FvH4_6g01700
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014756
Physical Location & Seq
Forward (+)
973635 .. 975716
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01700.t1

Sequence Viewer

Length: 879 bp
ATGGCTTGGTGGGATAGGGATATAGAGCTCATATTCATTCAGTTCAAAGATGTGCCTGCTGCATACTCGGTGGAGCTTGGTTCAAAAGATGAAACGGTGAACGATATCAAAGAGAAGCTAAAGAAGGAATACCCTAATGGTAGACACCTTAAGCCACAAGAAACCCTTGTTTACAAGAATCAAGAACTCAAGGGTGGAGACCTAATCACCGAGTATCATCTTCCCAAGAACACCCTTCTTCATGTAGCTGAGAGGAACGCTGTCGCCGCTCCGACGAGTCCTAAGAATGTCAAAGAGAAAGAGGAAGAAGGTCCTTGGGATTTGGGTGTTGTTCAATCAGTGAAACAAGGGCAACTTCAGCCGGTGGATTTGTTAACAATGGACGAGCCATTTTACAACAACCCTTTTCTCAAGCCTAAAGAGATGAACGTCAACCGAAGTTCTGGTACTCCAGCTCCCAATCTCAATGGTTCGCGTCGAAAAATGGTCGTTGAGGATGAGACGACTAAGCTAAAAAGGTCAGGTTCCTACCTTAAACTTGCTATGGACAATTGTTCTAGCCCTGACCCAGAGTCCAGTGCACCTTCAACCAAAGATAGAATTCGTTGGATACAAGAACTTCATGAAGCTTTTGTTGAAGCTGTCATCCAGCTTGGTGGTAGTGAAAGTGGAAATATAGAACAGCCAGATACATACCGGAGTCATCAGAAGGTAGAACTCCAGAAGCGGCTTTATGAGCAACTTGAGGGTGCTCAAGACTCAAAGCTGCAGTTGCGAATTGAGGAACAAGCAAAGTATCTTGAAATGATGTTTGGGCAAAAAAGGAAGACGGAAGACAACAGTCAACAGGGTCAAGCCGACATCAGCTACCTCAGATGA

Protein Analysis

293

Amino Acids

33.42

Weight (kDa)

5.59

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 238 - 277 4.2e-07 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 142
AccII CGCG 1 cut(s) 475
AciI CCGC 2 cut(s) 267, 727
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 448
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 6 cut(s) 46, 84, 335, 588, 638, 803
AhdI GACNNNNNGTC 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
Alw21I GWGCWC 3 cut(s) 30, 583, 754
Alw26I GTCTC 2 cut(s) 192, 494
Alw44I GTGCAC 1 cut(s) 579
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 2 cut(s) 59, 766
ApoI RAATTY 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 109, 199
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 30
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BbsI GAAGAC 2 cut(s) 833, 840
Bbv12I GWGCWC 3 cut(s) 30, 583, 754
BbvI GCAGC 2 cut(s) 46, 753
BciVI GTATCC 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 192, 494
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 767
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 4 cut(s) 60, 267, 728, 767
BlsI GCNGC 4 cut(s) 61, 268, 729, 768
Bme18I GGWCC 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 526
BoxI GACNNNNGTC 1 cut(s) 840
BpiI GAAGAC 2 cut(s) 833, 840
BpmI CTGGAG 2 cut(s) 435, 704
BpuEI CTTGAG 4 cut(s) 173, 395, 738, 764
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 502, 645
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 2 cut(s) 46, 753
Bsh1236I CGCG 1 cut(s) 475
BsiHKAI GWGCWC 3 cut(s) 30, 583, 754
BsiSI CCGG 2 cut(s) 362, 697
BsmAI GTCTC 2 cut(s) 192, 494
BsmBI CGTCTC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 30, 583, 754
BspACI CCGC 2 cut(s) 267, 727
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 475
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 771
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 97, 842
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 249, 282, 507, 872
BstF5I GGATG 2 cut(s) 502, 645
BstFNI CGCG 1 cut(s) 475
BstMAI GTCTC 2 cut(s) 192, 494
BstMWI GCNNNNNNNGC 4 cut(s) 266, 358, 736, 772
BstPAI GACNNNNGTC 1 cut(s) 840
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 46, 753
BstV2I GAAGAC 2 cut(s) 833, 840
BstXI CCANNNNNNTGG 1 cut(s) 656
BsuI GTATCC 1 cut(s) 603
BtsCI GGATG 2 cut(s) 502, 645
BtsIMutI CAGTG 2 cut(s) 345, 583
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 447
CviAII CATG 2 cut(s) 242, 623
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 4 cut(s) 249, 282, 507, 872
DriI GACNNNNNGTC 1 cut(s) 571
Eam1105I GACNNNNNGTC 1 cut(s) 571
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 600
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 314
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 2 cut(s) 245, 626
FaiI YATR 9 cut(s) 23, 32, 64, 243, 545, 624, 677, 694, 735
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 339, 371
FatI CATG 2 cut(s) 241, 622
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 60, 267, 728, 767
FokI GGATG 2 cut(s) 509, 632
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 60, 267, 728, 767
FspBI CTAG 1 cut(s) 558
GluI GCNGC 4 cut(s) 60, 267, 728, 767
GsuI CTGGAG 2 cut(s) 435, 704
HapII CCGG 2 cut(s) 362, 697
HgaI GACGC 1 cut(s) 464
Hin1II CATG 2 cut(s) 245, 626
HincII GTYRAC 3 cut(s) 375, 433, 845
HindII GTYRAC 3 cut(s) 375, 433, 845
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 5 cut(s) 178, 277, 572, 700, 758
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 2 cut(s) 362, 697
HphI GGTGA 2 cut(s) 109, 199
Hpy166II GTNNAC 7 cut(s) 100, 143, 172, 375, 433, 581, 845
Hpy188I TCNGA 3 cut(s) 273, 708, 875
Hpy188III TCNNGA 5 cut(s) 182, 623, 721, 755, 800
Hpy8I GTNNAC 7 cut(s) 100, 143, 172, 375, 433, 581, 845
Hpy99I CGWCG 2 cut(s) 277, 480
HpyAV CCTTC 5 cut(s) 118, 245, 302, 594, 703
HpyCH4III ACNGT 2 cut(s) 97, 842
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 62, 581, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 358, 736, 772
HpyF3I CTNAG 4 cut(s) 249, 282, 507, 872
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 245, 626
KspAI GTTAAC 1 cut(s) 375
LmnI GCTCC 3 cut(s) 73, 274, 460
Lsp1109I GCAGC 2 cut(s) 46, 753
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 429
MbiI CCGCTC 1 cut(s) 269
MboII GAAGA 5 cut(s) 212, 230, 317, 838, 845
MfeI CAATTG 1 cut(s) 550
MhlI GDGCHC 3 cut(s) 30, 583, 754
MluCI AATT 3 cut(s) 550, 600, 777
MlyI GAGTC 4 cut(s) 286, 581, 709, 752
MmeI TCCRAC 2 cut(s) 296, 587
MnlI CCTC 5 cut(s) 246, 295, 487, 739, 775
MseI TTAA 3 cut(s) 150, 374, 534
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 362, 697
MunI CAATTG 1 cut(s) 550
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 4 cut(s) 266, 358, 736, 772
NlaIII CATG 2 cut(s) 245, 626
NlaIV GGNNCC 1 cut(s) 526
PagI TCATGA 1 cut(s) 622
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 61, 268, 729, 768
PleI GAGTC 4 cut(s) 285, 580, 708, 752
PpsI GAGTC 4 cut(s) 285, 580, 708, 752
PpuMI RGGWCCY 1 cut(s) 311
PshAI GACNNNNGTC 1 cut(s) 840
Psp124BI GAGCTC 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PstI CTGCAG 1 cut(s) 771
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 150, 374, 534
SatI GCNGC 4 cut(s) 60, 267, 728, 767
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 4 cut(s) 286, 581, 709, 752
SduI GDGCHC 3 cut(s) 30, 583, 754
SfcI CTRYAG 1 cut(s) 767
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 5 cut(s) 149, 188, 410, 743, 753
SmoI CTYRAG 5 cut(s) 149, 188, 410, 743, 753
Sse9I AATT 3 cut(s) 550, 600, 777
SsiI CCGC 2 cut(s) 267, 727
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 97, 842
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 478
TasI AATT 3 cut(s) 550, 600, 777
TauI GCSGC 2 cut(s) 269, 730
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 150, 374, 534
Tru9I TTAA 3 cut(s) 150, 374, 534
TscAI CASTG 2 cut(s) 345, 583
TseI GCWGC 2 cut(s) 59, 766
TspDTI ATGAA 6 cut(s) 25, 105, 230, 440, 611, 639
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 2 cut(s) 345, 583
Vha464I CTTAAG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.