Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014756

Physical Location & Seq

Genomic Coordinates Reverse (-)

48541968 .. 48542948

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATTTGGATAGGGATATAGAACTTATATTCATTCAATTTAAAGATGTGCCTTTCTCGTACTCTGTGGAACTGGGTTCAACAGATGAAACGGTGAACGATATCAAAGAAAAGCTAAGGAAGGAATATCCGAATGGTAGACACCTTAAGCCCCATGAAACCCTTGTTTACAAGAATCAAGAACTGAAGGATGGACACCTATTGGCCGACTATCATCTCCCCAAGAACACCCTCCTGTATGTAGCTGAGAGGAACACTAATCCCTCGAGTCCTGAGAACCTCAAAGAGAAAGAGGAAGAGCCTAGTGTTCCGTCGAGTCCTAAGAACCTCGAAGAGAAAGACCTCAAAGAGAAAGAGGAAGGGCCTTGGGATTTGGGTGTCATTCAATCAGTGAAACACAAGCAACTTCTGCCATTGGATTTATTAACAATGGACGAGCCTTTTTACGACAACCCTTTTATTAAGCCTAAACAGATGCATGTCAACACAAATTCTACAGTTAAGGATGGAACGTCAACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGACGACTAGGGTTTGTGACAAGAGAGCTCGTATGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGAGCATGAGACGGCTAGGGTTGGTGACAAGAAAGCTCGAATGAGCCCCCCACATAATGTAGGTTCCAGTGCCATCGAGATCATTGAGGATGAGACGACTAGGGTTTGCGACAAGAGAGCTCGTATGAGCCCCCCATCTAATGCTGTAGGTTCCAAAGCCATCAAGCTAGGGATAGACGGGTTCTCGCCACGGGCATCTGCAGGGGTTGAAGGTGCCAAGAAGAAGGGTCGGCCTGTGGGAAGTAAAAATAAGAAGACCTATAAGGGACTTGCTTATGAGCAGTTCCCATGGTTACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.56

Weight (kDa)

7.7

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01680 FvH4_6g01700
rosa_laevigata	RLG00000012435 RLG00000025827
rosa_multiflora	Rmu_sc0010766.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427430
rosa_rugosa	Rorug02G0621400 Rorug06G0194500
rosa_samantha	Rh3AG019100 Rh3BG019500 Rh3CG018300 Rh3DG019600 Rh6AG304800 Rh6BG310800 Rh6CG318900 Rh6DG303800
rosa_wichuraiana	Rw3G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	38, 81, 386, 890
AluBI	AGCT	7 cut(s)	115, 245, 542, 629, 716, 800, 847
AluI	AGCT	7 cut(s)	115, 245, 542, 629, 716, 800, 847
Alw21I	GWGCWC	3 cut(s)	544, 631, 802
Alw26I	GTCTC	3 cut(s)	596, 683, 767
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	204, 362, 911
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	106, 716
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	3 cut(s)	544, 631, 802
BccI	CCATC	7 cut(s)	185, 500, 590, 677, 761, 823, 848
BceAI	ACGGC	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	596, 683, 767
BfaI	CTAG	6 cut(s)	303, 522, 609, 696, 780, 848
BfmI	CTRYAG	5 cut(s)	495, 567, 654, 825, 879
BfrI	CTTAAG	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	465, 884
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	365, 869, 968
Bse1I	ACTGG	2 cut(s)	78, 747
BseDI	CCNNGG	3 cut(s)	365, 869, 968
BseGI	GGATG	3 cut(s)	196, 511, 775
BseMII	CTCAG	2 cut(s)	237, 264
BseNI	ACTGG	2 cut(s)	78, 747
BshFI	GGCC	3 cut(s)	206, 364, 913
BshNI	GGYRCC	1 cut(s)	893
BsiHKAI	GWGCWC	3 cut(s)	544, 631, 802
BsiHKCI	CYCGRG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	960
BsmAI	GTCTC	3 cut(s)	596, 683, 767
BsmBI	CGTCTC	3 cut(s)	596, 683, 767
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	3 cut(s)	206, 364, 913
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
Bsp143I	GATC	3 cut(s)	588, 675, 759
Bsp19I	CCATGG	1 cut(s)	968
BspANI	GGCC	3 cut(s)	206, 364, 913
BspCNI	CTCAG	2 cut(s)	238, 265
BspLI	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
BspMAI	CTGCAG	1 cut(s)	883
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	893
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	78, 747
BssECI	CCNNGG	3 cut(s)	365, 869, 968
BssMI	GATC	3 cut(s)	588, 675, 759
BssT1I	CCWWGG	2 cut(s)	365, 968
Bst4CI	ACNGT	3 cut(s)	94, 499, 978
Bst6I	CTCTTC	2 cut(s)	291, 327
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	116, 246, 273, 321
BstDSI	CCRYGG	2 cut(s)	869, 968
BstF5I	GGATG	3 cut(s)	196, 511, 775
BstKTI	GATC	3 cut(s)	591, 678, 762
BstMAI	GTCTC	3 cut(s)	596, 683, 767
BstMBI	GATC	3 cut(s)	588, 675, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	482
BstSFI	CTRYAG	5 cut(s)	495, 567, 654, 825, 879
BstV2I	GAAGAC	1 cut(s)	941
BsuRI	GGCC	3 cut(s)	206, 364, 913
BtgI	CCRYGG	2 cut(s)	869, 968
BtsCI	GGATG	3 cut(s)	196, 511, 775
BtsIMutI	CAGTG	2 cut(s)	396, 754
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	155, 479, 599, 686, 969
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	116, 246, 273, 321
DpnI	GATC	3 cut(s)	590, 677, 761
DpnII	GATC	3 cut(s)	588, 675, 759
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	291, 327
EarI	CTCTTC	2 cut(s)	291, 327
Ecl136II	GAGCTC	3 cut(s)	542, 629, 800
Eco130I	CCWWGG	2 cut(s)	365, 968
Eco24I	GRGCYC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	3 cut(s)	542, 629, 800
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	3 cut(s)	542, 629, 800
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	365, 968
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
ErhI	CCWWGG	2 cut(s)	365, 968
Esp3I	CGTCTC	3 cut(s)	596, 683, 767
FaeI	CATG	5 cut(s)	158, 482, 602, 689, 972
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	5 cut(s)	154, 478, 598, 685, 968
FblI	GTMKAC	1 cut(s)	139
FokI	GGATG	3 cut(s)	203, 518, 782
FriOI	GRGCYC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
FspBI	CTAG	6 cut(s)	303, 522, 609, 696, 780, 848
HaeIII	GGCC	3 cut(s)	206, 364, 913
Hin1II	CATG	5 cut(s)	158, 482, 602, 689, 972
HincII	GTYRAC	2 cut(s)	484, 516
HindII	GTYRAC	2 cut(s)	484, 516
HinfI	GANTC	3 cut(s)	175, 268, 316
HphI	GGTGA	2 cut(s)	106, 716
Hpy166II	GTNNAC	5 cut(s)	97, 140, 169, 484, 516
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	5 cut(s)	179, 272, 586, 673, 757
Hpy8I	GTNNAC	5 cut(s)	97, 140, 169, 484, 516
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	115, 181, 353, 884, 898
HpyCH4III	ACNGT	3 cut(s)	94, 499, 978
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	2 cut(s)	478, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	4 cut(s)	116, 246, 273, 321
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	158, 482, 602, 689, 972
Kzo9I	GATC	3 cut(s)	588, 675, 759
LguI	GCTCTTC	1 cut(s)	291
LpnPI	CCDG	6 cut(s)	59, 248, 285, 760, 867, 927
LweI	GCATC	2 cut(s)	465, 884
MaeI	CTAG	6 cut(s)	303, 522, 609, 696, 780, 848
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	4 cut(s)	530, 617, 704, 972
MalI	GATC	3 cut(s)	590, 677, 761
MboI	GATC	3 cut(s)	588, 675, 759
MboII	GAAGA	4 cut(s)	308, 344, 913, 946
MhlI	GDGCHC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
MluCI	AATT	2 cut(s)	38, 490
MlyI	GAGTC	2 cut(s)	277, 325
MnlI	CCTC	9 cut(s)	242, 243, 274, 286, 290, 338, 349, 353, 760
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	5 cut(s)	42, 147, 425, 462, 501
MspCI	CTTAAG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	968
NdeII	GATC	3 cut(s)	588, 675, 759
NlaIII	CATG	5 cut(s)	158, 482, 602, 689, 972
NlaIV	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
NmuCI	GTSAC	3 cut(s)	530, 617, 704
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	276, 324
PpsI	GAGTC	2 cut(s)	276, 324
Psp124BI	GAGCTC	3 cut(s)	544, 631, 802
PspN4I	GGNNCC	5 cut(s)	574, 661, 745, 832, 895
PspPI	GGNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	883
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	3 cut(s)	544, 631, 802
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	42, 147, 425, 462, 501
Sau3AI	GATC	3 cut(s)	588, 675, 759
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	277, 325
SduI	GDGCHC	7 cut(s)	544, 554, 631, 641, 728, 802, 812
SfaNI	GCATC	2 cut(s)	465, 884
SfcI	CTRYAG	5 cut(s)	495, 567, 654, 825, 879
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	146, 265
SmoI	CTYRAG	2 cut(s)	146, 265
Sse9I	AATT	2 cut(s)	38, 490
SspMI	CTAG	6 cut(s)	303, 522, 609, 696, 780, 848
SstI	GAGCTC	3 cut(s)	544, 631, 802
StyI	CCWWGG	2 cut(s)	365, 968
TaaI	ACNGT	3 cut(s)	94, 499, 978
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	7 cut(s)	266, 314, 330, 585, 672, 718, 756
TasI	AATT	2 cut(s)	38, 490
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	5 cut(s)	42, 147, 425, 462, 501
Tru9I	TTAA	5 cut(s)	42, 147, 425, 462, 501
TscAI	CASTG	2 cut(s)	396, 754
TseFI	GTSAC	3 cut(s)	530, 617, 704
Tsp45I	GTSAC	3 cut(s)	530, 617, 704
TspDTI	ATGAA	3 cut(s)	22, 102, 171
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	396, 754
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	490
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	6 cut(s)	303, 522, 609, 696, 780, 848
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.