mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04740 |
| fragaria_vesca | FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 |
| malus_domestica | MD04G1224900.v1.1 MD12G1241600.v1.1 |
| prunus_persica | Prupe.6G343600_v2.0.a1 |
| pyrus_communis | pycom04g19810 pycom12g22110 |
| rosa_chinensis | RchiOBHm_Chr3g0451091 |
| rosa_laevigata | RLG00000025691 |
| rosa_multiflora | Rmu_co8423931.1_g000001 Rmu_ssc0000461.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00428560 |
| rosa_rugosa | Rorug02G0631200 Rorug02G0631300 |
| rosa_samantha | Rh3AG034200 Rh3BG034500 Rh3CG033200 Rh3DG034200 |
| rosa_wichuraiana | Rw3G002480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3581 |
| AarI | CACCTGC | 1 cut(s) | 4966 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3447 |
| Acc16I | TGCGCA | 1 cut(s) | 906 |
| Acc36I | ACCTGC | 3 cut(s) | 1545, 3673, 4966 |
| Acc65I | GGTACC | 1 cut(s) | 1661 |
| AccB1I | GGYRCC | 6 cut(s) | 109, 207, 606, 1661, 4592, 4954 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 1097, 2564, 3214, 4049, 4382 |
| AccI | GTMKAC | 5 cut(s) | 943, 1989, 2429, 2781, 4810 |
| AccII | CGCG | 3 cut(s) | 54, 77, 685 |
| AccIII | TCCGGA | 1 cut(s) | 2519 |
| AcoI | YGGCCR | 4 cut(s) | 159, 1875, 2145, 3883 |
| AcyI | GRCGYC | 3 cut(s) | 5, 110, 688 |
| AflIII | ACRYGT | 3 cut(s) | 1345, 2528, 4813 |
| AgeI | ACCGGT | 1 cut(s) | 4151 |
| AhlI | ACTAGT | 1 cut(s) | 3764 |
| AjiI | CACGTC | 1 cut(s) | 4814 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3034, 3066, 4547, 4579 |
| AleI | CACNNNNGTG | 1 cut(s) | 479 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3690, 3722 |
| Alw21I | GWGCWC | 4 cut(s) | 90, 337, 878, 4349 |
| Alw26I | GTCTC | 6 cut(s) | 541, 1266, 2307, 2455, 3795, 3937 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2564, 2871, 4382 |
| Ama87I | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| Aor13HI | TCCGGA | 1 cut(s) | 2519 |
| ApaI | GGGCCC | 2 cut(s) | 3636, 3954 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1982, 2014 |
| AseI | ATTAAT | 1 cut(s) | 4907 |
| AsiGI | ACCGGT | 1 cut(s) | 4151 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4312, 4709 |
| Asp718I | GGTACC | 1 cut(s) | 1661 |
| AspLEI | GCGC | 8 cut(s) | 56, 79, 112, 717, 907, 2104, 2625, 4002 |
| AsuC2I | CCSGG | 4 cut(s) | 2407, 2425, 3686, 3687 |
| AsuII | TTCGAA | 2 cut(s) | 2980, 3139 |
| AvaI | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| AvaII | GGWCC | 9 cut(s) | 115, 217, 662, 1043, 2472, 2504, 3691, 3893, 4379 |
| BaeGI | GKGCMC | 4 cut(s) | 609, 3636, 3954, 4597 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 537, 570, 2099, 2132, 2529, 2562, 3120, 3153 |
| BalI | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| BanI | GGYRCC | 6 cut(s) | 109, 207, 606, 1661, 4592, 4954 |
| BanII | GRGCYC | 4 cut(s) | 90, 3636, 3954, 4349 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 804, 836, 2209, 2241, 3100, 3132 |
| BauI | CACGAG | 1 cut(s) | 3669 |
| BbsI | GAAGAC | 2 cut(s) | 1058, 1907 |
| Bbv12I | GWGCWC | 4 cut(s) | 90, 337, 878, 4349 |
| BbvCI | CCTCAGC | 1 cut(s) | 2724 |
| BciVI | GTATCC | 5 cut(s) | 618, 2557, 3544, 3954, 4333 |
| BclI | TGATCA | 2 cut(s) | 2278, 2862 |
| BcnI | CCSGG | 4 cut(s) | 2407, 2425, 3686, 3687 |
| BcoDI | GTCTC | 6 cut(s) | 541, 1266, 2307, 2455, 3795, 3937 |
| BcuI | ACTAGT | 1 cut(s) | 3764 |
| BfmI | CTRYAG | 6 cut(s) | 320, 1052, 1593, 3627, 3828, 4773 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BfuAI | ACCTGC | 3 cut(s) | 1545, 3673, 4966 |
| BfuI | GTATCC | 5 cut(s) | 618, 2557, 3544, 3954, 4333 |
| BlpI | GCTNAGC | 1 cut(s) | 4348 |
| BmcAI | AGTACT | 2 cut(s) | 155, 4695 |
| Bme18I | GGWCC | 9 cut(s) | 115, 217, 662, 1043, 2472, 2504, 3691, 3893, 4379 |
| BmeT110I | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| BmgBI | CACGTC | 1 cut(s) | 4814 |
| BmrI | ACTGGG | 3 cut(s) | 3806, 4191, 4927 |
| BmuI | ACTGGG | 3 cut(s) | 3806, 4191, 4927 |
| BpiI | GAAGAC | 2 cut(s) | 1058, 1907 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3693, 3725, 4488, 4520 |
| BpmI | CTGGAG | 5 cut(s) | 1338, 2027, 2586, 3717, 4302 |
| Bpu10I | CCTNAGC | 2 cut(s) | 182, 2724 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4348 |
| Bpu14I | TTCGAA | 2 cut(s) | 2980, 3139 |
| BpuEI | CTTGAG | 6 cut(s) | 267, 1534, 1589, 3363, 4490, 4648 |
| BpuMI | CCSGG | 4 cut(s) | 2407, 2425, 3686, 3687 |
| Bsa29I | ATCGAT | 1 cut(s) | 5017 |
| BsaAI | YACGTR | 2 cut(s) | 1346, 3947 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1784, 2346, 3965 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 110, 688 |
| BsaI | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsaWI | WCCGGW | 3 cut(s) | 1045, 2519, 4151 |
| Bse118I | RCCGGY | 3 cut(s) | 454, 3782, 4151 |
| Bse3DI | GCAATG | 2 cut(s) | 4266, 4752 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1784, 2346, 3965 |
| BseAI | TCCGGA | 1 cut(s) | 2519 |
| BseCI | ATCGAT | 1 cut(s) | 5017 |
| BseJI | GATNNNNATC | 3 cut(s) | 1784, 2346, 3965 |
| BseMI | GCAATG | 2 cut(s) | 4266, 4752 |
| BseRI | GAGGAG | 4 cut(s) | 3714, 3717, 4419, 4856 |
| BseSI | GKGCMC | 4 cut(s) | 609, 3636, 3954, 4597 |
| BseYI | CCCAGC | 6 cut(s) | 168, 1955, 3731, 3866, 3908, 4209 |
| BsgI | GTGCAG | 2 cut(s) | 1260, 3651 |
| Bsh1236I | CGCG | 3 cut(s) | 54, 77, 685 |
| BshNI | GGYRCC | 6 cut(s) | 109, 207, 606, 1661, 4592, 4954 |
| BshTI | ACCGGT | 1 cut(s) | 4151 |
| BshVI | ATCGAT | 1 cut(s) | 5017 |
| BsiHKAI | GWGCWC | 4 cut(s) | 90, 337, 878, 4349 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| BslFI | GGGAC | 6 cut(s) | 203, 335, 904, 2061, 3677, 4373 |
| BsmAI | GTCTC | 6 cut(s) | 541, 1266, 2307, 2455, 3795, 3937 |
| BsmFI | GGGAC | 6 cut(s) | 203, 335, 904, 2061, 3677, 4373 |
| BsmI | GAATGC | 2 cut(s) | 1495, 3615 |
| Bso31I | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsoBI | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| Bsp119I | TTCGAA | 2 cut(s) | 2980, 3139 |
| Bsp120I | GGGCCC | 2 cut(s) | 3632, 3950 |
| Bsp1286I | GDGCHC | 8 cut(s) | 90, 337, 609, 878, 3636, 3954, 4349, 4597 |
| Bsp13I | TCCGGA | 1 cut(s) | 2519 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4348 |
| Bsp19I | CCATGG | 1 cut(s) | 3856 |
| BspDI | ATCGAT | 1 cut(s) | 5017 |
| BspEI | TCCGGA | 1 cut(s) | 2519 |
| BspFNI | CGCG | 3 cut(s) | 54, 77, 685 |
| BspHI | TCATGA | 2 cut(s) | 265, 744 |
| BspMAI | CTGCAG | 4 cut(s) | 324, 1056, 1597, 3631 |
| BspMI | ACCTGC | 3 cut(s) | 1545, 3673, 4966 |
| BspQI | GCTCTTC | 1 cut(s) | 825 |
| BspT104I | TTCGAA | 2 cut(s) | 2980, 3139 |
| BspT107I | GGYRCC | 6 cut(s) | 109, 207, 606, 1661, 4592, 4954 |
| BspTNI | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsrDI | GCAATG | 2 cut(s) | 4266, 4752 |
| BsrFI | RCCGGY | 3 cut(s) | 454, 3782, 4151 |
| BssAI | RCCGGY | 3 cut(s) | 454, 3782, 4151 |
| BssNI | GRCGYC | 3 cut(s) | 5, 110, 688 |
| BssSI | CACGAG | 1 cut(s) | 3669 |
| BssT1I | CCWWGG | 2 cut(s) | 3122, 3856 |
| Bst2BI | CACGAG | 1 cut(s) | 3669 |
| Bst6I | CTCTTC | 3 cut(s) | 825, 1260, 3718 |
| BstACI | GRCGYC | 3 cut(s) | 5, 110, 688 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 178 |
| BstBAI | YACGTR | 2 cut(s) | 1346, 3947 |
| BstBI | TTCGAA | 2 cut(s) | 2980, 3139 |
| BstDSI | CCRYGG | 1 cut(s) | 3856 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3699, 3828 |
| BstFNI | CGCG | 3 cut(s) | 54, 77, 685 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 8 cut(s) | 56, 79, 112, 717, 907, 2104, 2625, 4002 |
| BstMAI | GTCTC | 6 cut(s) | 541, 1266, 2307, 2455, 3795, 3937 |
| BstNSI | RCATGY | 7 cut(s) | 181, 2532, 2894, 3533, 3644, 4000, 4115 |
| BstSFI | CTRYAG | 6 cut(s) | 320, 1052, 1593, 3627, 3828, 4773 |
| BstSLI | GKGCMC | 4 cut(s) | 609, 3636, 3954, 4597 |
| BstUI | CGCG | 3 cut(s) | 54, 77, 685 |
| BstV2I | GAAGAC | 2 cut(s) | 1058, 1907 |
| BstX2I | RGATCY | 7 cut(s) | 637, 736, 1048, 1087, 1735, 2794, 4370 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2159, 3568, 4289 |
| BstYI | RGATCY | 7 cut(s) | 637, 736, 1048, 1087, 1735, 2794, 4370 |
| Bsu15I | ATCGAT | 1 cut(s) | 5017 |
| BsuI | GTATCC | 5 cut(s) | 618, 2557, 3544, 3954, 4333 |
| BsuTUI | ATCGAT | 1 cut(s) | 5017 |
| BtgI | CCRYGG | 1 cut(s) | 3856 |
| BtrI | CACGTC | 1 cut(s) | 4814 |
| BtsI | GCAGTG | 2 cut(s) | 558, 3624 |
| BtsIMutI | CAGTG | 5 cut(s) | 558, 2271, 2869, 3624, 3914 |
| BveI | ACCTGC | 3 cut(s) | 1545, 3673, 4966 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2564, 2871, 4382 |
| CciI | TCATGA | 2 cut(s) | 265, 744 |
| CfoI | GCGC | 8 cut(s) | 56, 79, 112, 717, 907, 2104, 2625, 4002 |
| Cfr10I | RCCGGY | 3 cut(s) | 454, 3782, 4151 |
| Cfr9I | CCCGGG | 1 cut(s) | 3685 |
| ClaI | ATCGAT | 1 cut(s) | 5017 |
| CseI | GACGC | 3 cut(s) | 677, 851, 4839 |
| CspAI | ACCGGT | 1 cut(s) | 4151 |
| DinI | GGCGCC | 1 cut(s) | 111 |
| DraI | TTTAAA | 7 cut(s) | 1473, 1620, 1702, 1714, 2671, 3355, 4296 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3447 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3447 |
| EaeI | YGGCCR | 4 cut(s) | 159, 1875, 2145, 3883 |
| Eam1104I | CTCTTC | 3 cut(s) | 825, 1260, 3718 |
| EarI | CTCTTC | 3 cut(s) | 825, 1260, 3718 |
| EciI | GGCGGA | 2 cut(s) | 28, 1953 |
| Ecl136II | GAGCTC | 2 cut(s) | 88, 4347 |
| Eco130I | CCWWGG | 2 cut(s) | 3122, 3856 |
| Eco147I | AGGCCT | 1 cut(s) | 1566 |
| Eco24I | GRGCYC | 4 cut(s) | 90, 3636, 3954, 4349 |
| Eco31I | GGTCTC | 2 cut(s) | 2307, 2455 |
| Eco47I | GGWCC | 9 cut(s) | 115, 217, 662, 1043, 2472, 2504, 3691, 3893, 4379 |
| Eco53kI | GAGCTC | 2 cut(s) | 88, 4347 |
| Eco88I | CYCGRG | 3 cut(s) | 3685, 4842, 5005 |
| EcoICRI | GAGCTC | 2 cut(s) | 88, 4347 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3699, 3828 |
| EcoRI | GAATTC | 3 cut(s) | 572, 2982, 4895 |
| EcoT14I | CCWWGG | 2 cut(s) | 3122, 3856 |
| EcoT22I | ATGCAT | 3 cut(s) | 312, 1821, 3531 |
| EcoT38I | GRGCYC | 4 cut(s) | 90, 3636, 3954, 4349 |
| EgeI | GGCGCC | 1 cut(s) | 111 |
| EheI | GGCGCC | 1 cut(s) | 111 |
| ErhI | CCWWGG | 2 cut(s) | 3122, 3856 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 492, 524, 4581, 4613 |
| FaqI | GGGAC | 6 cut(s) | 203, 335, 904, 2061, 3677, 4373 |
| FauI | CCCGC | 1 cut(s) | 4630 |
| FauNDI | CATATG | 1 cut(s) | 2972 |
| FbaI | TGATCA | 2 cut(s) | 2278, 2862 |
| FblI | GTMKAC | 5 cut(s) | 943, 1989, 2429, 2781, 4810 |
| FriOI | GRGCYC | 4 cut(s) | 90, 3636, 3954, 4349 |
| FspI | TGCGCA | 1 cut(s) | 906 |
| GlaI | GCGC | 8 cut(s) | 55, 78, 111, 716, 906, 2103, 2624, 4001 |
| GsaI | CCCAGC | 6 cut(s) | 172, 1959, 3735, 3870, 3912, 4213 |
| GsuI | CTGGAG | 5 cut(s) | 1338, 2027, 2586, 3717, 4302 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HgaI | GACGC | 3 cut(s) | 677, 851, 4839 |
| HhaI | GCGC | 8 cut(s) | 56, 79, 112, 717, 907, 2104, 2625, 4002 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 110, 688 |
| Hin6I | GCGC | 8 cut(s) | 54, 77, 110, 715, 905, 2102, 2623, 4000 |
| HinP1I | GCGC | 8 cut(s) | 54, 77, 110, 715, 905, 2102, 2623, 4000 |
| HincII | GTYRAC | 5 cut(s) | 3994, 4160, 4218, 4240, 4811 |
| HindII | GTYRAC | 5 cut(s) | 3994, 4160, 4218, 4240, 4811 |
| HindIII | AAGCTT | 4 cut(s) | 327, 671, 1510, 2132 |
| HpaI | GTTAAC | 1 cut(s) | 4240 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 4815, 4855 |
| HpyCH4IV | ACGT | 4 cut(s) | 1345, 3152, 3946, 4813 |
| HpySE526I | ACGT | 4 cut(s) | 1345, 3152, 3946, 4813 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 110, 688 |
| HspAI | GCGC | 8 cut(s) | 54, 77, 110, 715, 905, 2102, 2623, 4000 |
| KasI | GGCGCC | 1 cut(s) | 109 |
| KflI | GGGWCCC | 1 cut(s) | 3691 |
| Kpn2I | TCCGGA | 1 cut(s) | 2519 |
| KpnI | GGTACC | 1 cut(s) | 1665 |
| KroI | GCCGGC | 1 cut(s) | 454 |
| KroNI | GCCGGC | 1 cut(s) | 456 |
| Ksp22I | TGATCA | 2 cut(s) | 2278, 2862 |
| KspAI | GTTAAC | 1 cut(s) | 4240 |
| LguI | GCTCTTC | 1 cut(s) | 825 |
| LmnI | GCTCC | 7 cut(s) | 10, 340, 873, 3094, 3587, 4108, 4615 |
| MaeII | ACGT | 4 cut(s) | 1345, 3152, 3946, 4813 |
| MaeIII | GTNAC | 6 cut(s) | 586, 799, 2713, 3203, 4796, 4935 |
| MfeI | CAATTG | 2 cut(s) | 360, 4062 |
| MflI | RGATCY | 7 cut(s) | 637, 736, 1048, 1087, 1735, 2794, 4370 |
| MhlI | GDGCHC | 8 cut(s) | 90, 337, 609, 878, 3636, 3954, 4349, 4597 |
| MlsI | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| MluNI | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| Mly113I | GGCGCC | 1 cut(s) | 110 |
| MlyI | GAGTC | 5 cut(s) | 583, 3158, 3375, 3457, 3615 |
| MmeI | TCCRAC | 3 cut(s) | 2444, 3418, 4285 |
| Mox20I | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| Mph1103I | ATGCAT | 3 cut(s) | 312, 1821, 3531 |
| MroI | TCCGGA | 1 cut(s) | 2519 |
| MroNI | GCCGGC | 1 cut(s) | 454 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4312, 4709 |
| MscI | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| MslI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| Msp20I | TGGCCA | 3 cut(s) | 161, 1877, 2147 |
| MspA1I | CMGCKG | 4 cut(s) | 1496, 2353, 3653, 4213 |
| MssI | GTTTAAAC | 1 cut(s) | 4296 |
| MunI | CAATTG | 2 cut(s) | 360, 4062 |
| Mva1269I | GAATGC | 2 cut(s) | 1495, 3615 |
| MvnI | CGCG | 3 cut(s) | 54, 77, 685 |
| NaeI | GCCGGC | 1 cut(s) | 456 |
| NarI | GGCGCC | 1 cut(s) | 110 |
| NciI | CCSGG | 4 cut(s) | 2407, 2425, 3686, 3687 |
| NcoI | CCATGG | 1 cut(s) | 3856 |
| NdeI | CATATG | 1 cut(s) | 2972 |
| NgoMIV | GCCGGC | 1 cut(s) | 454 |
| NmeAIII | GCCGAG | 3 cut(s) | 85, 1259, 3911 |
| NmuCI | GTSAC | 4 cut(s) | 586, 799, 4796, 4935 |
| NsbI | TGCGCA | 1 cut(s) | 906 |
| NsiI | ATGCAT | 3 cut(s) | 312, 1821, 3531 |
| NspI | RCATGY | 7 cut(s) | 181, 2532, 2894, 3533, 3644, 4000, 4115 |
| NspV | TTCGAA | 2 cut(s) | 2980, 3139 |
| OliI | CACNNNNGTG | 1 cut(s) | 479 |
| PaeI | GCATGC | 2 cut(s) | 181, 2894 |
| PaeR7I | CTCGAG | 1 cut(s) | 5005 |
| PagI | TCATGA | 2 cut(s) | 265, 744 |
| PaqCI | CACCTGC | 1 cut(s) | 4966 |
| PasI | CCCWGGG | 1 cut(s) | 1378 |
| PceI | AGGCCT | 1 cut(s) | 1566 |
| PciI | ACATGT | 1 cut(s) | 2528 |
| PciSI | GCTCTTC | 1 cut(s) | 825 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3667 |
| PctI | GAATGC | 2 cut(s) | 1495, 3615 |
| PdiI | GCCGGC | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4312, 4709 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 1097, 2564, 3214, 4049, 4382 |
| PinAI | ACCGGT | 1 cut(s) | 4151 |
| PleI | GAGTC | 5 cut(s) | 583, 3158, 3374, 3456, 3615 |
| PluTI | GGCGCC | 1 cut(s) | 113 |
| PmeI | GTTTAAAC | 1 cut(s) | 4296 |
| PpsI | GAGTC | 5 cut(s) | 583, 3158, 3374, 3456, 3615 |
| Ppu21I | YACGTR | 2 cut(s) | 1346, 3947 |
| PpuMI | RGGWCCY | 3 cut(s) | 217, 3691, 4379 |
| PscI | ACATGT | 1 cut(s) | 2528 |
| PshBI | ATTAAT | 1 cut(s) | 4907 |
| PsiI | TTATAA | 1 cut(s) | 3581 |
| Psp124BI | GAGCTC | 2 cut(s) | 90, 4349 |
| Psp5II | RGGWCCY | 3 cut(s) | 217, 3691, 4379 |
| PspFI | CCCAGC | 6 cut(s) | 168, 1955, 3731, 3866, 3908, 4209 |
| PspOMI | GGGCCC | 2 cut(s) | 3632, 3950 |
| PspPPI | RGGWCCY | 3 cut(s) | 217, 3691, 4379 |
| PspXI | VCTCGAGB | 1 cut(s) | 5005 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 991, 1023 |
| PstI | CTGCAG | 4 cut(s) | 324, 1056, 1597, 3631 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2564, 2871, 4382 |
| PsuI | RGATCY | 7 cut(s) | 637, 736, 1048, 1087, 1735, 2794, 4370 |
| PvuII | CAGCTG | 4 cut(s) | 1496, 2353, 3653, 4213 |
| RseI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| SacI | GAGCTC | 2 cut(s) | 90, 4349 |
| SalI | GTCGAC | 1 cut(s) | 4809 |
| SapI | GCTCTTC | 1 cut(s) | 825 |
| ScaI | AGTACT | 2 cut(s) | 155, 4695 |
| SchI | GAGTC | 5 cut(s) | 583, 3158, 3375, 3457, 3615 |
| SduI | GDGCHC | 8 cut(s) | 90, 337, 609, 878, 3636, 3954, 4349, 4597 |
| SfcI | CTRYAG | 6 cut(s) | 320, 1052, 1593, 3627, 3828, 4773 |
| SfoI | GGCGCC | 1 cut(s) | 111 |
| Sfr274I | CTCGAG | 1 cut(s) | 5005 |
| SfuI | TTCGAA | 2 cut(s) | 2980, 3139 |
| SgrAI | CRCCGGYG | 1 cut(s) | 4151 |
| SinI | GGWCC | 9 cut(s) | 115, 217, 662, 1043, 2472, 2504, 3691, 3893, 4379 |
| SlaI | CTCGAG | 1 cut(s) | 5005 |
| SmaI | CCCGGG | 1 cut(s) | 3687 |
| SmiI | ATTTAAAT | 1 cut(s) | 1714 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| SmlI | CTYRAG | 7 cut(s) | 282, 1513, 1568, 3378, 4505, 4627, 5005 |
| SmoI | CTYRAG | 7 cut(s) | 282, 1513, 1568, 3378, 4505, 4627, 5005 |
| SpeI | ACTAGT | 1 cut(s) | 3764 |
| SphI | GCATGC | 2 cut(s) | 181, 2894 |
| SseBI | AGGCCT | 1 cut(s) | 1566 |
| SspDI | GGCGCC | 1 cut(s) | 109 |
| SspI | AATATT | 3 cut(s) | 1429, 2587, 5042 |
| SstI | GAGCTC | 2 cut(s) | 90, 4349 |
| StuI | AGGCCT | 1 cut(s) | 1566 |
| StyI | CCWWGG | 2 cut(s) | 3122, 3856 |
| SwaI | ATTTAAAT | 1 cut(s) | 1714 |
| TaiI | ACGT | 4 cut(s) | 1348, 3155, 3949, 4816 |
| TatI | WGTACW | 6 cut(s) | 153, 811, 2957, 3116, 3521, 4693 |
| TauI | GCSGC | 5 cut(s) | 54, 59, 110, 688, 2918 |
| TscAI | CASTG | 5 cut(s) | 558, 2271, 2876, 3631, 3921 |
| TseFI | GTSAC | 4 cut(s) | 586, 799, 4796, 4935 |
| Tsp45I | GTSAC | 4 cut(s) | 586, 799, 4796, 4935 |
| TspGWI | ACGGA | 4 cut(s) | 729, 1011, 1728, 3979 |
| TspMI | CCCGGG | 1 cut(s) | 3685 |
| TspRI | CASTG | 5 cut(s) | 558, 2271, 2876, 3631, 3921 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 1097, 2564, 3214, 4049, 4382 |
| VpaK11BI | GGWCC | 9 cut(s) | 115, 217, 662, 1043, 2472, 2504, 3691, 3893, 4379 |
| VspI | ATTAAT | 1 cut(s) | 4907 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3699, 3828 |
| XceI | RCATGY | 7 cut(s) | 181, 2532, 2894, 3533, 3644, 4000, 4115 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3863, 4127 |
| XhoI | CTCGAG | 1 cut(s) | 5005 |
| XmaI | CCCGGG | 1 cut(s) | 3685 |
| XmiI | GTMKAC | 5 cut(s) | 943, 1989, 2429, 2781, 4810 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4312, 4709 |
| ZrmI | AGTACT | 2 cut(s) | 155, 4695 |
| Zsp2I | ATGCAT | 3 cut(s) | 312, 1821, 3531 |