No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05130 AT5G27330 |
| fragaria_vesca | FvH4_6g04961 |
| malus_domestica | MD04G1212300.v1.1 MD12G1227100.v1.1 |
| prunus_persica | Prupe.6G332700_v2.0.a1 |
| pyrus_communis | pycom04g18840 pycom12g21180 |
| rosa_chinensis | RchiOBHm_Chr3g0453461 |
| rosa_laevigata | RLG00000025512 |
| rosa_multiflora | Rmu_sc0000510.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00430430 |
| rosa_rugosa | Rorug02G0649200 |
| rosa_samantha | Rh3AG052000 Rh3BG053500 Rh3CG052800 Rh3DG053600 |
| rosa_wichuraiana | Rw3G004010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 190 |
| Acc36I | ACCTGC | 1 cut(s) | 190 |
| AccI | GTMKAC | 1 cut(s) | 1153 |
| AciI | CCGC | 8 cut(s) | 105, 108, 111, 353, 581, 686, 920, 1679 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 1515 |
| AcuI | CTGAAG | 2 cut(s) | 194, 1635 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 189, 622, 1360 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 124, 127 |
| AjnI | CCWGG | 1 cut(s) | 1764 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 257, 289, 857, 889, 1016, 1048, 1214, 1246 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1647, 1679 |
| Alw21I | GWGCWC | 1 cut(s) | 1559 |
| Alw26I | GTCTC | 3 cut(s) | 173, 387, 1066 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1832 |
| AoxI | GGCC | 6 cut(s) | 3, 219, 354, 954, 1119, 1761 |
| ApoI | RAATTY | 1 cut(s) | 1515 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1662 |
| AspS9I | GGNCC | 2 cut(s) | 355, 1762 |
| AsuC2I | CCSGG | 1 cut(s) | 617 |
| AsuHPI | GGTGA | 9 cut(s) | 269, 377, 478, 508, 613, 923, 973, 1145, 1175 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 1559 |
| BbsI | GAAGAC | 1 cut(s) | 1737 |
| Bbv12I | GWGCWC | 1 cut(s) | 1559 |
| BbvCI | CCTCAGC | 1 cut(s) | 1290 |
| BccI | CCATC | 8 cut(s) | 30, 355, 506, 553, 793, 1124, 1435, 1717 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 500, 534 |
| BciT130I | CCWGG | 1 cut(s) | 1766 |
| BcnI | CCSGG | 1 cut(s) | 617 |
| BcoDI | GTCTC | 3 cut(s) | 173, 387, 1066 |
| BfaI | CTAG | 1 cut(s) | 1601 |
| BfmI | CTRYAG | 2 cut(s) | 1590, 1824 |
| BfuAI | ACCTGC | 1 cut(s) | 190 |
| BlpI | GCTNAGC | 2 cut(s) | 1143, 1311 |
| Bme1390I | CCNGG | 2 cut(s) | 617, 1766 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 124, 127 |
| BmgT120I | GGNCC | 2 cut(s) | 355, 1762 |
| BmrFI | CCNGG | 2 cut(s) | 617, 1766 |
| BmsI | GCATC | 3 cut(s) | 1492, 1678, 1838 |
| BpiI | GAAGAC | 1 cut(s) | 1737 |
| BpmI | CTGGAG | 4 cut(s) | 344, 911, 917, 1769 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1290 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1143, 1311 |
| BpuEI | CTTGAG | 4 cut(s) | 134, 338, 1061, 1224 |
| BpuMI | CCSGG | 1 cut(s) | 617 |
| BsaI | GGTCTC | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 5 cut(s) | 114, 616, 957, 1651, 1764 |
| BsaWI | WCCGGW | 1 cut(s) | 189 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 269, 299, 419, 449, 1396, 1426, 1647, 1677 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 189, 622, 1360 |
| Bse1I | ACTGG | 2 cut(s) | 1635, 1752 |
| Bse3DI | GCAATG | 1 cut(s) | 617 |
| BseBI | CCWGG | 1 cut(s) | 1766 |
| BseDI | CCNNGG | 5 cut(s) | 114, 616, 957, 1651, 1764 |
| BseGI | GGATG | 3 cut(s) | 685, 1180, 1693 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 189, 622, 1360 |
| BseMI | GCAATG | 1 cut(s) | 617 |
| BseNI | ACTGG | 2 cut(s) | 1635, 1752 |
| BseRI | GAGGAG | 8 cut(s) | 430, 578, 599, 644, 1124, 1376, 1417, 1567 |
| BseYI | CCCAGC | 1 cut(s) | 1547 |
| BsgI | GTGCAG | 1 cut(s) | 1505 |
| Bsh1285I | CGRYCG | 1 cut(s) | 190 |
| BshFI | GGCC | 6 cut(s) | 5, 221, 356, 956, 1121, 1763 |
| BsiEI | CGRYCG | 1 cut(s) | 190 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1559 |
| BsiSI | CCGG | 2 cut(s) | 190, 616 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 189, 622, 1360 |
| BsmAI | GTCTC | 3 cut(s) | 173, 387, 1066 |
| BsmBI | CGTCTC | 1 cut(s) | 387 |
| BsmI | GAATGC | 2 cut(s) | 1228, 1595 |
| BsnI | GGCC | 6 cut(s) | 5, 221, 356, 956, 1121, 1763 |
| Bso31I | GGTCTC | 1 cut(s) | 173 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1559 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1143, 1311 |
| Bsp19I | CCATGG | 1 cut(s) | 114 |
| BspACI | CCGC | 8 cut(s) | 105, 108, 111, 353, 581, 686, 920, 1679 |
| BspANI | GGCC | 6 cut(s) | 5, 221, 356, 956, 1121, 1763 |
| BspHI | TCATGA | 1 cut(s) | 1519 |
| BspMAI | CTGCAG | 2 cut(s) | 1594, 1828 |
| BspMI | ACCTGC | 1 cut(s) | 190 |
| BspQI | GCTCTTC | 1 cut(s) | 1484 |
| BspTNI | GGTCTC | 1 cut(s) | 173 |
| BsrDI | GCAATG | 1 cut(s) | 617 |
| BsrI | ACTGG | 2 cut(s) | 1635, 1752 |
| BssECI | CCNNGG | 5 cut(s) | 114, 616, 957, 1651, 1764 |
| BssT1I | CCWWGG | 2 cut(s) | 114, 957 |
| Bst2UI | CCWGG | 1 cut(s) | 1766 |
| Bst4CI | ACNGT | 2 cut(s) | 905, 1264 |
| Bst6I | CTCTTC | 7 cut(s) | 290, 323, 725, 776, 1209, 1484, 1769 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1835 |
| BstC8I | GCNNGC | 3 cut(s) | 141, 519, 1566 |
| BstDSI | CCRYGG | 1 cut(s) | 114 |
| BstF5I | GGATG | 3 cut(s) | 685, 1180, 1693 |
| BstMAI | GTCTC | 3 cut(s) | 173, 387, 1066 |
| BstMCI | CGRYCG | 1 cut(s) | 190 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 527, 1276, 1601, 1835, 1844 |
| BstNI | CCWGG | 1 cut(s) | 1766 |
| BstSCI | CCNGG | 2 cut(s) | 615, 1764 |
| BstSFI | CTRYAG | 2 cut(s) | 1590, 1824 |
| BstV2I | GAAGAC | 1 cut(s) | 1737 |
| BsuRI | GGCC | 6 cut(s) | 5, 221, 356, 956, 1121, 1763 |
| BtgI | CCRYGG | 1 cut(s) | 114 |
| BtgZI | GCGATG | 1 cut(s) | 677 |
| BtsCI | GGATG | 3 cut(s) | 685, 1180, 1693 |
| BtsI | GCAGTG | 1 cut(s) | 1587 |
| BtsIMutI | CAGTG | 1 cut(s) | 1587 |
| BveI | ACCTGC | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 3 cut(s) | 141, 519, 1566 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1832 |
| CciI | TCATGA | 1 cut(s) | 1519 |
| Cfr13I | GGNCC | 2 cut(s) | 355, 1762 |
| CviAII | CATG | 2 cut(s) | 115, 1520 |
| DriI | GACNNNNNGTC | 2 cut(s) | 124, 127 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 7 cut(s) | 290, 323, 725, 776, 1209, 1484, 1769 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 124, 127 |
| EarI | CTCTTC | 7 cut(s) | 290, 323, 725, 776, 1209, 1484, 1769 |
| EciI | GGCGGA | 1 cut(s) | 701 |
| Ecl136II | GAGCTC | 1 cut(s) | 1557 |
| Eco130I | CCWWGG | 2 cut(s) | 114, 957 |
| Eco147I | AGGCCT | 1 cut(s) | 956 |
| Eco24I | GRGCYC | 1 cut(s) | 1559 |
| Eco31I | GGTCTC | 1 cut(s) | 173 |
| Eco32I | GATATC | 1 cut(s) | 1480 |
| Eco53kI | GAGCTC | 1 cut(s) | 1557 |
| Eco57I | CTGAAG | 2 cut(s) | 194, 1635 |
| EcoICRI | GAGCTC | 1 cut(s) | 1557 |
| EcoRII | CCWGG | 1 cut(s) | 1764 |
| EcoRV | GATATC | 1 cut(s) | 1480 |
| EcoT14I | CCWWGG | 2 cut(s) | 114, 957 |
| EcoT38I | GRGCYC | 1 cut(s) | 1559 |
| ErhI | CCWWGG | 2 cut(s) | 114, 957 |
| Esp3I | CGTCTC | 1 cut(s) | 387 |
| FaeI | CATG | 2 cut(s) | 118, 1523 |
| FatI | CATG | 2 cut(s) | 114, 1519 |
| FauI | CCCGC | 1 cut(s) | 112 |
| FauNDI | CATATG | 1 cut(s) | 1672 |
| FblI | GTMKAC | 1 cut(s) | 1153 |
| FokI | GGATG | 3 cut(s) | 692, 1187, 1700 |
| FriOI | GRGCYC | 1 cut(s) | 1559 |
| FspBI | CTAG | 1 cut(s) | 1601 |
| GsaI | CCCAGC | 1 cut(s) | 1551 |
| GsuI | CTGGAG | 4 cut(s) | 344, 911, 917, 1769 |
| HaeIII | GGCC | 6 cut(s) | 5, 221, 356, 956, 1121, 1763 |
| HapII | CCGG | 2 cut(s) | 190, 616 |
| Hin1II | CATG | 2 cut(s) | 118, 1523 |
| HinfI | GANTC | 6 cut(s) | 236, 469, 1074, 1457, 1541, 1751 |
| HpaII | CCGG | 2 cut(s) | 190, 616 |
| HphI | GGTGA | 9 cut(s) | 269, 377, 478, 508, 613, 923, 973, 1145, 1175 |
| Hpy166II | GTNNAC | 1 cut(s) | 1154 |
| Hpy188I | TCNGA | 9 cut(s) | 133, 241, 1299, 1501, 1509, 1615, 1655, 1709, 1773 |
| Hpy188III | TCNNGA | 4 cut(s) | 317, 890, 1127, 1520 |
| Hpy8I | GTNNAC | 1 cut(s) | 1154 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 133, 1807 |
| HpyCH4III | ACNGT | 2 cut(s) | 905, 1264 |
| HpyCH4V | TGCA | 5 cut(s) | 610, 1486, 1592, 1676, 1826 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 527, 1276, 1601, 1835, 1844 |
| Hsp92II | CATG | 2 cut(s) | 118, 1523 |
| LguI | GCTCTTC | 1 cut(s) | 1484 |
| LmnI | GCTCC | 4 cut(s) | 892, 1066, 1207, 1554 |
| LweI | GCATC | 3 cut(s) | 1492, 1678, 1838 |
| MaeI | CTAG | 1 cut(s) | 1601 |
| MaeIII | GTNAC | 1 cut(s) | 1042 |
| MfeI | CAATTG | 1 cut(s) | 1385 |
| MhlI | GDGCHC | 1 cut(s) | 1559 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 830, 1052, 1385, 1515, 1783 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 478, 1068, 1760 |
| MmeI | TCCRAC | 4 cut(s) | 111, 687, 855, 1665 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1662 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 951, 1055, 1371, 1533 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 1679 |
| MspI | CCGG | 2 cut(s) | 190, 616 |
| MspR9I | CCNGG | 2 cut(s) | 617, 1766 |
| MunI | CAATTG | 1 cut(s) | 1385 |
| Mva1269I | GAATGC | 2 cut(s) | 1228, 1595 |
| MvaI | CCWGG | 1 cut(s) | 1766 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 527, 1276, 1601, 1835, 1844 |
| NciI | CCSGG | 1 cut(s) | 617 |
| NcoI | CCATGG | 1 cut(s) | 114 |
| NdeI | CATATG | 1 cut(s) | 1672 |
| NlaIII | CATG | 2 cut(s) | 118, 1523 |
| PagI | TCATGA | 1 cut(s) | 1519 |
| PaqCI | CACCTGC | 1 cut(s) | 190 |
| PceI | AGGCCT | 1 cut(s) | 956 |
| PciSI | GCTCTTC | 1 cut(s) | 1484 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PctI | GAATGC | 2 cut(s) | 1228, 1595 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1662 |
| PfeI | GAWTC | 3 cut(s) | 236, 1457, 1541 |
| PleI | GAGTC | 3 cut(s) | 477, 1068, 1759 |
| PpsI | GAGTC | 3 cut(s) | 477, 1068, 1759 |
| Psp124BI | GAGCTC | 1 cut(s) | 1559 |
| Psp6I | CCWGG | 1 cut(s) | 1764 |
| PspFI | CCCAGC | 1 cut(s) | 1547 |
| PspGI | CCWGG | 1 cut(s) | 1764 |
| PspPI | GGNCC | 2 cut(s) | 355, 1762 |
| PstI | CTGCAG | 2 cut(s) | 1594, 1828 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1832 |
| SacI | GAGCTC | 1 cut(s) | 1559 |
| SapI | GCTCTTC | 1 cut(s) | 1484 |
| SaqAI | TTAA | 4 cut(s) | 951, 1055, 1371, 1533 |
| Sau96I | GGNCC | 2 cut(s) | 355, 1762 |
| SchI | GAGTC | 3 cut(s) | 478, 1068, 1760 |
| ScrFI | CCNGG | 2 cut(s) | 617, 1766 |
| SduI | GDGCHC | 1 cut(s) | 1559 |
| SfaNI | GCATC | 3 cut(s) | 1492, 1678, 1838 |
| SfcI | CTRYAG | 2 cut(s) | 1590, 1824 |
| SmlI | CTYRAG | 4 cut(s) | 149, 317, 1076, 1239 |
| SmoI | CTYRAG | 4 cut(s) | 149, 317, 1076, 1239 |
| Sse9I | AATT | 5 cut(s) | 830, 1052, 1385, 1515, 1783 |
| SseBI | AGGCCT | 1 cut(s) | 956 |
| SsiI | CCGC | 8 cut(s) | 105, 108, 111, 353, 581, 686, 920, 1679 |
| SspMI | CTAG | 1 cut(s) | 1601 |
| SstI | GAGCTC | 1 cut(s) | 1559 |
| StuI | AGGCCT | 1 cut(s) | 956 |
| StyD4I | CCNGG | 2 cut(s) | 615, 1764 |
| StyI | CCWWGG | 2 cut(s) | 114, 957 |
| TaaI | ACNGT | 2 cut(s) | 905, 1264 |
| TaqI | TCGA | 7 cut(s) | 186, 472, 510, 525, 545, 1126, 1559 |
| TasI | AATT | 5 cut(s) | 830, 1052, 1385, 1515, 1783 |
| TauI | GCSGC | 4 cut(s) | 110, 113, 356, 923 |
| TfiI | GAWTC | 3 cut(s) | 236, 1457, 1541 |
| Tru1I | TTAA | 4 cut(s) | 951, 1055, 1371, 1533 |
| Tru9I | TTAA | 4 cut(s) | 951, 1055, 1371, 1533 |
| TscAI | CASTG | 1 cut(s) | 1594 |
| TspDTI | ATGAA | 3 cut(s) | 398, 1508, 1554 |
| TspRI | CASTG | 1 cut(s) | 1594 |
| XapI | RAATTY | 1 cut(s) | 1515 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XmiI | GTMKAC | 1 cut(s) | 1153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1662 |
| XspI | CTAG | 1 cut(s) | 1601 |