Rorug06G0194500

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
31385830 .. 31398606
12777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0194500.1

Sequence Viewer

Length: 1431 bp
ATGGCTAAGCTACAACAAAGCTCCTACGTTGTGTGCCTGGCATTTTCTATAGTTCTAAATCTGTCATTGATATTCAAGCTCTATGGACATGGAGGTCAGTGGGAGCTCAGTTGGAGCAGAAGGGCAGCAGAAGAAGCCGAGTACGTCGCCGCCGTCCCTTGCTCGGGGCATGGCAGAACCTACTTGGATGGCTTGGTTCTTGATGGCAAGCAACCCGCTTGTGAGTGCAATTCTTGCTATGGAGGATCAGATTGTTCTCAGTTCTTAACTGATTGTGAATCAAATGCTGACGGTGGGGATCCATATTTCTTAGAGCCCTTTTGGATGCAACATGCTTCTGAAAGTGCAATTCTAGTAGCAGGGTGGCATCGAATGGGCTATACTTTCTCTGATCATGCTTACATCTCACAAGAGCTTGAGAGGCTCATCCGCAAAGTACACGACATTGCTGGTAATGCAGTCACTCAAGCAAGGTACATTGTAATTGGTGCCGGCTCAACCCATCTCCTCAACGCTGCAGTTAAAGCGCTATCTCTCTCATCAACCAGTAGTTTCAACTCATCATCATCCTCACCAGCTAGTGTTGTTGTTTCAATTCCTTTTTACGCGCTTTATGAAACGCAAACGGAATACTTCCGATCATTGGATTACAAGTTCGAAGGGGATGGTTCGTTGCTGCCGAACATCACAGATGGAACTAAGAGGGTTATTGAGTTTGTAACCGCACCAAACAATCCTGATGGGAAGCTAAACAAAGCAAATTTTCAAGGACCAAATTCCGCAGCAATCTATGATCGTGTTTATTATTGGCCACATTTCACACCAATTCCAACTCCAGCAAATGACGATGTCATGGTGTTTTCAATTTCCAAGCTCACTGGCCATGCTGGTACAAGATTAGGGTGGGCAGTGATAAAGGATGAGGCAGTGTACCAAAGAATGTTGAATCACACTGTGATAAGTAACTTGGGTATTTCTCGCGATACTCAGCTAAGAGCTTTCAAGCTTTTGAATGTAGTCGTAGAAGGTGGAGGGAAAGAAATTTTCGAATTCGGATACACCACAATGAGGAAACGTTGGGAAACTTTGAGTAACGCCCTGTCTGTATCAAACCGCTTTTCTCTGCAGAAAGTTGAACCTCTGTACTGCACTTTTTTCAAAAAAATTAGAAGACCATCTCCAGCCTATGCGTGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTACACAGTCCTCCAAGAAGAAGCTAATGTTTACGGCCGTAGAGGAAGTGTCTTTGGTGCTGAAGATCGATATGTGCGTCTCGCCCTCATAAGGAGCCAAGATGATTTCGATATATTGCTTCACCGACTGAACGAGTTAGTCTCCAAGGAAGATGCACAGCCCCAAATTTATATGAAAAATGTGACAAACCCATCAATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

53.28

Weight (kDa)

6.15

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 37 - 92 1.2e-28 Alliinase EGF-like domain
Alliinase_C PF04864 95 - 456 2.6e-138 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 488
AccII CGCG 2 cut(s) 608, 981
AciI CCGC 6 cut(s) 150, 216, 430, 723, 780, 1114
AclI AACGTT 1 cut(s) 1075
AclWI GGATC 3 cut(s) 253, 293, 306
AcoI YGGCCR 3 cut(s) 809, 880, 1261
AcsI RAATTY 5 cut(s) 760, 775, 1041, 1049, 1392
AcuI CTGAAG 1 cut(s) 1308
AdeI CACNNNGTG 1 cut(s) 955
AfaI GTAC 6 cut(s) 143, 438, 476, 892, 932, 1145
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
AjnI CCWGG 1 cut(s) 36
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 1310, 1372
AlwI GGATC 3 cut(s) 253, 293, 306
Ama87I CYCGRG 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 3 cut(s) 809, 880, 1261
ApeKI GCWGC 4 cut(s) 125, 515, 676, 782
ApoI RAATTY 5 cut(s) 760, 775, 1041, 1049, 1392
AspLEI GCGC 2 cut(s) 529, 610
AspS9I GGNCC 1 cut(s) 770
AsuHPI GGTGA 3 cut(s) 564, 1207, 1340
AsuII TTCGAA 2 cut(s) 657, 1047
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 770
BalI TGGCCA 2 cut(s) 811, 882
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 2 cut(s) 108, 318
BbsI GAAGAC 1 cut(s) 1177
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 137, 502, 663, 794
BccI CCATC 8 cut(s) 182, 197, 510, 659, 686, 734, 1183, 1426
BceAI ACGGC 3 cut(s) 137, 1248, 1276
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 1049
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 1310, 1372
BfaI CTAG 2 cut(s) 353, 579
BfmI CTRYAG 3 cut(s) 48, 516, 1124
BfoI RGCGCY 1 cut(s) 530
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 5 cut(s) 126, 150, 516, 677, 783
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 5 cut(s) 127, 151, 517, 678, 784
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 770
BmiI GGNNCC 3 cut(s) 300, 490, 1322
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 3 cut(s) 315, 376, 1369
BpiI GAAGAC 1 cut(s) 1177
BplI GAGNNNNNCTC 2 cut(s) 1352, 1384
BpmI CTGGAG 2 cut(s) 819, 1164
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 2 cut(s) 657, 1047
BpuEI CTTGAG 2 cut(s) 437, 450
Bsa29I ATCGAT 1 cut(s) 1294
BsaJI CCNNGG 1 cut(s) 1371
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 546, 883
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 1294
BseDI CCNNGG 1 cut(s) 1371
BseGI GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BseLI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 121, 272, 1001
BseNI ACTGG 2 cut(s) 546, 883
BseRI GAGGAG 1 cut(s) 497
BseX3I CGGCCG 1 cut(s) 1261
BseXI GCAGC 4 cut(s) 137, 502, 663, 794
BsgI GTGCAG 1 cut(s) 1132
Bsh1236I CGCG 2 cut(s) 608, 981
Bsh1285I CGRYCG 1 cut(s) 1264
BshFI GGCC 3 cut(s) 811, 882, 1263
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 1294
BsiEI CGRYCG 1 cut(s) 1264
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
BsmAI GTCTC 2 cut(s) 1310, 1372
BsmBI CGTCTC 1 cut(s) 1310
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 3 cut(s) 811, 882, 1263
BsoBI CYCGRG 1 cut(s) 163
Bsp119I TTCGAA 2 cut(s) 657, 1047
Bsp1286I GDGCHC 2 cut(s) 108, 318
Bsp143I GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp68I TCGCGA 1 cut(s) 981
BspACI CCGC 6 cut(s) 150, 216, 430, 723, 780, 1114
BspANI GGCC 3 cut(s) 811, 882, 1263
BspCNI CTCAG 3 cut(s) 120, 271, 1000
BspDI ATCGAT 1 cut(s) 1294
BspFNI CGCG 2 cut(s) 608, 981
BspLI GGNNCC 3 cut(s) 300, 490, 1322
BspMAI CTGCAG 2 cut(s) 520, 1128
BspPI GGATC 3 cut(s) 253, 293, 306
BspT104I TTCGAA 2 cut(s) 657, 1047
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 2 cut(s) 546, 883
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 1371
BssMI GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
BssT1I CCWWGG 1 cut(s) 1371
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 293, 955, 1234
Bst6I CTCTTC 1 cut(s) 1206
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBI TTCGAA 2 cut(s) 657, 1047
BstC8I GCNNGC 2 cut(s) 209, 493
BstDEI CTNAG 8 cut(s) 6, 107, 258, 310, 699, 987, 992, 1428
BstF5I GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BstFNI CGCG 2 cut(s) 608, 981
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 2 cut(s) 529, 610
BstKTI GATC 6 cut(s) 248, 301, 394, 641, 796, 1294
BstMAI GTCTC 2 cut(s) 1310, 1372
BstMBI GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
BstMCI CGRYCG 1 cut(s) 1264
BstMWI GCNNNNNNNGC 5 cut(s) 134, 234, 421, 455, 524
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 3 cut(s) 48, 516, 1124
BstUI CGCG 2 cut(s) 608, 981
BstV1I GCAGC 4 cut(s) 137, 502, 663, 794
BstV2I GAAGAC 1 cut(s) 1177
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 1261
Bsu15I ATCGAT 1 cut(s) 1294
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 3 cut(s) 811, 882, 1263
BsuTUI ATCGAT 1 cut(s) 1294
BtsCI GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BtsI GCAGTG 2 cut(s) 915, 933
BtsIMutI CAGTG 5 cut(s) 104, 876, 915, 933, 951
BtuMI TCGCGA 1 cut(s) 981
Cac8I GCNNGC 2 cut(s) 209, 493
CfoI GCGC 2 cut(s) 529, 610
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 770
ClaI ATCGAT 1 cut(s) 1294
CseI GACGC 1 cut(s) 1292
Csp6I GTAC 6 cut(s) 142, 437, 475, 891, 931, 1144
CviAII CATG 6 cut(s) 89, 170, 332, 395, 853, 884
CviQI GTAC 6 cut(s) 142, 437, 475, 891, 931, 1144
DdeI CTNAG 8 cut(s) 6, 107, 258, 310, 699, 987, 992, 1428
DpnI GATC 6 cut(s) 247, 300, 393, 640, 795, 1293
DpnII GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
DraIII CACNNNGTG 1 cut(s) 955
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 3 cut(s) 809, 880, 1261
EagI CGGCCG 1 cut(s) 1261
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 1261
Eco130I CCWWGG 1 cut(s) 1371
Eco24I GRGCYC 2 cut(s) 108, 318
Eco47I GGWCC 1 cut(s) 770
Eco47III AGCGCT 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 1261
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1308
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 1049
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 1371
EcoT38I GRGCYC 2 cut(s) 108, 318
ErhI CCWWGG 1 cut(s) 1371
Esp3I CGTCTC 1 cut(s) 1310
FaeI CATG 6 cut(s) 92, 173, 335, 398, 856, 887
FaqI GGGAC 1 cut(s) 140
FatI CATG 6 cut(s) 88, 169, 331, 394, 852, 883
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 126, 150, 516, 677, 783
FokI GGATG 6 cut(s) 200, 337, 413, 553, 677, 932
FriOI GRGCYC 2 cut(s) 108, 318
Fsp4HI GCNGC 5 cut(s) 126, 150, 516, 677, 783
FspBI CTAG 2 cut(s) 353, 579
GlaI GCGC 2 cut(s) 528, 609
GluI GCNGC 5 cut(s) 126, 150, 516, 677, 783
GsuI CTGGAG 2 cut(s) 819, 1164
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 3 cut(s) 811, 882, 1263
HapII CCGG 1 cut(s) 492
HgaI GACGC 1 cut(s) 1292
HhaI GCGC 2 cut(s) 529, 610
Hin1II CATG 6 cut(s) 92, 173, 335, 398, 856, 887
Hin6I GCGC 2 cut(s) 527, 608
HinP1I GCGC 2 cut(s) 527, 608
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 2 cut(s) 278, 946
HpaII CCGG 1 cut(s) 492
HphI GGTGA 3 cut(s) 564, 1207, 1340
Hpy166II GTNNAC 3 cut(s) 439, 931, 1258
Hpy188I TCNGA 5 cut(s) 250, 340, 391, 638, 1055
Hpy188III TCNNGA 3 cut(s) 200, 737, 980
Hpy8I GTNNAC 3 cut(s) 439, 931, 1258
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 114, 653, 1019
HpyCH4III ACNGT 3 cut(s) 293, 955, 1234
HpyCH4IV ACGT 3 cut(s) 27, 144, 1075
HpyCH4V TGCA 8 cut(s) 228, 328, 347, 458, 518, 1126, 1149, 1382
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 234, 421, 455, 524
HpyF3I CTNAG 8 cut(s) 6, 107, 258, 310, 699, 987, 992, 1428
HpySE526I ACGT 3 cut(s) 27, 144, 1075
Hsp92II CATG 6 cut(s) 92, 173, 335, 398, 856, 887
HspAI GCGC 2 cut(s) 527, 608
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
LmnI GCTCC 4 cut(s) 26, 103, 114, 1320
Lsp1109I GCAGC 4 cut(s) 137, 502, 663, 794
LweI GCATC 3 cut(s) 315, 376, 1369
MaeI CTAG 2 cut(s) 353, 579
MaeII ACGT 3 cut(s) 27, 144, 1075
MaeIII GTNAC 5 cut(s) 460, 718, 962, 1091, 1408
MalI GATC 6 cut(s) 247, 300, 393, 640, 795, 1293
MboI GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
MboII GAAGA 6 cut(s) 143, 1182, 1223, 1256, 1301, 1388
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 108, 318
MlsI TGGCCA 2 cut(s) 811, 882
MluNI TGGCCA 2 cut(s) 811, 882
MmeI TCCRAC 2 cut(s) 92, 854
Mox20I TGGCCA 2 cut(s) 811, 882
MroNI GCCGGC 1 cut(s) 491
MscI TGGCCA 2 cut(s) 811, 882
MseI TTAA 2 cut(s) 266, 522
MslI CAYNNNNRTG 1 cut(s) 1064
Msp20I TGGCCA 2 cut(s) 811, 882
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 608, 981
MwoI GCNNNNNNNGC 5 cut(s) 134, 234, 421, 455, 524
NaeI GCCGGC 1 cut(s) 493
NdeII GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 6 cut(s) 92, 173, 335, 398, 856, 887
NlaIV GGNNCC 3 cut(s) 300, 490, 1322
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 460, 1408
NruI TCGCGA 1 cut(s) 981
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 2 cut(s) 657, 1047
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 677, 1300
PdiI GCCGGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 278, 946
PflFI GACNNNGTC 1 cut(s) 848
PkrI GCNGC 5 cut(s) 127, 151, 517, 678, 784
Psp124BI GAGCTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 1075
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 300, 490, 1322
PspPI GGNCC 1 cut(s) 770
PstI CTGCAG 2 cut(s) 520, 1128
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 848
RruI TCGCGA 1 cut(s) 981
RsaI GTAC 6 cut(s) 143, 438, 476, 892, 932, 1145
RsaNI GTAC 6 cut(s) 142, 437, 475, 891, 931, 1144
RseI CAYNNNNRTG 1 cut(s) 1064
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 266, 522
SatI GCNGC 5 cut(s) 126, 150, 516, 677, 783
Sau3AI GATC 6 cut(s) 245, 298, 391, 638, 793, 1291
Sau96I GGNCC 1 cut(s) 770
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 108, 318
SfaNI GCATC 3 cut(s) 315, 376, 1369
SfcI CTRYAG 3 cut(s) 48, 516, 1124
SfuI TTCGAA 2 cut(s) 657, 1047
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 416, 465
SmoI CTYRAG 2 cut(s) 416, 465
SsiI CCGC 6 cut(s) 150, 216, 430, 723, 780, 1114
SspMI CTAG 2 cut(s) 353, 579
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 1371
TaaI ACNGT 3 cut(s) 293, 955, 1234
TaiI ACGT 3 cut(s) 30, 147, 1078
TaqI TCGA 5 cut(s) 370, 657, 1047, 1294, 1335
TatI WGTACW 2 cut(s) 436, 1143
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 278, 946
Tru1I TTAA 2 cut(s) 266, 522
Tru9I TTAA 2 cut(s) 266, 522
TscAI CASTG 5 cut(s) 104, 883, 915, 933, 958
TseFI GTSAC 2 cut(s) 460, 1408
TseI GCWGC 4 cut(s) 125, 515, 676, 782
Tsp45I GTSAC 2 cut(s) 460, 1408
TspDTI ATGAA 2 cut(s) 630, 1415
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 5 cut(s) 104, 883, 915, 933, 958
Tth111I GACNNNGTC 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 5 cut(s) 760, 775, 1041, 1049, 1392
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 1188
XspI CTAG 2 cut(s) 353, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.