3 cut(s)	490, 921, 998
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	62, 986
AflII	CTTAAG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	4 cut(s)	38, 81, 386, 890
AluBI	AGCT	6 cut(s)	115, 245, 542, 629, 716, 800
AluI	AGCT	6 cut(s)	115, 245, 542, 629, 716, 800
Alw21I	GWGCWC	4 cut(s)	544, 631, 718, 802
Alw26I	GTCTC	3 cut(s)	596, 683, 767
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	868, 881
ApoI	RAATTY	3 cut(s)	490, 921, 998
Asp700I	GAANNNNTTC	1 cut(s)	925
AspS9I	GGNCC	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
Bbv12I	GWGCWC	4 cut(s)	544, 631, 718, 802
BbvI	GCAGC	2 cut(s)	880, 893
BccI	CCATC	8 cut(s)	185, 500, 590, 677, 761, 823, 848, 938
BcoDI	GTCTC	3 cut(s)	596, 683, 767
BfaI	CTAG	5 cut(s)	303, 522, 609, 696, 780
BfmI	CTRYAG	4 cut(s)	567, 654, 825, 879
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	869, 882
BlsI	GCNGC	2 cut(s)	870, 883
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	884
BmuI	ACTGGG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	977, 1007
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	4 cut(s)	196, 511, 726, 775
BseMII	CTCAG	2 cut(s)	237, 264
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	880, 893
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	893
BsiHKAI	GWGCWC	4 cut(s)	544, 631, 718, 802
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	413
BsmAI	GTCTC	3 cut(s)	596, 683, 767
BsmBI	CGTCTC	2 cut(s)	683, 767
BsnI	GGCC	1 cut(s)	364
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
Bsp143I	GATC	3 cut(s)	588, 675, 759
BspACI	CCGC	3 cut(s)	858, 871, 884
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	238, 265
BspLI	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
BspMAI	CTGCAG	1 cut(s)	883
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	893
BspTI	CTTAAG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	3 cut(s)	588, 675, 759
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	94, 499
Bst6I	CTCTTC	2 cut(s)	291, 327
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	4 cut(s)	116, 246, 273, 321
BstF5I	GGATG	4 cut(s)	196, 511, 726, 775
BstKTI	GATC	3 cut(s)	591, 678, 762
BstMAI	GTCTC	3 cut(s)	596, 683, 767
BstMBI	GATC	3 cut(s)	588, 675, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 881
BstNSI	RCATGY	1 cut(s)	985
BstSFI	CTRYAG	4 cut(s)	567, 654, 825, 879
BstV1I	GCAGC	2 cut(s)	880, 893
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	4 cut(s)	196, 511, 726, 775
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	873
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	61, 985
CviAII	CATG	5 cut(s)	155, 599, 686, 982, 1008
CviQI	GTAC	2 cut(s)	61, 985
DdeI	CTNAG	4 cut(s)	116, 246, 273, 321
DpnI	GATC	3 cut(s)	590, 677, 761
DpnII	GATC	3 cut(s)	588, 675, 759
DraI	TTTAAA	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	291, 327
EarI	CTCTTC	2 cut(s)	291, 327
Ecl136II	GAGCTC	4 cut(s)	542, 629, 716, 800
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	4 cut(s)	542, 629, 716, 800
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	4 cut(s)	542, 629, 716, 800
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
ErhI	CCWWGG	1 cut(s)	365
Esp3I	CGTCTC	2 cut(s)	683, 767
FaeI	CATG	5 cut(s)	158, 602, 689, 985, 1011
FatI	CATG	5 cut(s)	154, 598, 685, 981, 1007
FauI	CCCGC	2 cut(s)	851, 864
FblI	GTMKAC	3 cut(s)	139, 207, 910
Fnu4HI	GCNGC	2 cut(s)	869, 882
FokI	GGATG	4 cut(s)	203, 518, 733, 782
FriOI	GRGCYC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
Fsp4HI	GCNGC	2 cut(s)	869, 882
FspBI	CTAG	5 cut(s)	303, 522, 609, 696, 780
GluI	GCNGC	2 cut(s)	869, 882
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	5 cut(s)	158, 602, 689, 985, 1011
HincII	GTYRAC	4 cut(s)	208, 484, 516, 911
HindII	GTYRAC	4 cut(s)	208, 484, 516, 911
HinfI	GANTC	3 cut(s)	175, 268, 316
HpaII	CCGG	1 cut(s)	413
Hpy166II	GTNNAC	7 cut(s)	97, 140, 169, 208, 484, 516, 911
Hpy188I	TCNGA	2 cut(s)	132, 720
Hpy188III	TCNNGA	5 cut(s)	179, 272, 586, 673, 757
Hpy8I	GTNNAC	7 cut(s)	97, 140, 169, 208, 484, 516, 911
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	115, 181, 353, 884, 898
HpyCH4III	ACNGT	2 cut(s)	94, 499
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	1 cut(s)	881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 881
HpyF3I	CTNAG	4 cut(s)	116, 246, 273, 321
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	158, 602, 689, 985, 1011
Kzo9I	GATC	3 cut(s)	588, 675, 759
LguI	GCTCTTC	1 cut(s)	291
LpnPI	CCDG	7 cut(s)	59, 248, 285, 341, 426, 458, 927
Lsp1109I	GCAGC	2 cut(s)	880, 893
LweI	GCATC	1 cut(s)	884
MaeI	CTAG	5 cut(s)	303, 522, 609, 696, 780
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	4 cut(s)	530, 617, 704, 788
MalI	GATC	3 cut(s)	590, 677, 761
MboI	GATC	3 cut(s)	588, 675, 759
MboII	GAAGA	4 cut(s)	308, 344, 913, 1007
MhlI	GDGCHC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
MluCI	AATT	4 cut(s)	38, 490, 921, 998
MlyI	GAGTC	2 cut(s)	277, 325
MnlI	CCTC	8 cut(s)	242, 243, 274, 286, 290, 338, 353, 760
MroXI	GAANNNNTTC	1 cut(s)	925
MseI	TTAA	5 cut(s)	42, 147, 425, 462, 501
MspA1I	CMGCKG	2 cut(s)	871, 884
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	409, 881
NdeII	GATC	3 cut(s)	588, 675, 759
NlaIII	CATG	5 cut(s)	158, 602, 689, 985, 1011
NlaIV	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
NmuCI	GTSAC	4 cut(s)	530, 617, 704, 788
NspI	RCATGY	1 cut(s)	985
PaeR7I	CTCGAG	1 cut(s)	265
PciI	ACATGT	1 cut(s)	981
PciSI	GCTCTTC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	870, 883
PleI	GAGTC	2 cut(s)	276, 324
PpsI	GAGTC	2 cut(s)	276, 324
PscI	ACATGT	1 cut(s)	981
Psp124BI	GAGCTC	4 cut(s)	544, 631, 718, 802
PspN4I	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
PspPI	GGNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	883
RsaI	GTAC	2 cut(s)	62, 986
RsaNI	GTAC	2 cut(s)	61, 985
SacI	GAGCTC	4 cut(s)	544, 631, 718, 802
SalI	GTCGAC	2 cut(s)	206, 909
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	42, 147, 425, 462, 501
SatI	GCNGC	2 cut(s)	869, 882
Sau3AI	GATC	3 cut(s)	588, 675, 759
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	277, 325
SduI	GDGCHC	9 cut(s)	441, 544, 554, 631, 641, 718, 728, 802, 812
SfaNI	GCATC	1 cut(s)	884
SfcI	CTRYAG	4 cut(s)	567, 654, 825, 879
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	146, 265
SmoI	CTYRAG	2 cut(s)	146, 265
Sse9I	AATT	4 cut(s)	38, 490, 921, 998
SsiI	CCGC	3 cut(s)	858, 871, 884
SspMI	CTAG	5 cut(s)	303, 522, 609, 696, 780
SstI	GAGCTC	4 cut(s)	544, 631, 718, 802
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	94, 499
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	9 cut(s)	207, 266, 314, 330, 585, 672, 756, 843, 910
TasI	AATT	4 cut(s)	38, 490, 921, 998
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	5 cut(s)	42, 147, 425, 462, 501
Tru9I	TTAA	5 cut(s)	42, 147, 425, 462, 501
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	4 cut(s)	530, 617, 704, 788
TseI	GCWGC	2 cut(s)	868, 881
Tsp45I	GTSAC	4 cut(s)	530, 617, 704, 788
TspDTI	ATGAA	3 cut(s)	22, 102, 171
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	3 cut(s)	490, 921, 998
XceI	RCATGY	1 cut(s)	985
XhoI	CTCGAG	1 cut(s)	265
XmiI	GTMKAC	3 cut(s)	139, 207, 910
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	5 cut(s)	303, 522, 609, 696, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.