mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04740 |
| fragaria_vesca | FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 |
| malus_domestica | MD04G1224900.v1.1 MD12G1241600.v1.1 |
| prunus_persica | Prupe.6G343600_v2.0.a1 |
| pyrus_communis | pycom04g19810 pycom12g22110 |
| rosa_chinensis | RchiOBHm_Chr3g0451091 |
| rosa_laevigata | RLG00000025691 |
| rosa_multiflora | Rmu_co8423931.1_g000001 Rmu_ssc0000461.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00428560 |
| rosa_rugosa | Rorug02G0631200 Rorug02G0631300 |
| rosa_samantha | Rh3AG034200 Rh3BG034500 Rh3CG033200 Rh3DG034200 |
| rosa_wichuraiana | Rw3G002480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 671 |
| AarI | CACCTGC | 1 cut(s) | 4412 |
| Acc36I | ACCTGC | 4 cut(s) | 651, 1603, 3703, 4412 |
| AccB1I | GGYRCC | 3 cut(s) | 112, 210, 609 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1100 |
| AccI | GTMKAC | 2 cut(s) | 972, 4846 |
| AccII | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| AccIII | TCCGGA | 1 cut(s) | 1654 |
| AclI | AACGTT | 1 cut(s) | 1224 |
| AcoI | YGGCCR | 3 cut(s) | 1402, 3925, 4136 |
| AcsI | RAATTY | 8 cut(s) | 575, 1115, 1200, 1822, 4219, 4642, 4827, 4931 |
| AcuI | CTGAAG | 6 cut(s) | 2619, 2763, 2859, 3116, 3642, 4086 |
| AcyI | GRCGYC | 1 cut(s) | 113 |
| AdeI | CACNNNGTG | 2 cut(s) | 440, 4418 |
| AfeI | AGCGCT | 1 cut(s) | 1870 |
| AflII | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| AflIII | ACRYGT | 3 cut(s) | 275, 1348, 4849 |
| AjiI | CACGTC | 2 cut(s) | 3877, 4850 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1603, 1635 |
| AleI | CACNNNNGTG | 1 cut(s) | 41 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 53, 85 |
| Alw21I | GWGCWC | 7 cut(s) | 90, 123, 340, 881, 1670, 2590, 4636 |
| Alw44I | GTGCAC | 1 cut(s) | 2586 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2597, 2720, 2904, 3923 |
| Ama87I | CYCGRG | 1 cut(s) | 1922 |
| Aor13HI | TCCGGA | 1 cut(s) | 1654 |
| Aor51HI | AGCGCT | 1 cut(s) | 1870 |
| ApaLI | GTGCAC | 1 cut(s) | 2586 |
| ApoI | RAATTY | 8 cut(s) | 575, 1115, 1200, 1822, 4219, 4642, 4827, 4931 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 3310, 4354, 4748 |
| AspLEI | GCGC | 7 cut(s) | 56, 115, 180, 720, 1871, 2149, 5301 |
| AsuC2I | CCSGG | 3 cut(s) | 1426, 3116, 4239 |
| AsuHPI | GGTGA | 9 cut(s) | 58, 665, 1228, 1909, 2375, 3044, 4404, 4997, 5246 |
| AsuII | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| AvaI | CYCGRG | 1 cut(s) | 1922 |
| BaeGI | GKGCMC | 4 cut(s) | 612, 1338, 2590, 5477 |
| BamHI | GGATCC | 1 cut(s) | 2198 |
| BanI | GGYRCC | 3 cut(s) | 112, 210, 609 |
| BanII | GRGCYC | 6 cut(s) | 90, 123, 1670, 2231, 2953, 4391 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 807, 839, 3133, 3165 |
| BauI | CACGAG | 1 cut(s) | 3699 |
| BbsI | GAAGAC | 3 cut(s) | 1184, 1406, 1895 |
| Bbv12I | GWGCWC | 7 cut(s) | 90, 123, 340, 881, 1670, 2590, 4636 |
| BbvCI | CCTCAGC | 1 cut(s) | 687 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1437, 1471 |
| BciVI | GTATCC | 2 cut(s) | 621, 4375 |
| BclI | TGATCA | 1 cut(s) | 2314 |
| BcnI | CCSGG | 3 cut(s) | 1426, 3116, 4239 |
| BfmI | CTRYAG | 6 cut(s) | 360, 732, 1494, 1596, 3909, 3915 |
| BfoI | RGCGCY | 2 cut(s) | 116, 1872 |
| BfrI | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| BfuAI | ACCTGC | 4 cut(s) | 651, 1603, 3703, 4412 |
| BfuI | GTATCC | 2 cut(s) | 621, 4375 |
| BglII | AGATCT | 3 cut(s) | 1051, 1877, 2432 |
| BlpI | GCTNAGC | 1 cut(s) | 2757 |
| BmcAI | AGTACT | 1 cut(s) | 158 |
| BmeT110I | CYCGRG | 1 cut(s) | 1922 |
| BmgBI | CACGTC | 2 cut(s) | 3877, 4850 |
| BmrI | ACTGGG | 7 cut(s) | 1849, 2457, 2817, 3094, 3833, 5125, 5320 |
| BmuI | ACTGGG | 7 cut(s) | 1849, 2457, 2817, 3094, 3833, 5125, 5320 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5370 |
| BpiI | GAAGAC | 3 cut(s) | 1184, 1406, 1895 |
| BpmI | CTGGAG | 3 cut(s) | 939, 4235, 4344 |
| Bpu10I | CCTNAGC | 2 cut(s) | 687, 2333 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2757 |
| Bpu14I | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| BpuEI | CTTGAG | 5 cut(s) | 270, 1537, 1592, 1745, 4779 |
| BpuMI | CCSGG | 3 cut(s) | 1426, 3116, 4239 |
| BsaAI | YACGTR | 4 cut(s) | 1349, 3989, 4406, 5404 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1772, 2379, 2431, 2631 |
| BsaHI | GRCGYC | 1 cut(s) | 113 |
| BsaI | GGTCTC | 4 cut(s) | 544, 2343, 2488, 4253 |
| BsaWI | WCCGGW | 1 cut(s) | 1654 |
| Bse118I | RCCGGY | 3 cut(s) | 457, 3704, 3761 |
| Bse3DI | GCAATG | 2 cut(s) | 3900, 4115 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1772, 2379, 2431, 2631 |
| BseAI | TCCGGA | 1 cut(s) | 1654 |
| BseJI | GATNNNNATC | 4 cut(s) | 1772, 2379, 2431, 2631 |
| BseMI | GCAATG | 2 cut(s) | 3900, 4115 |
| BseMII | CTCAG | 9 cut(s) | 519, 701, 2263, 2270, 2378, 2771, 3247, 4727, 5015 |
| BseRI | GAGGAG | 3 cut(s) | 77, 4458, 5376 |
| BseSI | GKGCMC | 4 cut(s) | 612, 1338, 2590, 5477 |
| BseYI | CCCAGC | 3 cut(s) | 171, 4575, 4968 |
| BsgI | GTGCAG | 9 cut(s) | 617, 891, 1995, 3681, 3924, 4440, 5205, 5376, 5426 |
| Bsh1236I | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| BshNI | GGYRCC | 3 cut(s) | 112, 210, 609 |
| BsiHKAI | GWGCWC | 7 cut(s) | 90, 123, 340, 881, 1670, 2590, 4636 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1922 |
| BsiSI | CCGG | 8 cut(s) | 116, 458, 1426, 1655, 3115, 3705, 3762, 4239 |
| BsiWI | CGTACG | 1 cut(s) | 2657 |
| BslFI | GGGAC | 9 cut(s) | 907, 1249, 1262, 2445, 3648, 3734, 4271, 4412, 4490 |
| BsmFI | GGGAC | 9 cut(s) | 907, 1249, 1262, 2445, 3648, 3734, 4271, 4412, 4490 |
| BsmI | GAATGC | 2 cut(s) | 1466, 3645 |
| Bso31I | GGTCTC | 4 cut(s) | 544, 2343, 2488, 4253 |
| BsoBI | CYCGRG | 1 cut(s) | 1922 |
| Bsp119I | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| Bsp13I | TCCGGA | 1 cut(s) | 1654 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2757 |
| Bsp19I | CCATGG | 1 cut(s) | 5275 |
| BspCNI | CTCAG | 9 cut(s) | 520, 700, 2262, 2269, 2379, 2770, 3246, 4728, 5014 |
| BspEI | TCCGGA | 1 cut(s) | 1654 |
| BspFNI | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| BspHI | TCATGA | 4 cut(s) | 268, 2620, 2635, 3474 |
| BspMAI | CTGCAG | 6 cut(s) | 364, 736, 1498, 1600, 3913, 3919 |
| BspMI | ACCTGC | 4 cut(s) | 651, 1603, 3703, 4412 |
| BspQI | GCTCTTC | 3 cut(s) | 828, 2044, 2889 |
| BspT104I | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| BspT107I | GGYRCC | 3 cut(s) | 112, 210, 609 |
| BspTI | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| BspTNI | GGTCTC | 4 cut(s) | 544, 2343, 2488, 4253 |
| BsrDI | GCAATG | 2 cut(s) | 3900, 4115 |
| BsrFI | RCCGGY | 3 cut(s) | 457, 3704, 3761 |
| BssAI | RCCGGY | 3 cut(s) | 457, 3704, 3761 |
| BssNAI | GTATAC | 1 cut(s) | 973 |
| BssNI | GRCGYC | 1 cut(s) | 113 |
| BssSI | CACGAG | 1 cut(s) | 3699 |
| BssT1I | CCWWGG | 4 cut(s) | 3155, 4089, 4552, 5275 |
| Bst1107I | GTATAC | 1 cut(s) | 973 |
| Bst2BI | CACGAG | 1 cut(s) | 3699 |
| Bst6I | CTCTTC | 5 cut(s) | 828, 2031, 2044, 2889, 3748 |
| BstACI | GRCGYC | 1 cut(s) | 113 |
| BstAFI | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 181, 2585, 5183 |
| BstBAI | YACGTR | 4 cut(s) | 1349, 3989, 4406, 5404 |
| BstBI | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 5275 |
| BstEII | GGTNACC | 1 cut(s) | 396 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2502, 3714 |
| BstFNI | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| BstH2I | RGCGCY | 2 cut(s) | 116, 1872 |
| BstHHI | GCGC | 7 cut(s) | 56, 115, 180, 720, 1871, 2149, 5301 |
| BstNSI | RCATGY | 8 cut(s) | 184, 279, 481, 2927, 3563, 3674, 4042, 4157 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5370 |
| BstPI | GGTNACC | 1 cut(s) | 396 |
| BstSFI | CTRYAG | 6 cut(s) | 360, 732, 1494, 1596, 3909, 3915 |
| BstSLI | GKGCMC | 4 cut(s) | 612, 1338, 2590, 5477 |
| BstSNI | TACGTA | 1 cut(s) | 4406 |
| BstUI | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| BstV2I | GAAGAC | 3 cut(s) | 1184, 1406, 1895 |
| BstX2I | RGATCY | 8 cut(s) | 1051, 1090, 1877, 2198, 2432, 2717, 2827, 3497 |
| BstYI | RGATCY | 8 cut(s) | 1051, 1090, 1877, 2198, 2432, 2717, 2827, 3497 |
| BstZ17I | GTATAC | 1 cut(s) | 973 |
| BsuI | GTATCC | 2 cut(s) | 621, 4375 |
| BtgI | CCRYGG | 2 cut(s) | 57, 5275 |
| BtgZI | GCGATG | 1 cut(s) | 2622 |
| BtrI | CACGTC | 2 cut(s) | 3877, 4850 |
| BtsI | GCAGTG | 6 cut(s) | 369, 554, 2690, 3654, 4788, 5455 |
| BveI | ACCTGC | 4 cut(s) | 651, 1603, 3703, 4412 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2597, 2720, 2904, 3923 |
| CciI | TCATGA | 4 cut(s) | 268, 2620, 2635, 3474 |
| CfoI | GCGC | 7 cut(s) | 56, 115, 180, 720, 1871, 2149, 5301 |
| Cfr10I | RCCGGY | 3 cut(s) | 457, 3704, 3761 |
| Cfr42I | CCGCGG | 1 cut(s) | 60 |
| CsiI | ACCWGGT | 2 cut(s) | 2455, 4414 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3790, 3825 |
| DinI | GGCGCC | 1 cut(s) | 114 |
| DraI | TTTAAA | 3 cut(s) | 1476, 4224, 4641 |
| DraIII | CACNNNGTG | 2 cut(s) | 440, 4418 |
| EaeI | YGGCCR | 3 cut(s) | 1402, 3925, 4136 |
| Eam1104I | CTCTTC | 5 cut(s) | 828, 2031, 2044, 2889, 3748 |
| EarI | CTCTTC | 5 cut(s) | 828, 2031, 2044, 2889, 3748 |
| EciI | GGCGGA | 2 cut(s) | 122, 176 |
| Ecl136II | GAGCTC | 3 cut(s) | 88, 121, 1668 |
| Eco105I | TACGTA | 1 cut(s) | 4406 |
| Eco130I | CCWWGG | 4 cut(s) | 3155, 4089, 4552, 5275 |
| Eco147I | AGGCCT | 1 cut(s) | 1569 |
| Eco24I | GRGCYC | 6 cut(s) | 90, 123, 1670, 2231, 2953, 4391 |
| Eco31I | GGTCTC | 4 cut(s) | 544, 2343, 2488, 4253 |
| Eco32I | GATATC | 2 cut(s) | 1915, 3283 |
| Eco47III | AGCGCT | 1 cut(s) | 1870 |
| Eco53kI | GAGCTC | 3 cut(s) | 88, 121, 1668 |
| Eco57I | CTGAAG | 6 cut(s) | 2619, 2763, 2859, 3116, 3642, 4086 |
| Eco88I | CYCGRG | 1 cut(s) | 1922 |
| Eco91I | GGTNACC | 1 cut(s) | 396 |
| EcoICRI | GAGCTC | 3 cut(s) | 88, 121, 1668 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2502, 3714 |
| EcoO109I | RGGNCCY | 6 cut(s) | 862, 2522, 3662, 3778, 4097, 4504 |
| EcoO65I | GGTNACC | 1 cut(s) | 396 |
| EcoRI | GAATTC | 3 cut(s) | 575, 1115, 4931 |
| EcoRV | GATATC | 2 cut(s) | 1915, 3283 |
| EcoT14I | CCWWGG | 4 cut(s) | 3155, 4089, 4552, 5275 |
| EcoT22I | ATGCAT | 4 cut(s) | 315, 1809, 2056, 3561 |
| EcoT38I | GRGCYC | 6 cut(s) | 90, 123, 1670, 2231, 2953, 4391 |
| EgeI | GGCGCC | 1 cut(s) | 114 |
| EheI | GGCGCC | 1 cut(s) | 114 |
| ErhI | CCWWGG | 4 cut(s) | 3155, 4089, 4552, 5275 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1951, 1983, 2101, 2133, 2980, 3012, 4620, 4652 |
| FaqI | GGGAC | 9 cut(s) | 907, 1249, 1262, 2445, 3648, 3734, 4271, 4412, 4490 |
| FauI | CCCGC | 1 cut(s) | 3652 |
| FauNDI | CATATG | 2 cut(s) | 3005, 5421 |
| FbaI | TGATCA | 1 cut(s) | 2314 |
| FblI | GTMKAC | 2 cut(s) | 972, 4846 |
| FriOI | GRGCYC | 6 cut(s) | 90, 123, 1670, 2231, 2953, 4391 |
| GlaI | GCGC | 7 cut(s) | 55, 114, 179, 719, 1870, 2148, 5300 |
| GsaI | CCCAGC | 3 cut(s) | 175, 4579, 4972 |
| GsuI | CTGGAG | 3 cut(s) | 939, 4235, 4344 |
| HaeII | RGCGCY | 2 cut(s) | 116, 1872 |
| HapII | CCGG | 8 cut(s) | 116, 458, 1426, 1655, 3115, 3705, 3762, 4239 |
| HhaI | GCGC | 7 cut(s) | 56, 115, 180, 720, 1871, 2149, 5301 |
| Hin1I | GRCGYC | 1 cut(s) | 113 |
| Hin6I | GCGC | 7 cut(s) | 54, 113, 178, 718, 1869, 2147, 5299 |
| HinP1I | GCGC | 7 cut(s) | 54, 113, 178, 718, 1869, 2147, 5299 |
| HincII | GTYRAC | 5 cut(s) | 1792, 2787, 4036, 4282, 4847 |
| HindII | GTYRAC | 5 cut(s) | 1792, 2787, 4036, 4282, 4847 |
| HindIII | AAGCTT | 2 cut(s) | 330, 1828 |
| HpaI | GTTAAC | 2 cut(s) | 1792, 4282 |
| HpaII | CCGG | 8 cut(s) | 116, 458, 1426, 1655, 3115, 3705, 3762, 4239 |
| HphI | GGTGA | 9 cut(s) | 58, 665, 1228, 1909, 2375, 3044, 4404, 4997, 5246 |
| Hpy99I | CGWCG | 2 cut(s) | 43, 4851 |
| Hsp92I | GRCGYC | 1 cut(s) | 113 |
| HspAI | GCGC | 7 cut(s) | 54, 113, 178, 718, 1869, 2147, 5299 |
| KasI | GGCGCC | 1 cut(s) | 112 |
| KflI | GGGWCCC | 2 cut(s) | 3662, 4504 |
| Kpn2I | TCCGGA | 1 cut(s) | 1654 |
| KroI | GCCGGC | 1 cut(s) | 457 |
| KroNI | GCCGGC | 1 cut(s) | 459 |
| Ksp22I | TGATCA | 1 cut(s) | 2314 |
| KspAI | GTTAAC | 2 cut(s) | 1792, 4282 |
| KspI | CCGCGG | 1 cut(s) | 60 |
| LguI | GCTCTTC | 3 cut(s) | 828, 2044, 2889 |
| MabI | ACCWGGT | 2 cut(s) | 2455, 4414 |
| MaeIII | GTNAC | 8 cut(s) | 396, 1600, 2566, 3209, 3764, 4068, 4832, 5248 |
| MfeI | CAATTG | 1 cut(s) | 1938 |
| MflI | RGATCY | 8 cut(s) | 1051, 1090, 1877, 2198, 2432, 2717, 2827, 3497 |
| Mly113I | GGCGCC | 1 cut(s) | 113 |
| MlyI | GAGTC | 6 cut(s) | 74, 274, 2566, 3191, 3465, 5128 |
| MmeI | TCCRAC | 6 cut(s) | 1437, 2552, 3037, 3618, 4087, 4660 |
| Mph1103I | ATGCAT | 4 cut(s) | 315, 1809, 2056, 3561 |
| MroI | TCCGGA | 1 cut(s) | 1654 |
| MroNI | GCCGGC | 1 cut(s) | 457 |
| MroXI | GAANNNNTTC | 3 cut(s) | 3310, 4354, 4748 |
| MslI | CAYNNNNRTG | 6 cut(s) | 41, 482, 1018, 1812, 2193, 5169 |
| MspCI | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| MspI | CCGG | 8 cut(s) | 116, 458, 1426, 1655, 3115, 3705, 3762, 4239 |
| MunI | CAATTG | 1 cut(s) | 1938 |
| Mva1269I | GAATGC | 2 cut(s) | 1466, 3645 |
| MvnI | CGCG | 5 cut(s) | 54, 59, 4881, 5011, 5301 |
| NaeI | GCCGGC | 1 cut(s) | 459 |
| NarI | GGCGCC | 1 cut(s) | 113 |
| NciI | CCSGG | 3 cut(s) | 1426, 3116, 4239 |
| NcoI | CCATGG | 1 cut(s) | 5275 |
| NdeI | CATATG | 2 cut(s) | 3005, 5421 |
| NgoMIV | GCCGGC | 1 cut(s) | 457 |
| NmeAIII | GCCGAG | 1 cut(s) | 3953 |
| NmuCI | GTSAC | 1 cut(s) | 4832 |
| NsiI | ATGCAT | 4 cut(s) | 315, 1809, 2056, 3561 |
| NspI | RCATGY | 8 cut(s) | 184, 279, 481, 2927, 3563, 3674, 4042, 4157 |
| NspV | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| OliI | CACNNNNGTG | 1 cut(s) | 41 |
| PaeI | GCATGC | 3 cut(s) | 184, 2927, 3674 |
| PagI | TCATGA | 4 cut(s) | 268, 2620, 2635, 3474 |
| PaqCI | CACCTGC | 1 cut(s) | 4412 |
| PasI | CCCWGGG | 3 cut(s) | 3316, 3775, 4391 |
| PceI | AGGCCT | 1 cut(s) | 1569 |
| PciI | ACATGT | 1 cut(s) | 275 |
| PciSI | GCTCTTC | 3 cut(s) | 828, 2044, 2889 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 74, 3697 |
| PctI | GAATGC | 2 cut(s) | 1466, 3645 |
| PdiI | GCCGGC | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 3 cut(s) | 3310, 4354, 4748 |
| Pfl23II | CGTACG | 1 cut(s) | 2657 |
| PflFI | GACNNNGTC | 1 cut(s) | 800 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1100 |
| PfoI | TCCNGGA | 3 cut(s) | 1042, 1424, 3114 |
| PleI | GAGTC | 6 cut(s) | 73, 273, 2566, 3191, 3465, 5128 |
| PluTI | GGCGCC | 1 cut(s) | 116 |
| PpsI | GAGTC | 6 cut(s) | 73, 273, 2566, 3191, 3465, 5128 |
| Ppu21I | YACGTR | 4 cut(s) | 1349, 3989, 4406, 5404 |
| PpuMI | RGGWCCY | 3 cut(s) | 862, 3662, 4504 |
| PscI | ACATGT | 1 cut(s) | 275 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5370 |
| PsiI | TTATAA | 1 cut(s) | 671 |
| Psp124BI | GAGCTC | 3 cut(s) | 90, 123, 1670 |
| Psp1406I | AACGTT | 1 cut(s) | 1224 |
| Psp5II | RGGWCCY | 3 cut(s) | 862, 3662, 4504 |
| PspEI | GGTNACC | 1 cut(s) | 396 |
| PspFI | CCCAGC | 3 cut(s) | 171, 4575, 4968 |
| PspLI | CGTACG | 1 cut(s) | 2657 |
| PspPPI | RGGWCCY | 3 cut(s) | 862, 3662, 4504 |
| PstI | CTGCAG | 6 cut(s) | 364, 736, 1498, 1600, 3913, 3919 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2597, 2720, 2904, 3923 |
| PsuI | RGATCY | 8 cut(s) | 1051, 1090, 1877, 2198, 2432, 2717, 2827, 3497 |
| PsyI | GACNNNGTC | 1 cut(s) | 800 |
| PvuII | CAGCTG | 6 cut(s) | 3683, 3908, 3914, 3920, 4255, 4579 |
| RseI | CAYNNNNRTG | 6 cut(s) | 41, 482, 1018, 1812, 2193, 5169 |
| SacI | GAGCTC | 3 cut(s) | 90, 123, 1670 |
| SacII | CCGCGG | 1 cut(s) | 60 |
| SalI | GTCGAC | 1 cut(s) | 4845 |
| SapI | GCTCTTC | 3 cut(s) | 828, 2044, 2889 |
| ScaI | AGTACT | 1 cut(s) | 158 |
| SchI | GAGTC | 6 cut(s) | 74, 274, 2566, 3191, 3465, 5128 |
| SexAI | ACCWGGT | 2 cut(s) | 2455, 4414 |
| SfcI | CTRYAG | 6 cut(s) | 360, 732, 1494, 1596, 3909, 3915 |
| SfoI | GGCGCC | 1 cut(s) | 114 |
| Sfr303I | CCGCGG | 1 cut(s) | 60 |
| SfuI | TTCGAA | 4 cut(s) | 1906, 2650, 2801, 2999 |
| SgrBI | CCGCGG | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 41, 482, 1018, 1812, 2193, 5169 |
| SmlI | CTYRAG | 8 cut(s) | 152, 285, 805, 1516, 1571, 1724, 4544, 4794 |
| SmoI | CTYRAG | 8 cut(s) | 152, 285, 805, 1516, 1571, 1724, 4544, 4794 |
| SnaBI | TACGTA | 1 cut(s) | 4406 |
| SphI | GCATGC | 3 cut(s) | 184, 2927, 3674 |
| SseBI | AGGCCT | 1 cut(s) | 1569 |
| SspDI | GGCGCC | 1 cut(s) | 112 |
| SspI | AATATT | 1 cut(s) | 236 |
| SstI | GAGCTC | 3 cut(s) | 90, 123, 1670 |
| StuI | AGGCCT | 1 cut(s) | 1569 |
| StyI | CCWWGG | 4 cut(s) | 3155, 4089, 4552, 5275 |
| TatI | WGTACW | 6 cut(s) | 156, 814, 2990, 3149, 3551, 4975 |
| TauI | GCSGC | 3 cut(s) | 59, 1407, 5177 |
| TseFI | GTSAC | 1 cut(s) | 4832 |
| Tsp45I | GTSAC | 1 cut(s) | 4832 |
| TspGWI | ACGGA | 7 cut(s) | 146, 213, 947, 1786, 1925, 3630, 3736 |
| Tth111I | GACNNNGTC | 1 cut(s) | 800 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1100 |
| Vha464I | CTTAAG | 3 cut(s) | 152, 805, 4544 |
| VneI | GTGCAC | 1 cut(s) | 2586 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2502, 3714 |
| XapI | RAATTY | 8 cut(s) | 575, 1115, 1200, 1822, 4219, 4642, 4827, 4931 |
| XbaI | TCTAGA | 1 cut(s) | 3598 |
| XceI | RCATGY | 8 cut(s) | 184, 279, 481, 2927, 3563, 3674, 4042, 4157 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2121, 4169 |
| XmiI | GTMKAC | 2 cut(s) | 972, 4846 |
| XmnI | GAANNNNTTC | 3 cut(s) | 3310, 4354, 4748 |
| ZrmI | AGTACT | 1 cut(s) | 158 |
| Zsp2I | ATGCAT | 4 cut(s) | 315, 1809, 2056, 3561 |