mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04740 |
| fragaria_vesca | FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 FvH4_6g02880 |
| malus_domestica | MD04G1224900.v1.1 MD12G1241600.v1.1 |
| prunus_persica | Prupe.6G343600_v2.0.a1 |
| pyrus_communis | pycom04g19810 pycom12g22110 |
| rosa_chinensis | RchiOBHm_Chr3g0451091 |
| rosa_laevigata | RLG00000025691 |
| rosa_multiflora | Rmu_co8423931.1_g000001 Rmu_ssc0000461.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00428560 |
| rosa_rugosa | Rorug02G0631200 Rorug02G0631300 |
| rosa_samantha | Rh3AG034200 Rh3BG034500 Rh3CG033200 Rh3DG034200 |
| rosa_wichuraiana | Rw3G002480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5067 |
| AarI | CACCTGC | 1 cut(s) | 4972 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 3456, 4180 |
| Acc16I | TGCGCA | 1 cut(s) | 906 |
| Acc36I | ACCTGC | 2 cut(s) | 3682, 4972 |
| AccB1I | GGYRCC | 2 cut(s) | 207, 606 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1097, 4391 |
| AccI | GTMKAC | 5 cut(s) | 943, 2429, 2784, 4226, 5337 |
| AccII | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| AcoI | YGGCCR | 3 cut(s) | 1552, 2145, 3892 |
| AcuI | CTGAAG | 9 cut(s) | 1241, 1397, 1518, 2648, 2733, 2829, 3086, 3621, 4812 |
| AcyI | GRCGYC | 2 cut(s) | 5, 107 |
| AflIII | ACRYGT | 1 cut(s) | 5214 |
| AgeI | ACCGGT | 1 cut(s) | 4160 |
| AhlI | ACTAGT | 1 cut(s) | 3773 |
| AjiI | CACGTC | 1 cut(s) | 415 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 630, 662, 3037, 3069, 4556, 4588 |
| AleI | CACNNNNGTG | 1 cut(s) | 479 |
| Alw21I | GWGCWC | 7 cut(s) | 90, 337, 431, 861, 1667, 4358, 5030 |
| Alw26I | GTCTC | 7 cut(s) | 541, 1266, 2307, 2455, 3804, 3946, 5179 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2874, 4391 |
| Ama87I | CYCGRG | 2 cut(s) | 3694, 5011 |
| ApaI | GGGCCC | 4 cut(s) | 2195, 2475, 3645, 4067 |
| AseI | ATTAAT | 1 cut(s) | 4913 |
| AsiGI | ACCGGT | 1 cut(s) | 4160 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4321, 4718 |
| AspLEI | GCGC | 6 cut(s) | 56, 79, 717, 907, 4011, 5268 |
| AsuC2I | CCSGG | 3 cut(s) | 2407, 3695, 3696 |
| AsuHPI | GGTGA | 7 cut(s) | 58, 598, 662, 1225, 1366, 3014, 4150 |
| AsuII | TTCGAA | 1 cut(s) | 3142 |
| AvaI | CYCGRG | 2 cut(s) | 3694, 5011 |
| AxyI | CCTNAGG | 1 cut(s) | 3384 |
| BaeGI | GKGCMC | 6 cut(s) | 609, 797, 2195, 2475, 3645, 4067 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 537, 570, 2532, 2565 |
| BalI | TGGCCA | 1 cut(s) | 2147 |
| BanI | GGYRCC | 2 cut(s) | 207, 606 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 804, 836, 2209, 2241, 3103, 3135 |
| BauI | CACGAG | 2 cut(s) | 3678, 4848 |
| BbsI | GAAGAC | 6 cut(s) | 417, 1058, 1403, 1893, 1907, 2727 |
| Bbv12I | GWGCWC | 7 cut(s) | 90, 337, 431, 861, 1667, 4358, 5030 |
| BciVI | GTATCC | 4 cut(s) | 618, 2560, 3963, 4342 |
| BclI | TGATCA | 2 cut(s) | 2278, 2865 |
| BcnI | CCSGG | 3 cut(s) | 2407, 3695, 3696 |
| BcoDI | GTCTC | 7 cut(s) | 541, 1266, 2307, 2455, 3804, 3946, 5179 |
| BcuI | ACTAGT | 1 cut(s) | 3773 |
| BfmI | CTRYAG | 8 cut(s) | 320, 729, 1052, 1491, 1593, 3636, 3837, 4779 |
| BfuAI | ACCTGC | 2 cut(s) | 3682, 4972 |
| BfuI | GTATCC | 4 cut(s) | 618, 2560, 3963, 4342 |
| BlpI | GCTNAGC | 1 cut(s) | 4357 |
| BmcAI | AGTACT | 2 cut(s) | 155, 4704 |
| BmeT110I | CYCGRG | 2 cut(s) | 3694, 5011 |
| BmgBI | CACGTC | 1 cut(s) | 415 |
| BmrI | ACTGGG | 4 cut(s) | 1872, 3815, 4200, 5287 |
| BmuI | ACTGGG | 4 cut(s) | 1872, 3815, 4200, 5287 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5343 |
| BpiI | GAAGAC | 6 cut(s) | 417, 1058, 1403, 1893, 1907, 2727 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3702, 3734, 4497, 4529 |
| BpmI | CTGGAG | 2 cut(s) | 1338, 3726 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4357 |
| Bpu14I | TTCGAA | 1 cut(s) | 3142 |
| BpuEI | CTTGAG | 4 cut(s) | 134, 267, 1589, 4499 |
| BpuMI | CCSGG | 3 cut(s) | 2407, 3695, 3696 |
| BsaAI | YACGTR | 3 cut(s) | 3956, 4376, 5377 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1784, 2346, 3974 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 107 |
| BsaI | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsaWI | WCCGGW | 3 cut(s) | 1045, 4160, 4327 |
| Bse118I | RCCGGY | 3 cut(s) | 454, 4160, 4366 |
| Bse21I | CCTNAGG | 1 cut(s) | 3384 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1784, 2346, 3974 |
| BseJI | GATNNNNATC | 3 cut(s) | 1784, 2346, 3974 |
| BseRI | GAGGAG | 2 cut(s) | 3723, 4428 |
| BseSI | GKGCMC | 6 cut(s) | 609, 797, 2195, 2475, 3645, 4067 |
| BseYI | CCCAGC | 5 cut(s) | 168, 3740, 3875, 3917, 4545 |
| BsgI | GTGCAG | 2 cut(s) | 1260, 3660 |
| Bsh1236I | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| BshNI | GGYRCC | 2 cut(s) | 207, 606 |
| BshTI | ACCGGT | 1 cut(s) | 4160 |
| BsiHKAI | GWGCWC | 7 cut(s) | 90, 337, 431, 861, 1667, 4358, 5030 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3694, 5011 |
| BslFI | GGGAC | 7 cut(s) | 203, 904, 1294, 2061, 2421, 3686, 4382 |
| BsmAI | GTCTC | 7 cut(s) | 541, 1266, 2307, 2455, 3804, 3946, 5179 |
| BsmFI | GGGAC | 7 cut(s) | 203, 904, 1294, 2061, 2421, 3686, 4382 |
| BsmI | GAATGC | 1 cut(s) | 3624 |
| Bso31I | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsoBI | CYCGRG | 2 cut(s) | 3694, 5011 |
| Bsp119I | TTCGAA | 1 cut(s) | 3142 |
| Bsp120I | GGGCCC | 4 cut(s) | 2191, 2471, 3641, 4063 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4357 |
| Bsp19I | CCATGG | 1 cut(s) | 5242 |
| BspFNI | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| BspHI | TCATGA | 2 cut(s) | 265, 744 |
| BspMAI | CTGCAG | 5 cut(s) | 324, 1056, 1495, 1597, 3640 |
| BspMI | ACCTGC | 2 cut(s) | 3682, 4972 |
| BspQI | GCTCTTC | 2 cut(s) | 825, 2859 |
| BspT104I | TTCGAA | 1 cut(s) | 3142 |
| BspT107I | GGYRCC | 2 cut(s) | 207, 606 |
| BspTNI | GGTCTC | 2 cut(s) | 2307, 2455 |
| BsrFI | RCCGGY | 3 cut(s) | 454, 4160, 4366 |
| BssAI | RCCGGY | 3 cut(s) | 454, 4160, 4366 |
| BssNAI | GTATAC | 1 cut(s) | 2785 |
| BssNI | GRCGYC | 2 cut(s) | 5, 107 |
| BssSI | CACGAG | 2 cut(s) | 3678, 4848 |
| BssT1I | CCWWGG | 5 cut(s) | 3125, 3286, 4056, 4522, 5242 |
| Bst1107I | GTATAC | 1 cut(s) | 2785 |
| Bst2BI | CACGAG | 2 cut(s) | 3678, 4848 |
| Bst6I | CTCTTC | 4 cut(s) | 825, 1260, 2859, 3727 |
| BstACI | GRCGYC | 2 cut(s) | 5, 107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 178 |
| BstBAI | YACGTR | 3 cut(s) | 3956, 4376, 5377 |
| BstBI | TTCGAA | 1 cut(s) | 3142 |
| BstDSI | CCRYGG | 1 cut(s) | 5242 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1953, 3837 |
| BstFNI | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| BstHHI | GCGC | 6 cut(s) | 56, 79, 717, 907, 4011, 5268 |
| BstMAI | GTCTC | 7 cut(s) | 541, 1266, 2307, 2455, 3804, 3946, 5179 |
| BstNSI | RCATGY | 6 cut(s) | 181, 2897, 3542, 3653, 4009, 4124 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5343 |
| BstSFI | CTRYAG | 8 cut(s) | 320, 729, 1052, 1491, 1593, 3636, 3837, 4779 |
| BstSLI | GKGCMC | 6 cut(s) | 609, 797, 2195, 2475, 3645, 4067 |
| BstSNI | TACGTA | 1 cut(s) | 4376 |
| BstUI | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| BstV2I | GAAGAC | 6 cut(s) | 417, 1058, 1403, 1893, 1907, 2727 |
| BstX2I | RGATCY | 6 cut(s) | 1048, 1087, 1735, 2057, 2797, 4379 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3577, 4298 |
| BstYI | RGATCY | 6 cut(s) | 1048, 1087, 1735, 2057, 2797, 4379 |
| BstZ17I | GTATAC | 1 cut(s) | 2785 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3384 |
| BsuI | GTATCC | 4 cut(s) | 618, 2560, 3963, 4342 |
| BtgI | CCRYGG | 1 cut(s) | 5242 |
| BtrI | CACGTC | 1 cut(s) | 415 |
| BtsI | GCAGTG | 4 cut(s) | 558, 3633, 4758, 5387 |
| BveI | ACCTGC | 2 cut(s) | 3682, 4972 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2874, 4391 |
| CciI | TCATGA | 2 cut(s) | 265, 744 |
| CfoI | GCGC | 6 cut(s) | 56, 79, 717, 907, 4011, 5268 |
| Cfr10I | RCCGGY | 3 cut(s) | 454, 4160, 4366 |
| Cfr9I | CCCGGG | 1 cut(s) | 3694 |
| CseI | GACGC | 1 cut(s) | 96 |
| CspAI | ACCGGT | 1 cut(s) | 4160 |
| DraI | TTTAAA | 7 cut(s) | 1473, 1702, 1714, 1761, 2695, 3358, 4305 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 3456, 4180 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 3456, 4180 |
| EaeI | YGGCCR | 3 cut(s) | 1552, 2145, 3892 |
| Eam1104I | CTCTTC | 4 cut(s) | 825, 1260, 2859, 3727 |
| EarI | CTCTTC | 4 cut(s) | 825, 1260, 2859, 3727 |
| EciI | GGCGGA | 2 cut(s) | 28, 3452 |
| Ecl136II | GAGCTC | 6 cut(s) | 88, 429, 859, 1665, 4356, 5028 |
| Eco105I | TACGTA | 1 cut(s) | 4376 |
| Eco130I | CCWWGG | 5 cut(s) | 3125, 3286, 4056, 4522, 5242 |
| Eco31I | GGTCTC | 2 cut(s) | 2307, 2455 |
| Eco32I | GATATC | 2 cut(s) | 1927, 2109 |
| Eco53kI | GAGCTC | 6 cut(s) | 88, 429, 859, 1665, 4356, 5028 |
| Eco57I | CTGAAG | 9 cut(s) | 1241, 1397, 1518, 2648, 2733, 2829, 3086, 3621, 4812 |
| Eco81I | CCTNAGG | 1 cut(s) | 3384 |
| Eco88I | CYCGRG | 2 cut(s) | 3694, 5011 |
| EcoICRI | GAGCTC | 6 cut(s) | 88, 429, 859, 1665, 4356, 5028 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1953, 3837 |
| EcoRI | GAATTC | 2 cut(s) | 572, 4901 |
| EcoRV | GATATC | 2 cut(s) | 1927, 2109 |
| EcoT14I | CCWWGG | 5 cut(s) | 3125, 3286, 4056, 4522, 5242 |
| EcoT22I | ATGCAT | 6 cut(s) | 312, 1821, 2164, 3010, 3540, 4846 |
| ErhI | CCWWGG | 5 cut(s) | 3125, 3286, 4056, 4522, 5242 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 492, 524, 4590, 4622 |
| FaqI | GGGAC | 7 cut(s) | 203, 904, 1294, 2061, 2421, 3686, 4382 |
| FauI | CCCGC | 2 cut(s) | 1326, 1652 |
| FauNDI | CATATG | 2 cut(s) | 2975, 5394 |
| FbaI | TGATCA | 2 cut(s) | 2278, 2865 |
| FblI | GTMKAC | 5 cut(s) | 943, 2429, 2784, 4226, 5337 |
| FspI | TGCGCA | 1 cut(s) | 906 |
| GlaI | GCGC | 6 cut(s) | 55, 78, 716, 906, 4010, 5267 |
| GsaI | CCCAGC | 5 cut(s) | 172, 3744, 3879, 3921, 4549 |
| GsuI | CTGGAG | 2 cut(s) | 1338, 3726 |
| HgaI | GACGC | 1 cut(s) | 96 |
| HhaI | GCGC | 6 cut(s) | 56, 79, 717, 907, 4011, 5268 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 107 |
| Hin6I | GCGC | 6 cut(s) | 54, 77, 715, 905, 4009, 5266 |
| HinP1I | GCGC | 6 cut(s) | 54, 77, 715, 905, 4009, 5266 |
| HincII | GTYRAC | 4 cut(s) | 1285, 4003, 4169, 4249 |
| HindII | GTYRAC | 4 cut(s) | 1285, 4003, 4169, 4249 |
| HindIII | AAGCTT | 3 cut(s) | 327, 671, 1840 |
| HpaI | GTTAAC | 1 cut(s) | 4249 |
| HphI | GGTGA | 7 cut(s) | 58, 598, 662, 1225, 1366, 3014, 4150 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 112 |
| HpyCH4IV | ACGT | 5 cut(s) | 414, 3955, 4375, 5214, 5376 |
| HpySE526I | ACGT | 5 cut(s) | 414, 3955, 4375, 5214, 5376 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 107 |
| HspAI | GCGC | 6 cut(s) | 54, 77, 715, 905, 4009, 5266 |
| KflI | GGGWCCC | 1 cut(s) | 3700 |
| KroI | GCCGGC | 2 cut(s) | 454, 4366 |
| KroNI | GCCGGC | 2 cut(s) | 456, 4368 |
| Ksp22I | TGATCA | 2 cut(s) | 2278, 2865 |
| KspAI | GTTAAC | 1 cut(s) | 4249 |
| LguI | GCTCTTC | 2 cut(s) | 825, 2859 |
| MaeII | ACGT | 5 cut(s) | 414, 3955, 4375, 5214, 5376 |
| MaeIII | GTNAC | 8 cut(s) | 586, 799, 1172, 2716, 2789, 3541, 4080, 4802 |
| MfeI | CAATTG | 1 cut(s) | 360 |
| MflI | RGATCY | 6 cut(s) | 1048, 1087, 1735, 2057, 2797, 4379 |
| MlsI | TGGCCA | 1 cut(s) | 2147 |
| MluNI | TGGCCA | 1 cut(s) | 2147 |
| MlyI | GAGTC | 6 cut(s) | 583, 889, 3161, 3378, 3466, 3624 |
| MmeI | TCCRAC | 2 cut(s) | 3427, 4294 |
| Mox20I | TGGCCA | 1 cut(s) | 2147 |
| Mph1103I | ATGCAT | 6 cut(s) | 312, 1821, 2164, 3010, 3540, 4846 |
| MroNI | GCCGGC | 2 cut(s) | 454, 4366 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4321, 4718 |
| MscI | TGGCCA | 1 cut(s) | 2147 |
| MslI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| Msp20I | TGGCCA | 1 cut(s) | 2147 |
| MspA1I | CMGCKG | 4 cut(s) | 1496, 2353, 3662, 5144 |
| MssI | GTTTAAAC | 1 cut(s) | 4305 |
| MunI | CAATTG | 1 cut(s) | 360 |
| Mva1269I | GAATGC | 1 cut(s) | 3624 |
| MvnI | CGCG | 4 cut(s) | 54, 77, 685, 5268 |
| NaeI | GCCGGC | 2 cut(s) | 456, 4368 |
| NciI | CCSGG | 3 cut(s) | 2407, 3695, 3696 |
| NcoI | CCATGG | 1 cut(s) | 5242 |
| NdeI | CATATG | 2 cut(s) | 2975, 5394 |
| NgoMIV | GCCGGC | 2 cut(s) | 454, 4366 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 3920 |
| NmuCI | GTSAC | 4 cut(s) | 586, 799, 4080, 4802 |
| NsbI | TGCGCA | 1 cut(s) | 906 |
| NsiI | ATGCAT | 6 cut(s) | 312, 1821, 2164, 3010, 3540, 4846 |
| NspI | RCATGY | 6 cut(s) | 181, 2897, 3542, 3653, 4009, 4124 |
| NspV | TTCGAA | 1 cut(s) | 3142 |
| OliI | CACNNNNGTG | 1 cut(s) | 479 |
| PaeI | GCATGC | 3 cut(s) | 181, 2897, 3653 |
| PaeR7I | CTCGAG | 1 cut(s) | 5011 |
| PagI | TCATGA | 2 cut(s) | 265, 744 |
| PaqCI | CACCTGC | 1 cut(s) | 4972 |
| PasI | CCCWGGG | 1 cut(s) | 1378 |
| PciSI | GCTCTTC | 2 cut(s) | 825, 2859 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3676 |
| PctI | GAATGC | 1 cut(s) | 3624 |
| PdiI | GCCGGC | 2 cut(s) | 456, 4368 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4321, 4718 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1097, 4391 |
| PfoI | TCCNGGA | 2 cut(s) | 3576, 4274 |
| PinAI | ACCGGT | 1 cut(s) | 4160 |
| PleI | GAGTC | 6 cut(s) | 583, 888, 3161, 3377, 3465, 3624 |
| PmeI | GTTTAAAC | 1 cut(s) | 4305 |
| PpsI | GAGTC | 6 cut(s) | 583, 888, 3161, 3377, 3465, 3624 |
| Ppu21I | YACGTR | 3 cut(s) | 3956, 4376, 5377 |
| PpuMI | RGGWCCY | 3 cut(s) | 217, 3700, 4388 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5343 |
| PshBI | ATTAAT | 1 cut(s) | 4913 |
| PsiI | TTATAA | 1 cut(s) | 5067 |
| Psp124BI | GAGCTC | 6 cut(s) | 90, 431, 861, 1667, 4358, 5030 |
| Psp5II | RGGWCCY | 3 cut(s) | 217, 3700, 4388 |
| PspFI | CCCAGC | 5 cut(s) | 168, 3740, 3875, 3917, 4545 |
| PspOMI | GGGCCC | 4 cut(s) | 2191, 2471, 3641, 4063 |
| PspPPI | RGGWCCY | 3 cut(s) | 217, 3700, 4388 |
| PspXI | VCTCGAGB | 1 cut(s) | 5011 |
| PstI | CTGCAG | 5 cut(s) | 324, 1056, 1495, 1597, 3640 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2874, 4391 |
| PsuI | RGATCY | 6 cut(s) | 1048, 1087, 1735, 2057, 2797, 4379 |
| PvuII | CAGCTG | 3 cut(s) | 1496, 2353, 3662 |
| RseI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| SacI | GAGCTC | 6 cut(s) | 90, 431, 861, 1667, 4358, 5030 |
| SapI | GCTCTTC | 2 cut(s) | 825, 2859 |
| ScaI | AGTACT | 2 cut(s) | 155, 4704 |
| SchI | GAGTC | 6 cut(s) | 583, 889, 3161, 3378, 3466, 3624 |
| SfcI | CTRYAG | 8 cut(s) | 320, 729, 1052, 1491, 1593, 3636, 3837, 4779 |
| Sfr274I | CTCGAG | 1 cut(s) | 5011 |
| SfuI | TTCGAA | 1 cut(s) | 3142 |
| SgrAI | CRCCGGYG | 1 cut(s) | 4160 |
| SlaI | CTCGAG | 1 cut(s) | 5011 |
| SmaI | CCCGGG | 1 cut(s) | 3696 |
| SmiI | ATTTAAAT | 1 cut(s) | 1714 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 479, 1824, 2157 |
| SmlI | CTYRAG | 5 cut(s) | 149, 282, 1568, 4514, 5011 |
| SmoI | CTYRAG | 5 cut(s) | 149, 282, 1568, 4514, 5011 |
| SnaBI | TACGTA | 1 cut(s) | 4376 |
| SpeI | ACTAGT | 1 cut(s) | 3773 |
| SphI | GCATGC | 3 cut(s) | 181, 2897, 3653 |
| SspI | AATATT | 2 cut(s) | 1429, 5059 |
| SstI | GAGCTC | 6 cut(s) | 90, 431, 861, 1667, 4358, 5030 |
| StyI | CCWWGG | 5 cut(s) | 3125, 3286, 4056, 4522, 5242 |
| SwaI | ATTTAAAT | 1 cut(s) | 1714 |
| TaiI | ACGT | 5 cut(s) | 417, 3958, 4378, 5217, 5379 |
| TaqI | TCGA | 9 cut(s) | 101, 850, 1970, 2983, 3142, 3628, 5012, 5251, 5305 |
| TaqII | GACCGA | 1 cut(s) | 2415 |
| TatI | WGTACW | 8 cut(s) | 153, 811, 2480, 2960, 3119, 3341, 3530, 4702 |
| TauI | GCSGC | 6 cut(s) | 54, 59, 688, 691, 2921, 5144 |
| TseFI | GTSAC | 4 cut(s) | 586, 799, 4080, 4802 |
| Tsp45I | GTSAC | 4 cut(s) | 586, 799, 4080, 4802 |
| TspGWI | ACGGA | 5 cut(s) | 729, 1011, 1728, 3988, 4467 |
| TspMI | CCCGGG | 1 cut(s) | 3694 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1097, 4391 |
| VspI | ATTAAT | 1 cut(s) | 4913 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1953, 3837 |
| XbaI | TCTAGA | 1 cut(s) | 1742 |
| XceI | RCATGY | 6 cut(s) | 181, 2897, 3542, 3653, 4009, 4124 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4136 |
| XhoI | CTCGAG | 1 cut(s) | 5011 |
| XmaI | CCCGGG | 1 cut(s) | 3694 |
| XmiI | GTMKAC | 5 cut(s) | 943, 2429, 2784, 4226, 5337 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4321, 4718 |
| ZrmI | AGTACT | 2 cut(s) | 155, 4704 |
| Zsp2I | ATGCAT | 6 cut(s) | 312, 1821, 2164, 3010, 3540, 4846 |