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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05130 AT5G27330 |
| fragaria_vesca | FvH4_6g04961 |
| malus_domestica | MD04G1212300.v1.1 MD12G1227100.v1.1 |
| prunus_persica | Prupe.6G332700_v2.0.a1 |
| pyrus_communis | pycom04g18840 pycom12g21180 |
| rosa_chinensis | RchiOBHm_Chr3g0453461 |
| rosa_laevigata | RLG00000025512 |
| rosa_multiflora | Rmu_sc0000510.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00430430 |
| rosa_rugosa | Rorug02G0649200 |
| rosa_samantha | Rh3AG052000 Rh3BG053500 Rh3CG052800 Rh3DG053600 |
| rosa_wichuraiana | Rw3G004010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 214 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1849 |
| Acc36I | ACCTGC | 1 cut(s) | 214 |
| AccI | GTMKAC | 1 cut(s) | 1198 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 1560 |
| AcuI | CTGAAG | 2 cut(s) | 1305, 1680 |
| AcyI | GRCGYC | 1 cut(s) | 36 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 213, 667 |
| AflIII | ACRYGT | 1 cut(s) | 147 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 151 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| AjnI | CCWGG | 1 cut(s) | 1815 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1061, 1093, 1259, 1291 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1692, 1724 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1883 |
| AoxI | GGCC | 6 cut(s) | 3, 243, 378, 999, 1164, 1812 |
| ApeKI | GCWGC | 6 cut(s) | 962, 1637, 1874, 1877, 1895, 1898 |
| ApoI | RAATTY | 1 cut(s) | 1560 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 317, 349 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1707, 1835 |
| AspLEI | GCGC | 1 cut(s) | 1806 |
| AspS9I | GGNCC | 3 cut(s) | 244, 379, 1813 |
| AsuC2I | CCSGG | 1 cut(s) | 518 |
| AsuHPI | GGTGA | 5 cut(s) | 436, 485, 758, 968, 1220 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbsI | GAAGAC | 1 cut(s) | 1782 |
| BbvCI | CCTCAGC | 2 cut(s) | 1335, 1445 |
| BbvI | GCAGC | 6 cut(s) | 949, 1649, 1861, 1882, 1885, 1889 |
| BccI | CCATC | 7 cut(s) | 30, 379, 551, 598, 838, 976, 1480 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 545, 579, 1227, 1261 |
| BciT130I | CCWGG | 1 cut(s) | 1817 |
| BcnI | CCSGG | 1 cut(s) | 518 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 1 cut(s) | 1646 |
| BfmI | CTRYAG | 2 cut(s) | 1635, 1875 |
| BfuAI | ACCTGC | 1 cut(s) | 214 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 386 |
| BlpI | GCTNAGC | 3 cut(s) | 512, 1188, 1356 |
| Bme1390I | CCNGG | 2 cut(s) | 518, 1817 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 151 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 3 cut(s) | 244, 379, 1813 |
| BmrFI | CCNGG | 2 cut(s) | 518, 1817 |
| BmsI | GCATC | 2 cut(s) | 1294, 1537 |
| BpiI | GAAGAC | 1 cut(s) | 1782 |
| BpmI | CTGGAG | 2 cut(s) | 962, 1814 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1335, 1445 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 512, 1188, 1356 |
| BpuEI | CTTGAG | 2 cut(s) | 158, 182 |
| BpuMI | CCSGG | 1 cut(s) | 518 |
| BsaHI | GRCGYC | 1 cut(s) | 36 |
| BsaI | GGTCTC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 5 cut(s) | 138, 661, 1696, 1809, 1815 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 293, 323, 1692, 1722 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 213, 667 |
| Bse1I | ACTGG | 1 cut(s) | 1797 |
| Bse3DI | GCAATG | 1 cut(s) | 1465 |
| BseBI | CCWGG | 1 cut(s) | 1817 |
| BseDI | CCNNGG | 5 cut(s) | 138, 661, 1696, 1809, 1815 |
| BseGI | GGATG | 2 cut(s) | 637, 1225 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 213, 667 |
| BseMI | GCAATG | 1 cut(s) | 1465 |
| BseNI | ACTGG | 1 cut(s) | 1797 |
| BseRI | GAGGAG | 7 cut(s) | 455, 458, 475, 625, 689, 959, 1169 |
| BseXI | GCAGC | 6 cut(s) | 949, 1649, 1861, 1882, 1885, 1889 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 1 cut(s) | 1550 |
| Bsh1285I | CGRYCG | 1 cut(s) | 214 |
| BshFI | GGCC | 6 cut(s) | 5, 245, 380, 1001, 1166, 1814 |
| BsiEI | CGRYCG | 1 cut(s) | 214 |
| BsiSI | CCGG | 1 cut(s) | 517 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 213, 667 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmI | GAATGC | 2 cut(s) | 1273, 1640 |
| BsnI | GGCC | 6 cut(s) | 5, 245, 380, 1001, 1166, 1814 |
| Bso31I | GGTCTC | 1 cut(s) | 197 |
| Bsp143I | GATC | 2 cut(s) | 211, 993 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 512, 1188, 1356 |
| Bsp19I | CCATGG | 1 cut(s) | 138 |
| BspANI | GGCC | 6 cut(s) | 5, 245, 380, 1001, 1166, 1814 |
| BspHI | TCATGA | 1 cut(s) | 1564 |
| BspMAI | CTGCAG | 2 cut(s) | 1639, 1879 |
| BspMI | ACCTGC | 1 cut(s) | 214 |
| BspQI | GCTCTTC | 1 cut(s) | 1529 |
| BspTNI | GGTCTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 1 cut(s) | 1465 |
| BsrI | ACTGG | 1 cut(s) | 1797 |
| BssECI | CCNNGG | 5 cut(s) | 138, 661, 1696, 1809, 1815 |
| BssMI | GATC | 2 cut(s) | 211, 993 |
| BssNI | GRCGYC | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 1696 |
| Bst2UI | CCWGG | 1 cut(s) | 1817 |
| Bst4CI | ACNGT | 1 cut(s) | 1275 |
| BstACI | GRCGYC | 1 cut(s) | 36 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1895 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 165, 564 |
| BstDSI | CCRYGG | 2 cut(s) | 138, 1809 |
| BstF5I | GGATG | 2 cut(s) | 637, 1225 |
| BstHHI | GCGC | 1 cut(s) | 1806 |
| BstKTI | GATC | 2 cut(s) | 214, 996 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 2 cut(s) | 211, 993 |
| BstMCI | CGRYCG | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 128, 131, 386, 572, 1321, 1646, 1886, 1895 |
| BstNI | CCWGG | 1 cut(s) | 1817 |
| BstSCI | CCNGG | 2 cut(s) | 516, 1815 |
| BstSFI | CTRYAG | 2 cut(s) | 1635, 1875 |
| BstV1I | GCAGC | 6 cut(s) | 949, 1649, 1861, 1882, 1885, 1889 |
| BstV2I | GAAGAC | 1 cut(s) | 1782 |
| BsuRI | GGCC | 6 cut(s) | 5, 245, 380, 1001, 1166, 1814 |
| BtgI | CCRYGG | 2 cut(s) | 138, 1809 |
| BtgZI | GCGATG | 1 cut(s) | 722 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsCI | GGATG | 2 cut(s) | 637, 1225 |
| BtsI | GCAGTG | 1 cut(s) | 1632 |
| BtsIMutI | CAGTG | 3 cut(s) | 1089, 1248, 1632 |
| BveI | ACCTGC | 1 cut(s) | 214 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 165, 564 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1883 |
| CciI | TCATGA | 1 cut(s) | 1564 |
| CfoI | GCGC | 1 cut(s) | 1806 |
| Cfr13I | GGNCC | 3 cut(s) | 244, 379, 1813 |
| CseI | GACGC | 2 cut(s) | 44, 1869 |
| CviAII | CATG | 3 cut(s) | 139, 298, 1565 |
| DpnI | GATC | 2 cut(s) | 213, 995 |
| DpnII | GATC | 2 cut(s) | 211, 993 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1849 |
| DriI | GACNNNNNGTC | 1 cut(s) | 151 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1849 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 151 |
| EciI | GGCGGA | 1 cut(s) | 1739 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 1696 |
| Eco147I | AGGCCT | 1 cut(s) | 1001 |
| Eco31I | GGTCTC | 1 cut(s) | 197 |
| Eco32I | GATATC | 1 cut(s) | 1735 |
| Eco57I | CTGAAG | 2 cut(s) | 1305, 1680 |
| EcoRII | CCWGG | 1 cut(s) | 1815 |
| EcoRV | GATATC | 1 cut(s) | 1735 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 1696 |
| ErhI | CCWWGG | 2 cut(s) | 138, 1696 |
| FaeI | CATG | 3 cut(s) | 142, 301, 1568 |
| FatI | CATG | 3 cut(s) | 138, 297, 1564 |
| FauNDI | CATATG | 2 cut(s) | 1717, 1891 |
| FblI | GTMKAC | 1 cut(s) | 1198 |
| FokI | GGATG | 2 cut(s) | 644, 1232 |
| FspBI | CTAG | 1 cut(s) | 1646 |
| GlaI | GCGC | 1 cut(s) | 1805 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 2 cut(s) | 962, 1814 |
| HaeIII | GGCC | 6 cut(s) | 5, 245, 380, 1001, 1166, 1814 |
| HapII | CCGG | 1 cut(s) | 517 |
| HgaI | GACGC | 2 cut(s) | 44, 1869 |
| HhaI | GCGC | 1 cut(s) | 1806 |
| Hin1I | GRCGYC | 1 cut(s) | 36 |
| Hin1II | CATG | 3 cut(s) | 142, 301, 1568 |
| Hin6I | GCGC | 1 cut(s) | 1804 |
| HinP1I | GCGC | 1 cut(s) | 1804 |
| HinfI | GANTC | 6 cut(s) | 260, 487, 1119, 1502, 1586, 1796 |
| HpaII | CCGG | 1 cut(s) | 517 |
| HphI | GGTGA | 5 cut(s) | 436, 485, 758, 968, 1220 |
| Hpy166II | GTNNAC | 1 cut(s) | 1199 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 491, 1172, 1565, 1840 |
| Hpy8I | GTNNAC | 1 cut(s) | 1199 |
| Hpy99I | CGWCG | 2 cut(s) | 149, 157 |
| HpyCH4III | ACNGT | 1 cut(s) | 1275 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 7 cut(s) | 922, 1248, 1271, 1531, 1637, 1877, 1889 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 128, 131, 386, 572, 1321, 1646, 1886, 1895 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92I | GRCGYC | 1 cut(s) | 36 |
| Hsp92II | CATG | 3 cut(s) | 142, 301, 1568 |
| HspAI | GCGC | 1 cut(s) | 1804 |
| Kzo9I | GATC | 2 cut(s) | 211, 993 |
| LguI | GCTCTTC | 1 cut(s) | 1529 |
| LmnI | GCTCC | 3 cut(s) | 937, 1111, 1811 |
| Lsp1109I | GCAGC | 6 cut(s) | 949, 1649, 1861, 1882, 1885, 1889 |
| LweI | GCATC | 2 cut(s) | 1294, 1537 |
| MaeI | CTAG | 1 cut(s) | 1646 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 323, 1087 |
| MalI | GATC | 2 cut(s) | 213, 995 |
| MboI | GATC | 2 cut(s) | 211, 993 |
| MfeI | CAATTG | 2 cut(s) | 875, 1430 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 6 cut(s) | 875, 1074, 1097, 1430, 1560, 1866 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 269, 496, 1805 |
| MmeI | TCCRAC | 6 cut(s) | 135, 327, 732, 837, 868, 1710 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1707, 1835 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 648, 1320, 1416, 1578 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 517 |
| MspR9I | CCNGG | 2 cut(s) | 518, 1817 |
| MunI | CAATTG | 2 cut(s) | 875, 1430 |
| Mva1269I | GAATGC | 2 cut(s) | 1273, 1640 |
| MvaI | CCWGG | 1 cut(s) | 1817 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 128, 131, 386, 572, 1321, 1646, 1886, 1895 |
| NciI | CCSGG | 1 cut(s) | 518 |
| NcoI | CCATGG | 1 cut(s) | 138 |
| NdeI | CATATG | 2 cut(s) | 1717, 1891 |
| NdeII | GATC | 2 cut(s) | 211, 993 |
| NlaIII | CATG | 3 cut(s) | 142, 301, 1568 |
| NmeAIII | GCCGAG | 1 cut(s) | 686 |
| NmuCI | GTSAC | 2 cut(s) | 323, 1087 |
| PagI | TCATGA | 1 cut(s) | 1564 |
| PaqCI | CACCTGC | 1 cut(s) | 214 |
| PceI | AGGCCT | 1 cut(s) | 1001 |
| PciSI | GCTCTTC | 1 cut(s) | 1529 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 369 |
| PctI | GAATGC | 2 cut(s) | 1273, 1640 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1707, 1835 |
| PfeI | GAWTC | 3 cut(s) | 1119, 1502, 1586 |
| Ple19I | CGATCG | 1 cut(s) | 214 |
| PleI | GAGTC | 3 cut(s) | 268, 495, 1804 |
| PpsI | GAGTC | 3 cut(s) | 268, 495, 1804 |
| Psp6I | CCWGG | 1 cut(s) | 1815 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 1815 |
| PspPI | GGNCC | 3 cut(s) | 244, 379, 1813 |
| PstI | CTGCAG | 2 cut(s) | 1639, 1879 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1883 |
| PvuI | CGATCG | 1 cut(s) | 214 |
| SapI | GCTCTTC | 1 cut(s) | 1529 |
| SaqAI | TTAA | 4 cut(s) | 648, 1320, 1416, 1578 |
| Sau3AI | GATC | 2 cut(s) | 211, 993 |
| Sau96I | GGNCC | 3 cut(s) | 244, 379, 1813 |
| SchI | GAGTC | 3 cut(s) | 269, 496, 1805 |
| ScrFI | CCNGG | 2 cut(s) | 518, 1817 |
| SfaNI | GCATC | 2 cut(s) | 1294, 1537 |
| SfcI | CTRYAG | 2 cut(s) | 1635, 1875 |
| SmlI | CTYRAG | 2 cut(s) | 173, 197 |
| SmoI | CTYRAG | 2 cut(s) | 173, 197 |
| Sse9I | AATT | 6 cut(s) | 875, 1074, 1097, 1430, 1560, 1866 |
| SseBI | AGGCCT | 1 cut(s) | 1001 |
| SspMI | CTAG | 1 cut(s) | 1646 |
| StuI | AGGCCT | 1 cut(s) | 1001 |
| StyD4I | CCNGG | 2 cut(s) | 516, 1815 |
| StyI | CCWWGG | 2 cut(s) | 138, 1696 |
| TaaI | ACNGT | 1 cut(s) | 1275 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 3 cut(s) | 210, 555, 1171 |
| TasI | AATT | 6 cut(s) | 875, 1074, 1097, 1430, 1560, 1866 |
| TauI | GCSGC | 9 cut(s) | 125, 128, 131, 134, 223, 380, 968, 1497, 1724 |
| TfiI | GAWTC | 3 cut(s) | 1119, 1502, 1586 |
| Tru1I | TTAA | 4 cut(s) | 648, 1320, 1416, 1578 |
| Tru9I | TTAA | 4 cut(s) | 648, 1320, 1416, 1578 |
| TscAI | CASTG | 3 cut(s) | 1096, 1255, 1639 |
| TseFI | GTSAC | 2 cut(s) | 323, 1087 |
| TseI | GCWGC | 6 cut(s) | 962, 1637, 1874, 1877, 1895, 1898 |
| Tsp45I | GTSAC | 2 cut(s) | 323, 1087 |
| TspDTI | ATGAA | 3 cut(s) | 648, 1553, 1599 |
| TspGWI | ACGGA | 2 cut(s) | 920, 1798 |
| TspRI | CASTG | 3 cut(s) | 1096, 1255, 1639 |
| XapI | RAATTY | 1 cut(s) | 1560 |
| XmiI | GTMKAC | 1 cut(s) | 1198 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1707, 1835 |
| XspI | CTAG | 1 cut(s) | 1646 |