Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8423931.1

Orthogroup ID

OG0009239

Physical Location & Seq

Genomic Coordinates Reverse (-)

479 .. 1423

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8423931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgacaattctctcttctgtcccaaaacaggccgggtacataccatcccagggccttatgcaaaccagttcaaccacaaacgttagtcagtctcctgtccctgttgggaactctgtttcatctgctgctacaggtcctcttacaaatcacggccttcacggggctgcaatgttagctgctgctgctggccgaggtggacctggcattgtacctagctcactgttgcccattgatgtttctgttgtgctgcgtggtccatactggatacgaattatatatcggaagcactttgcagttgacatgcgatgttttgcaggagatcaggtctggttacaaccagcaacgccaccaaaggggggcccttcagttggaggttctttgccttgcccacaatttcggccatttattatggagcatgtggcccaagaattgaatggtttagatactaatttcaatggtgttcaacagacgggattggcaaatttacacactcaaaacctcagtgcaggtccccagctgtctgctgtcaatggaaatagggttaacctccctagttctgctgcactgtctaggacaggcaatcaagtagctagtttgaaccgcgctggaaatgcttctccagtatcctcgaatttggctgtcatgagctcagggatgcctttacgtagatcaccaggtgcaggtgtccctgctcatgtgagaggagaactgaatacagccattattggtcttggagatgatggggggtatggaggtggttgggtcccccttgttgctcttaaaaaggtgctgagaggtattctcaagtaccttggagtgctgtggctatttgcccagctgcccgatcttttgaaagagattctagggtccattttgaaagacaatgaaggtgcactattaaatttggaccaggagcagcctgctttgcgtttctttgtggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008284 GO:0009266 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009631 GO:0009814 GO:0016591 GO:0016592 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0042127 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045087 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055029 GO:0055044 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0090575 GO:0098542 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med14

Protein Analysis

314

Amino Acids

32.66

Weight (kDa)

9.69

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04740
fragaria_vesca	FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 FvH4_6g02880
malus_domestica	MD04G1224900.v1.1 MD12G1241600.v1.1
prunus_persica	Prupe.6G343600_v2.0.a1
pyrus_communis	pycom04g19810 pycom12g22110
rosa_chinensis	RchiOBHm_Chr3g0451091
rosa_laevigata	RLG00000025691
rosa_multiflora	Rmu_co8423931.1_g000001 Rmu_ssc0000461.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428560
rosa_rugosa	Rorug02G0631200 Rorug02G0631300
rosa_samantha	Rh3AG034200 Rh3BG034500 Rh3CG033200 Rh3DG034200
rosa_wichuraiana	Rw3G002480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	2 cut(s)	497, 671
AccII	CGCG	1 cut(s)	603
AciI	CCGC	1 cut(s)	601
AclI	AACGTT	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	187, 398
AcsI	RAATTY	3 cut(s)	481, 631, 901
AcuI	CTGAAG	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	3 cut(s)	38, 210, 809
AfiI	CCNNNNNNNGG	7 cut(s)	28, 50, 160, 353, 356, 368, 680
AgsI	TTSAA	7 cut(s)	72, 433, 454, 464, 598, 853, 877
AjnI	CCWGG	4 cut(s)	48, 199, 673, 909
AluBI	AGCT	6 cut(s)	176, 216, 517, 590, 648, 838
AluI	AGCT	6 cut(s)	176, 216, 517, 590, 648, 838
Alw21I	GWGCWC	2 cut(s)	650, 895
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	891
AoxI	GGCC	7 cut(s)	30, 52, 151, 187, 358, 398, 420
ApaI	GGGCCC	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	891
ApeKI	GCWGC	9 cut(s)	125, 164, 176, 179, 182, 247, 560, 838, 916
ApoI	RAATTY	3 cut(s)	481, 631, 901
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	663
AvaII	GGWCC	7 cut(s)	134, 197, 254, 509, 763, 867, 907
BaeGI	GKGCMC	2 cut(s)	362, 895
BanII	GRGCYC	2 cut(s)	362, 650
Bbv12I	GWGCWC	2 cut(s)	650, 895
BbvI	GCAGC	9 cut(s)	112, 151, 163, 166, 169, 234, 547, 825, 928
BccI	CCATC	2 cut(s)	52, 734
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	4 cut(s)	50, 201, 675, 911
BciVI	GTATCC	2 cut(s)	258, 634
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	5 cut(s)	213, 552, 570, 591, 863
BfmI	CTRYAG	1 cut(s)	129
BfuAI	ACCTGC	2 cut(s)	497, 671
BfuI	GTATCC	2 cut(s)	258, 634
BisI	GCNGC	9 cut(s)	126, 165, 177, 180, 183, 248, 561, 839, 917
BlsI	GCNGC	9 cut(s)	127, 166, 178, 181, 184, 249, 562, 840, 918
Bme1390I	CCNGG	5 cut(s)	34, 50, 201, 675, 911
Bme18I	GGWCC	7 cut(s)	134, 197, 254, 509, 763, 867, 907
BmiI	GGNNCC	6 cut(s)	359, 360, 511, 764, 765, 868
BmrFI	CCNGG	5 cut(s)	34, 50, 201, 675, 911
BmsI	GCATC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	786, 818
BpmI	CTGGAG	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	48, 49, 190, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 50, 160, 353, 356, 368, 680
Bse1I	ACTGG	3 cut(s)	66, 266, 620
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	4 cut(s)	50, 201, 675, 911
BseDI	CCNNGG	4 cut(s)	48, 49, 190, 811
BseGI	GGATG	2 cut(s)	44, 660
BseLI	CCNNNNNNNGG	7 cut(s)	28, 50, 160, 353, 356, 368, 680
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	514, 663, 782
BseNI	ACTGG	3 cut(s)	66, 266, 620
BseRI	GAGGAG	1 cut(s)	717
BseSI	GKGCMC	2 cut(s)	362, 895
BseXI	GCAGC	9 cut(s)	112, 151, 163, 166, 169, 234, 547, 825, 928
BseYI	CCCAGC	2 cut(s)	513, 834
BsgI	GTGCAG	3 cut(s)	525, 546, 699
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	7 cut(s)	32, 54, 153, 189, 360, 400, 422
BsiHKAI	GWGCWC	2 cut(s)	650, 895
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	5 cut(s)	5, 83, 495, 671, 749
BslI	CCNNNNNNNGG	7 cut(s)	28, 50, 160, 353, 356, 368, 680
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	5 cut(s)	5, 83, 495, 671, 749
BsnI	GGCC	7 cut(s)	32, 54, 153, 189, 360, 400, 422
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	3 cut(s)	362, 650, 895
Bsp143I	GATC	3 cut(s)	319, 668, 844
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	7 cut(s)	32, 54, 153, 189, 360, 400, 422
BspCNI	CTCAG	3 cut(s)	513, 662, 783
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	6 cut(s)	359, 360, 511, 764, 765, 868
BspMI	ACCTGC	2 cut(s)	497, 671
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	66, 266, 620
BssECI	CCNNGG	4 cut(s)	48, 49, 190, 811
BssMI	GATC	3 cut(s)	319, 668, 844
BssT1I	CCWWGG	1 cut(s)	811
Bst2UI	CCWGG	4 cut(s)	50, 201, 675, 911
Bst4CI	ACNGT	2 cut(s)	222, 567
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	187, 921
BstDEI	CTNAG	3 cut(s)	500, 649, 791
BstF5I	GGATG	2 cut(s)	44, 660
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	3 cut(s)	322, 671, 847
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	319, 668, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 611, 925
BstNI	CCWGG	4 cut(s)	50, 201, 675, 911
BstNSI	RCATGY	2 cut(s)	304, 419
BstSCI	CCNGG	5 cut(s)	32, 48, 199, 673, 909
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	2 cut(s)	362, 895
BstSNI	TACGTA	1 cut(s)	665
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	9 cut(s)	112, 151, 163, 166, 169, 234, 547, 825, 928
BsuI	GTATCC	2 cut(s)	258, 634
BsuRI	GGCC	7 cut(s)	32, 54, 153, 189, 360, 400, 422
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	44, 660
BtsIMutI	CAGTG	3 cut(s)	218, 508, 563
BveI	ACCTGC	2 cut(s)	497, 671
Cac8I	GCNNGC	2 cut(s)	187, 921
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	605
CsiI	ACCWGGT	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	37, 209, 808
CviAII	CATG	4 cut(s)	301, 416, 643, 695
CviQI	GTAC	3 cut(s)	37, 209, 808
DdeI	CTNAG	3 cut(s)	500, 649, 791
DpnI	GATC	3 cut(s)	321, 670, 846
DpnII	GATC	3 cut(s)	319, 668, 844
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	2 cut(s)	187, 398
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	648
Eco105I	TACGTA	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	811
Eco24I	GRGCYC	2 cut(s)	362, 650
Eco47I	GGWCC	7 cut(s)	134, 197, 254, 509, 763, 867, 907
Eco53kI	GAGCTC	1 cut(s)	648
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	648
EcoO109I	RGGNCCY	6 cut(s)	52, 134, 358, 359, 509, 763
EcoRII	CCWGG	4 cut(s)	48, 199, 673, 909
EcoT14I	CCWWGG	1 cut(s)	811
EcoT38I	GRGCYC	2 cut(s)	362, 650
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	4 cut(s)	304, 419, 646, 698
FaqI	GGGAC	5 cut(s)	5, 83, 495, 671, 749
FatI	CATG	4 cut(s)	300, 415, 642, 694
Fnu4HI	GCNGC	9 cut(s)	126, 165, 177, 180, 183, 248, 561, 839, 917
FokI	GGATG	2 cut(s)	31, 667
FriOI	GRGCYC	2 cut(s)	362, 650
Fsp4HI	GCNGC	9 cut(s)	126, 165, 177, 180, 183, 248, 561, 839, 917
FspBI	CTAG	5 cut(s)	213, 552, 570, 591, 863
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	9 cut(s)	126, 165, 177, 180, 183, 248, 561, 839, 917
GsaI	CCCAGC	2 cut(s)	517, 838
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	7 cut(s)	32, 54, 153, 189, 360, 400, 422
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	4 cut(s)	304, 419, 646, 698
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	2 cut(s)	298, 544
HindII	GTYRAC	2 cut(s)	298, 544
HinfI	GANTC	1 cut(s)	859
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	663
Hpy166II	GTNNAC	4 cut(s)	197, 298, 544, 893
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	4 cut(s)	197, 298, 544, 893
HpyAV	CCTTC	3 cut(s)	164, 372, 881
HpyCH4III	ACNGT	2 cut(s)	222, 567
HpyCH4IV	ACGT	2 cut(s)	81, 664
HpyCH4V	TGCA	8 cut(s)	61, 167, 293, 314, 506, 563, 680, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 611, 925
HpyF3I	CTNAG	3 cut(s)	500, 649, 791
HpySE526I	ACGT	2 cut(s)	81, 664
Hsp92II	CATG	4 cut(s)	304, 419, 646, 698
HspAI	GCGC	1 cut(s)	603
KflI	GGGWCCC	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	319, 668, 844
LmnI	GCTCC	2 cut(s)	412, 913
Lsp1109I	GCAGC	9 cut(s)	112, 151, 163, 166, 169, 234, 547, 825, 928
LweI	GCATC	1 cut(s)	645
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	5 cut(s)	213, 552, 570, 591, 863
MaeII	ACGT	2 cut(s)	81, 664
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	3 cut(s)	321, 670, 846
MboI	GATC	3 cut(s)	319, 668, 844
MboII	GAAGA	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	362, 650, 895
MluCI	AATT	8 cut(s)	6, 270, 392, 428, 448, 481, 631, 901
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	9 cut(s)	147, 185, 365, 509, 557, 637, 695, 746, 788
MroXI	GAANNNNTTC	1 cut(s)	613
MseI	TTAA	3 cut(s)	543, 780, 899
MspA1I	CMGCKG	2 cut(s)	517, 838
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	5 cut(s)	34, 50, 201, 675, 911
MvaI	CCWGG	4 cut(s)	50, 201, 675, 911
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 611, 925
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	319, 668, 844
NlaIII	CATG	4 cut(s)	304, 419, 646, 698
NlaIV	GGNNCC	6 cut(s)	359, 360, 511, 764, 765, 868
NmeAIII	GCCGAG	1 cut(s)	215
NspI	RCATGY	2 cut(s)	304, 419
PagI	TCATGA	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	671
PasI	CCCWGGG	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	859
PkrI	GCNGC	9 cut(s)	127, 166, 178, 181, 184, 249, 562, 840, 918
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	3 cut(s)	134, 509, 763
Psp124BI	GAGCTC	1 cut(s)	650
Psp1406I	AACGTT	1 cut(s)	81
Psp5II	RGGWCCY	3 cut(s)	134, 509, 763
Psp6I	CCWGG	4 cut(s)	48, 199, 673, 909
PspFI	CCCAGC	2 cut(s)	513, 834
PspGI	CCWGG	4 cut(s)	48, 199, 673, 909
PspN4I	GGNNCC	6 cut(s)	359, 360, 511, 764, 765, 868
PspOMI	GGGCCC	1 cut(s)	358
PspPPI	RGGWCCY	3 cut(s)	134, 509, 763
PvuII	CAGCTG	2 cut(s)	517, 838
RsaI	GTAC	3 cut(s)	38, 210, 809
RsaNI	GTAC	3 cut(s)	37, 209, 808
SacI	GAGCTC	1 cut(s)	650
SaqAI	TTAA	3 cut(s)	543, 780, 899
SatI	GCNGC	9 cut(s)	126, 165, 177, 180, 183, 248, 561, 839, 917
Sau3AI	GATC	3 cut(s)	319, 668, 844
ScrFI	CCNGG	5 cut(s)	34, 50, 201, 675, 911
SduI	GDGCHC	3 cut(s)	362, 650, 895
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	7 cut(s)	134, 197, 254, 509, 763, 867, 907
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SnaBI	TACGTA	1 cut(s)	665
Sse9I	AATT	8 cut(s)	6, 270, 392, 428, 448, 481, 631, 901
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	5 cut(s)	213, 552, 570, 591, 863
SstI	GAGCTC	1 cut(s)	650
StyD4I	CCNGG	5 cut(s)	32, 48, 199, 673, 909
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	2 cut(s)	222, 567
TaiI	ACGT	2 cut(s)	84, 667
TaqI	TCGA	1 cut(s)	629
TasI	AATT	8 cut(s)	6, 270, 392, 428, 448, 481, 631, 901
TfiI	GAWTC	1 cut(s)	859
Tru1I	TTAA	3 cut(s)	543, 780, 899
Tru9I	TTAA	3 cut(s)	543, 780, 899
TscAI	CASTG	3 cut(s)	225, 508, 570
TseI	GCWGC	9 cut(s)	125, 164, 176, 179, 182, 247, 560, 838, 916
TspDTI	ATGAA	2 cut(s)	108, 900
TspRI	CASTG	3 cut(s)	225, 508, 570
VneI	GTGCAC	1 cut(s)	891
VpaK11BI	GGWCC	7 cut(s)	134, 197, 254, 509, 763, 867, 907
XapI	RAATTY	3 cut(s)	481, 631, 901
XceI	RCATGY	2 cut(s)	304, 419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	5 cut(s)	213, 552, 570, 591, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.