Rorug02G0621400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014756
Physical Location & Seq
Reverse (-)
73825188 .. 73827046
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0621400.1

Sequence Viewer

Length: 867 bp
ATGAATCCTGAAGAATCCAAGAAAACCGTCGTTTCAGTCGGACCGTTTGGATCATCGACGTTGGGAGGAAAACCCTTTAATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGAATATTTGGAAGGGAACACAATTGTTAACGTCCGGTTTGAATATGACGACGGCGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGTAAAGATCACTTTGGATCTCTTGTCAGGGCTCTCCGAAGTGCTCTCCGGCAAAAACAAAGTCAGAAGAGAAATAGACAAAGTCAGAAGAGAAACAATTAGATTCAATTATCCAGACGAATTTTTAACTGCAGTTCATGGACGGTATTGTGACAACTTGTTGGGTACCGTATGCGTCGTCAACTCACTTACTTTTAAGACCAATAGAAATACTTACGGACCCTTTGGTTGGACGTCTCAAAATGAAAAACTGATCAACTTATTCCCTTGTTTCTCAATTCATATGCCTGGAAGTGAGATTGTTGGCTTTCATGGCAGATCAGGCCGGAGTAAGTGGTTGGGTGGTATTTATTCAATAGGAGCCTATGTAAAGCCTTATCATCAACAAATTGAATACGCTCCGTCAAAAGCTCTGATCCTTTATCCATCAGAACCTCCACGTATACCTGAATTTCTTTCTCAAACCAAGCTCAATAAAGATGACAGACCTCAAAACCATAAACATTATGCAGTTTCAAATATTCAAGTTAGCAGAAATGAGGGAGATCACAACGGAGCTTTCCATTTGGGCGACATATTTGCAAACTGTTATGTCAACCAAACAAGAGTCTTCAATCCAGATAAAGTAGGGCTAGATAAAGATCTCGGTTACGCCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.26

Weight (kDa)

8.53

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 97 - 190 1.1e-16 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 440
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 646
AciI CCGC 1 cut(s) 171
AclWI GGATC 3 cut(s) 58, 228, 613
AcsI RAATTY 2 cut(s) 323, 653
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 432
AgsI TTSAA 7 cut(s) 158, 310, 558, 596, 720, 728, 817
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 614, 673, 761
AluI AGCT 3 cut(s) 614, 673, 761
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 3 cut(s) 58, 228, 613
AoxI GGCC 1 cut(s) 526
ApoI RAATTY 2 cut(s) 323, 653
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp718I GGTACC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 41, 422
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 2 cut(s) 41, 422
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 805
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 2 cut(s) 77, 637
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 2 cut(s) 41, 422
BmgT120I GGNCC 2 cut(s) 41, 422
BmiI GGNNCC 3 cut(s) 370, 424, 565
BmrFI CCNGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 437
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMII CTCAG 2 cut(s) 108, 192
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 3 cut(s) 151, 252, 529
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsnI GGCC 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 237, 249
Bsp143I GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 107, 191
BspLI GGNNCC 3 cut(s) 370, 424, 565
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 3 cut(s) 58, 228, 613
BspT107I GGYRCC 1 cut(s) 368
BssMI GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
BssNAI GTATAC 1 cut(s) 647
BssNI GRCGYC 1 cut(s) 437
Bst1107I GTATAC 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 5 cut(s) 28, 45, 348, 373, 791
Bst6I CTCTTC 2 cut(s) 265, 286
BstACI GRCGYC 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 94, 178
BstKTI GATC 8 cut(s) 53, 213, 223, 459, 524, 621, 751, 847
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
BstMWI GCNNNNNNNGC 2 cut(s) 516, 525
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 805
BstX2I RGATCY 2 cut(s) 220, 844
BstYI RGATCY 2 cut(s) 220, 844
BstZ17I GTATAC 1 cut(s) 647
BsuRI GGCC 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 41, 422
CpoI CGGWCCG 1 cut(s) 41
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 369
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 3 cut(s) 197, 341, 515
CviJI RGCY 9 cut(s) 235, 510, 528, 566, 577, 614, 673, 761, 835
CviKI_1 RGCY 9 cut(s) 235, 510, 528, 566, 577, 614, 673, 761, 835
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 94, 178
DpnI GATC 8 cut(s) 52, 212, 222, 458, 523, 620, 750, 846
DpnII GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
Eam1104I CTCTTC 2 cut(s) 265, 286
EarI CTCTTC 2 cut(s) 265, 286
EciI GGCGGA 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 41, 422
Eco57I CTGAAG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 200, 344, 518
FatI CATG 3 cut(s) 196, 340, 514
FauNDI CATATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 646
FriOI GRGCYC 1 cut(s) 237
FspBI CTAG 1 cut(s) 836
HaeIII GGCC 1 cut(s) 528
HapII CCGG 3 cut(s) 151, 252, 529
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 3 cut(s) 200, 344, 518
HincII GTYRAC 3 cut(s) 145, 385, 799
HindII GTYRAC 3 cut(s) 145, 385, 799
HinfI GANTC 5 cut(s) 4, 14, 174, 306, 810
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 3 cut(s) 151, 252, 529
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 145, 385, 647, 799
Hpy188I TCNGA 7 cut(s) 41, 190, 241, 269, 290, 618, 634
Hpy188III TCNNGA 3 cut(s) 8, 317, 821
Hpy8I GTNNAC 4 cut(s) 145, 385, 647, 799
Hpy99I CGWCG 4 cut(s) 32, 61, 170, 383
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 5 cut(s) 28, 45, 348, 373, 791
HpyCH4IV ACGT 4 cut(s) 59, 147, 437, 643
HpyCH4V TGCA 3 cut(s) 335, 713, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 525
HpyF3I CTNAG 2 cut(s) 94, 178
HpySE526I ACGT 4 cut(s) 59, 147, 437, 643
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 3 cut(s) 200, 344, 518
KpnI GGTACC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
LmnI GCTCC 3 cut(s) 563, 607, 758
MaeI CTAG 1 cut(s) 836
MaeII ACGT 4 cut(s) 59, 147, 437, 643
MaeIII GTNAC 2 cut(s) 353, 851
MalI GATC 8 cut(s) 52, 212, 222, 458, 523, 620, 750, 846
MboI GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
MboII GAAGA 4 cut(s) 23, 282, 303, 805
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 220, 844
MhlI GDGCHC 2 cut(s) 237, 249
MluCI AATT 7 cut(s) 138, 300, 310, 323, 480, 591, 653
MlyI GAGTC 1 cut(s) 819
MmeI TCCRAC 2 cut(s) 19, 413
MnlI CCTC 4 cut(s) 59, 648, 702, 736
MseI TTAA 4 cut(s) 78, 144, 329, 399
MspI CCGG 3 cut(s) 151, 252, 529
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 516, 525
NdeI CATATG 1 cut(s) 486
NdeII GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
NlaIII CATG 3 cut(s) 200, 344, 518
NlaIV GGNNCC 3 cut(s) 370, 424, 565
NmuCI GTSAC 1 cut(s) 353
PfeI GAWTC 4 cut(s) 4, 14, 174, 306
PflFI GACNNNGTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
Ppu21I YACGTR 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 3 cut(s) 370, 424, 565
PspPI GGNCC 2 cut(s) 41, 422
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 2 cut(s) 220, 844
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 4 cut(s) 78, 144, 329, 399
Sau3AI GATC 8 cut(s) 50, 210, 220, 456, 521, 618, 748, 844
Sau96I GGNCC 2 cut(s) 41, 422
SchI GAGTC 1 cut(s) 819
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 2 cut(s) 237, 249
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 41, 422
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 7 cut(s) 138, 300, 310, 323, 480, 591, 653
SsiI CCGC 1 cut(s) 171
SspI AATATT 2 cut(s) 122, 724
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 5 cut(s) 28, 45, 348, 373, 791
TaiI ACGT 4 cut(s) 62, 150, 440, 646
TaqI TCGA 1 cut(s) 56
TasI AATT 7 cut(s) 138, 300, 310, 323, 480, 591, 653
TfiI GAWTC 4 cut(s) 4, 14, 174, 306
Tru1I TTAA 4 cut(s) 78, 144, 329, 399
Tru9I TTAA 4 cut(s) 78, 144, 329, 399
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 17, 329, 462, 473, 503
TspGWI ACGGA 3 cut(s) 435, 594, 771
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 41, 422
XapI RAATTY 2 cut(s) 323, 653
XmiI GTMKAC 1 cut(s) 646
XspI CTAG 1 cut(s) 836
ZraI GACGTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.