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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05130 AT5G27330 |
| fragaria_vesca | FvH4_6g04961 |
| malus_domestica | MD04G1212300.v1.1 MD12G1227100.v1.1 |
| prunus_persica | Prupe.6G332700_v2.0.a1 |
| pyrus_communis | pycom04g18840 pycom12g21180 |
| rosa_chinensis | RchiOBHm_Chr3g0453461 |
| rosa_laevigata | RLG00000025512 |
| rosa_multiflora | Rmu_sc0000510.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00430430 |
| rosa_rugosa | Rorug02G0649200 |
| rosa_samantha | Rh3AG052000 Rh3BG053500 Rh3CG052800 Rh3DG053600 |
| rosa_wichuraiana | Rw3G004010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 193 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1828 |
| Acc36I | ACCTGC | 1 cut(s) | 193 |
| AccI | GTMKAC | 1 cut(s) | 1177 |
| AciI | CCGC | 9 cut(s) | 102, 105, 108, 111, 710, 746, 944, 1474, 1703 |
| AclWI | GGATC | 1 cut(s) | 618 |
| AcoI | YGGCCR | 2 cut(s) | 3, 850 |
| AcuI | CTGAAG | 2 cut(s) | 1284, 1659 |
| AcyI | GRCGYC | 1 cut(s) | 36 |
| AfaI | GTAC | 1 cut(s) | 1719 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 192, 547, 646 |
| AflIII | ACRYGT | 1 cut(s) | 126 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 130 |
| AjiI | CACGTC | 1 cut(s) | 127 |
| AjnI | CCWGG | 1 cut(s) | 1794 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1040, 1072, 1238, 1270 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1671, 1703 |
| AluBI | AGCT | 9 cut(s) | 142, 274, 457, 490, 919, 1171, 1366, 1423, 1628 |
| AluI | AGCT | 9 cut(s) | 142, 274, 457, 490, 919, 1171, 1366, 1423, 1628 |
| Alw26I | GTCTC | 1 cut(s) | 176 |
| AlwI | GGATC | 1 cut(s) | 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1862 |
| AoxI | GGCC | 7 cut(s) | 3, 222, 538, 850, 978, 1143, 1791 |
| ApeKI | GCWGC | 8 cut(s) | 199, 814, 941, 1616, 1700, 1853, 1856, 1874 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 296, 328 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1686, 1814 |
| AspLEI | GCGC | 1 cut(s) | 1785 |
| AspS9I | GGNCC | 3 cut(s) | 223, 1578, 1792 |
| AsuC2I | CCSGG | 1 cut(s) | 497 |
| AsuHPI | GGTGA | 6 cut(s) | 415, 532, 637, 737, 947, 1199 |
| AvaII | GGWCC | 1 cut(s) | 1578 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbsI | GAAGAC | 2 cut(s) | 338, 1761 |
| BbvCI | CCTCAGC | 2 cut(s) | 1314, 1424 |
| BbvI | GCAGC | 8 cut(s) | 211, 826, 928, 1628, 1712, 1840, 1861, 1868 |
| BccI | CCATC | 8 cut(s) | 30, 256, 358, 577, 817, 955, 1342, 1459 |
| BceAI | ACGGC | 1 cut(s) | 553 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 524, 558, 1206, 1240 |
| BciT130I | CCWGG | 1 cut(s) | 1796 |
| BcnI | CCSGG | 1 cut(s) | 497 |
| BcoDI | GTCTC | 1 cut(s) | 176 |
| BfaI | CTAG | 1 cut(s) | 1625 |
| BfmI | CTRYAG | 2 cut(s) | 1614, 1854 |
| BfuAI | ACCTGC | 1 cut(s) | 193 |
| BlpI | GCTNAGC | 3 cut(s) | 491, 1167, 1335 |
| Bme1390I | CCNGG | 2 cut(s) | 497, 1796 |
| Bme18I | GGWCC | 1 cut(s) | 1578 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 130 |
| BmgBI | CACGTC | 1 cut(s) | 127 |
| BmgT120I | GGNCC | 3 cut(s) | 223, 1578, 1792 |
| BmrFI | CCNGG | 2 cut(s) | 497, 1796 |
| BmsI | GCATC | 2 cut(s) | 1273, 1516 |
| BpiI | GAAGAC | 2 cut(s) | 338, 1761 |
| BpmI | CTGGAG | 3 cut(s) | 569, 941, 1793 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1314, 1424 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 491, 1167, 1335 |
| BpuEI | CTTGAG | 2 cut(s) | 137, 161 |
| BpuMI | CCSGG | 1 cut(s) | 497 |
| BsaHI | GRCGYC | 1 cut(s) | 36 |
| BsaI | GGTCTC | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 6 cut(s) | 117, 640, 981, 1675, 1788, 1794 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 230, 260, 272, 302, 1671, 1701 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 192, 547, 646 |
| Bse1I | ACTGG | 1 cut(s) | 1776 |
| Bse3DI | GCAATG | 2 cut(s) | 641, 1234 |
| BseBI | CCWGG | 1 cut(s) | 1796 |
| BseDI | CCNNGG | 6 cut(s) | 117, 640, 981, 1675, 1788, 1794 |
| BseGI | GGATG | 2 cut(s) | 267, 457 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 192, 547, 646 |
| BseMI | GCAATG | 2 cut(s) | 641, 1234 |
| BseNI | ACTGG | 1 cut(s) | 1776 |
| BseRI | GAGGAG | 7 cut(s) | 434, 437, 454, 604, 668, 938, 1148 |
| BseXI | GCAGC | 8 cut(s) | 211, 826, 928, 1628, 1712, 1840, 1861, 1868 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 1 cut(s) | 1529 |
| Bsh1285I | CGRYCG | 1 cut(s) | 193 |
| BshFI | GGCC | 7 cut(s) | 5, 224, 540, 852, 980, 1145, 1793 |
| BsiEI | CGRYCG | 1 cut(s) | 193 |
| BsiSI | CCGG | 1 cut(s) | 496 |
| BslFI | GGGAC | 1 cut(s) | 343 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 192, 547, 646 |
| BsmAI | GTCTC | 1 cut(s) | 176 |
| BsmFI | GGGAC | 1 cut(s) | 343 |
| BsmI | GAATGC | 2 cut(s) | 1252, 1619 |
| BsnI | GGCC | 7 cut(s) | 5, 224, 540, 852, 980, 1145, 1793 |
| Bso31I | GGTCTC | 1 cut(s) | 176 |
| Bsp143I | GATC | 2 cut(s) | 190, 610 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 491, 1167, 1335 |
| Bsp19I | CCATGG | 1 cut(s) | 117 |
| BspACI | CCGC | 9 cut(s) | 102, 105, 108, 111, 710, 746, 944, 1474, 1703 |
| BspANI | GGCC | 7 cut(s) | 5, 224, 540, 852, 980, 1145, 1793 |
| BspHI | TCATGA | 1 cut(s) | 1543 |
| BspMAI | CTGCAG | 2 cut(s) | 1618, 1858 |
| BspMI | ACCTGC | 1 cut(s) | 193 |
| BspPI | GGATC | 1 cut(s) | 618 |
| BspQI | GCTCTTC | 1 cut(s) | 1508 |
| BspTNI | GGTCTC | 1 cut(s) | 176 |
| BsrDI | GCAATG | 2 cut(s) | 641, 1234 |
| BsrI | ACTGG | 1 cut(s) | 1776 |
| BssECI | CCNNGG | 6 cut(s) | 117, 640, 981, 1675, 1788, 1794 |
| BssMI | GATC | 2 cut(s) | 190, 610 |
| BssNI | GRCGYC | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 3 cut(s) | 117, 981, 1675 |
| Bst2UI | CCWGG | 1 cut(s) | 1796 |
| Bst4CI | ACNGT | 3 cut(s) | 337, 1013, 1254 |
| Bst6I | CTCTTC | 8 cut(s) | 293, 401, 749, 984, 1233, 1508, 1799, 1805 |
| BstACI | GRCGYC | 1 cut(s) | 36 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1874 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDSI | CCRYGG | 2 cut(s) | 117, 1788 |
| BstF5I | GGATG | 2 cut(s) | 267, 457 |
| BstHHI | GCGC | 1 cut(s) | 1785 |
| BstKTI | GATC | 2 cut(s) | 193, 613 |
| BstMAI | GTCTC | 1 cut(s) | 176 |
| BstMBI | GATC | 2 cut(s) | 190, 610 |
| BstMCI | CGRYCG | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 110, 551, 1300, 1625, 1865, 1874 |
| BstNI | CCWGG | 1 cut(s) | 1796 |
| BstSCI | CCNGG | 2 cut(s) | 495, 1794 |
| BstSFI | CTRYAG | 2 cut(s) | 1614, 1854 |
| BstV1I | GCAGC | 8 cut(s) | 211, 826, 928, 1628, 1712, 1840, 1861, 1868 |
| BstV2I | GAAGAC | 2 cut(s) | 338, 1761 |
| BsuRI | GGCC | 7 cut(s) | 5, 224, 540, 852, 980, 1145, 1793 |
| BtgI | CCRYGG | 2 cut(s) | 117, 1788 |
| BtgZI | GCGATG | 3 cut(s) | 701, 1212, 1452 |
| BtrI | CACGTC | 1 cut(s) | 127 |
| BtsCI | GGATG | 2 cut(s) | 267, 457 |
| BtsI | GCAGTG | 1 cut(s) | 1611 |
| BtsIMutI | CAGTG | 2 cut(s) | 1068, 1611 |
| BveI | ACCTGC | 1 cut(s) | 193 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1862 |
| CciI | TCATGA | 1 cut(s) | 1543 |
| CfoI | GCGC | 1 cut(s) | 1785 |
| Cfr13I | GGNCC | 3 cut(s) | 223, 1578, 1792 |
| CseI | GACGC | 3 cut(s) | 44, 345, 1848 |
| Csp6I | GTAC | 1 cut(s) | 1718 |
| CviAII | CATG | 3 cut(s) | 118, 277, 1544 |
| CviQI | GTAC | 1 cut(s) | 1718 |
| DpnI | GATC | 2 cut(s) | 192, 612 |
| DpnII | GATC | 2 cut(s) | 190, 610 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1828 |
| DriI | GACNNNNNGTC | 1 cut(s) | 130 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1828 |
| EaeI | YGGCCR | 2 cut(s) | 3, 850 |
| Eam1104I | CTCTTC | 8 cut(s) | 293, 401, 749, 984, 1233, 1508, 1799, 1805 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 130 |
| EarI | CTCTTC | 8 cut(s) | 293, 401, 749, 984, 1233, 1508, 1799, 1805 |
| EciI | GGCGGA | 1 cut(s) | 725 |
| Eco130I | CCWWGG | 3 cut(s) | 117, 981, 1675 |
| Eco147I | AGGCCT | 1 cut(s) | 980 |
| Eco31I | GGTCTC | 1 cut(s) | 176 |
| Eco32I | GATATC | 1 cut(s) | 1714 |
| Eco47I | GGWCC | 1 cut(s) | 1578 |
| Eco57I | CTGAAG | 2 cut(s) | 1284, 1659 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1578 |
| EcoRII | CCWGG | 1 cut(s) | 1794 |
| EcoRV | GATATC | 1 cut(s) | 1714 |
| EcoT14I | CCWWGG | 3 cut(s) | 117, 981, 1675 |
| ErhI | CCWWGG | 3 cut(s) | 117, 981, 1675 |
| FaeI | CATG | 3 cut(s) | 121, 280, 1547 |
| FaqI | GGGAC | 1 cut(s) | 343 |
| FatI | CATG | 3 cut(s) | 117, 276, 1543 |
| FauNDI | CATATG | 2 cut(s) | 1696, 1870 |
| FblI | GTMKAC | 1 cut(s) | 1177 |
| FokI | GGATG | 2 cut(s) | 274, 464 |
| FspBI | CTAG | 1 cut(s) | 1625 |
| GlaI | GCGC | 1 cut(s) | 1784 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 3 cut(s) | 569, 941, 1793 |
| HaeIII | GGCC | 7 cut(s) | 5, 224, 540, 852, 980, 1145, 1793 |
| HapII | CCGG | 1 cut(s) | 496 |
| HgaI | GACGC | 3 cut(s) | 44, 345, 1848 |
| HhaI | GCGC | 1 cut(s) | 1785 |
| Hin1I | GRCGYC | 1 cut(s) | 36 |
| Hin1II | CATG | 3 cut(s) | 121, 280, 1547 |
| Hin6I | GCGC | 1 cut(s) | 1783 |
| HinP1I | GCGC | 1 cut(s) | 1783 |
| HincII | GTYRAC | 1 cut(s) | 1274 |
| HindII | GTYRAC | 1 cut(s) | 1274 |
| HinfI | GANTC | 6 cut(s) | 239, 466, 1098, 1481, 1565, 1775 |
| HpaII | CCGG | 1 cut(s) | 496 |
| HphI | GGTGA | 6 cut(s) | 415, 532, 637, 737, 947, 1199 |
| Hpy166II | GTNNAC | 2 cut(s) | 1178, 1274 |
| Hpy188III | TCNNGA | 7 cut(s) | 47, 470, 548, 1151, 1397, 1544, 1819 |
| Hpy8I | GTNNAC | 2 cut(s) | 1178, 1274 |
| Hpy99I | CGWCG | 3 cut(s) | 128, 136, 539 |
| HpyCH4III | ACNGT | 3 cut(s) | 337, 1013, 1254 |
| HpyCH4IV | ACGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 8 cut(s) | 901, 1227, 1250, 1510, 1616, 1700, 1856, 1868 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 110, 551, 1300, 1625, 1865, 1874 |
| HpySE526I | ACGT | 1 cut(s) | 126 |
| Hsp92I | GRCGYC | 1 cut(s) | 36 |
| Hsp92II | CATG | 3 cut(s) | 121, 280, 1547 |
| HspAI | GCGC | 1 cut(s) | 1783 |
| Kzo9I | GATC | 2 cut(s) | 190, 610 |
| LguI | GCTCTTC | 1 cut(s) | 1508 |
| LmnI | GCTCC | 3 cut(s) | 916, 1090, 1790 |
| Lsp1109I | GCAGC | 8 cut(s) | 211, 826, 928, 1628, 1712, 1840, 1861, 1868 |
| LweI | GCATC | 2 cut(s) | 1273, 1516 |
| MaeI | CTAG | 1 cut(s) | 1625 |
| MaeII | ACGT | 1 cut(s) | 126 |
| MaeIII | GTNAC | 2 cut(s) | 302, 1066 |
| MalI | GATC | 2 cut(s) | 192, 612 |
| MboI | GATC | 2 cut(s) | 190, 610 |
| MfeI | CAATTG | 2 cut(s) | 854, 1409 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 854, 1053, 1076, 1409, 1845 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 248, 475, 1784 |
| MmeI | TCCRAC | 6 cut(s) | 114, 306, 711, 816, 847, 1689 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1686, 1814 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 975, 1299, 1557 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1281 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 1703 |
| MspI | CCGG | 1 cut(s) | 496 |
| MspR9I | CCNGG | 2 cut(s) | 497, 1796 |
| MunI | CAATTG | 2 cut(s) | 854, 1409 |
| Mva1269I | GAATGC | 2 cut(s) | 1252, 1619 |
| MvaI | CCWGG | 1 cut(s) | 1796 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 110, 551, 1300, 1625, 1865, 1874 |
| NciI | CCSGG | 1 cut(s) | 497 |
| NcoI | CCATGG | 1 cut(s) | 117 |
| NdeI | CATATG | 2 cut(s) | 1696, 1870 |
| NdeII | GATC | 2 cut(s) | 190, 610 |
| NlaIII | CATG | 3 cut(s) | 121, 280, 1547 |
| NmeAIII | GCCGAG | 1 cut(s) | 665 |
| NmuCI | GTSAC | 2 cut(s) | 302, 1066 |
| PagI | TCATGA | 1 cut(s) | 1543 |
| PaqCI | CACCTGC | 1 cut(s) | 193 |
| PceI | AGGCCT | 1 cut(s) | 980 |
| PciSI | GCTCTTC | 1 cut(s) | 1508 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 348 |
| PctI | GAATGC | 2 cut(s) | 1252, 1619 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1686, 1814 |
| PfeI | GAWTC | 3 cut(s) | 1098, 1481, 1565 |
| Ple19I | CGATCG | 1 cut(s) | 193 |
| PleI | GAGTC | 3 cut(s) | 247, 474, 1783 |
| PpsI | GAGTC | 3 cut(s) | 247, 474, 1783 |
| PpuMI | RGGWCCY | 1 cut(s) | 1578 |
| Psp5II | RGGWCCY | 1 cut(s) | 1578 |
| Psp6I | CCWGG | 1 cut(s) | 1794 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 1794 |
| PspPI | GGNCC | 3 cut(s) | 223, 1578, 1792 |
| PspPPI | RGGWCCY | 1 cut(s) | 1578 |
| PstI | CTGCAG | 2 cut(s) | 1618, 1858 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1862 |
| PvuI | CGATCG | 1 cut(s) | 193 |
| RsaI | GTAC | 1 cut(s) | 1719 |
| RsaNI | GTAC | 1 cut(s) | 1718 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1281 |
| SapI | GCTCTTC | 1 cut(s) | 1508 |
| SaqAI | TTAA | 3 cut(s) | 975, 1299, 1557 |
| Sau3AI | GATC | 2 cut(s) | 190, 610 |
| Sau96I | GGNCC | 3 cut(s) | 223, 1578, 1792 |
| SchI | GAGTC | 3 cut(s) | 248, 475, 1784 |
| ScrFI | CCNGG | 2 cut(s) | 497, 1796 |
| SfaNI | GCATC | 2 cut(s) | 1273, 1516 |
| SfcI | CTRYAG | 2 cut(s) | 1614, 1854 |
| SinI | GGWCC | 1 cut(s) | 1578 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1281 |
| SmlI | CTYRAG | 2 cut(s) | 152, 176 |
| SmoI | CTYRAG | 2 cut(s) | 152, 176 |
| Sse9I | AATT | 5 cut(s) | 854, 1053, 1076, 1409, 1845 |
| SseBI | AGGCCT | 1 cut(s) | 980 |
| SsiI | CCGC | 9 cut(s) | 102, 105, 108, 111, 710, 746, 944, 1474, 1703 |
| SspMI | CTAG | 1 cut(s) | 1625 |
| StuI | AGGCCT | 1 cut(s) | 980 |
| StyD4I | CCNGG | 2 cut(s) | 495, 1794 |
| StyI | CCWWGG | 3 cut(s) | 117, 981, 1675 |
| TaaI | ACNGT | 3 cut(s) | 337, 1013, 1254 |
| TaiI | ACGT | 1 cut(s) | 129 |
| TaqI | TCGA | 6 cut(s) | 189, 285, 321, 534, 1150, 1583 |
| TasI | AATT | 5 cut(s) | 854, 1053, 1076, 1409, 1845 |
| TauI | GCSGC | 5 cut(s) | 107, 110, 113, 947, 1476 |
| TfiI | GAWTC | 3 cut(s) | 1098, 1481, 1565 |
| Tru1I | TTAA | 3 cut(s) | 975, 1299, 1557 |
| Tru9I | TTAA | 3 cut(s) | 975, 1299, 1557 |
| TscAI | CASTG | 2 cut(s) | 1075, 1618 |
| TseFI | GTSAC | 2 cut(s) | 302, 1066 |
| TseI | GCWGC | 8 cut(s) | 199, 814, 941, 1616, 1700, 1853, 1856, 1874 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 1066 |
| TspDTI | ATGAA | 2 cut(s) | 1532, 1578 |
| TspGWI | ACGGA | 2 cut(s) | 899, 1777 |
| TspRI | CASTG | 2 cut(s) | 1075, 1618 |
| VpaK11BI | GGWCC | 1 cut(s) | 1578 |
| XmiI | GTMKAC | 1 cut(s) | 1177 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1686, 1814 |
| XspI | CTAG | 1 cut(s) | 1625 |