No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05130 AT5G27330 |
| fragaria_vesca | FvH4_6g04961 |
| malus_domestica | MD04G1212300.v1.1 MD12G1227100.v1.1 |
| prunus_persica | Prupe.6G332700_v2.0.a1 |
| pyrus_communis | pycom04g18840 pycom12g21180 |
| rosa_chinensis | RchiOBHm_Chr3g0453461 |
| rosa_laevigata | RLG00000025512 |
| rosa_multiflora | Rmu_sc0000510.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00430430 |
| rosa_rugosa | Rorug02G0649200 |
| rosa_samantha | Rh3AG052000 Rh3BG053500 Rh3CG052800 Rh3DG053600 |
| rosa_wichuraiana | Rw3G004010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1807 |
| Acc36I | ACCTGC | 1 cut(s) | 397 |
| AccBSI | CCGCTC | 1 cut(s) | 698 |
| AciI | CCGC | 3 cut(s) | 138, 698, 1453 |
| AclI | AACGTT | 1 cut(s) | 1422 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 5 cut(s) | 895, 1198, 1518, 1538, 1665 |
| AcuI | CTGAAG | 3 cut(s) | 138, 1263, 1638 |
| AfaI | GTAC | 1 cut(s) | 625 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1504 |
| AflII | CTTAAG | 1 cut(s) | 1562 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1217, 1249 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 161, 193 |
| AluBI | AGCT | 9 cut(s) | 478, 511, 646, 1150, 1535, 1571, 1654, 1706, 1726 |
| AluI | AGCT | 9 cut(s) | 478, 511, 646, 1150, 1535, 1571, 1654, 1706, 1726 |
| Alw21I | GWGCWC | 1 cut(s) | 1032 |
| Alw26I | GTCTC | 4 cut(s) | 197, 838, 1243, 1728 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1841 |
| AoxI | GGCC | 2 cut(s) | 3, 243 |
| ApeKI | GCWGC | 4 cut(s) | 1595, 1744, 1832, 1835 |
| ApoI | RAATTY | 5 cut(s) | 895, 1198, 1518, 1538, 1665 |
| AseI | ATTAAT | 1 cut(s) | 954 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1706, 1793 |
| AspS9I | GGNCC | 1 cut(s) | 1290 |
| AsuHPI | GGTGA | 2 cut(s) | 409, 553 |
| AvaII | GGWCC | 1 cut(s) | 1290 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 2 cut(s) | 1341, 1373 |
| Bbv12I | GWGCWC | 1 cut(s) | 1032 |
| BbvCI | CCTCAGC | 1 cut(s) | 567 |
| BbvI | GCAGC | 4 cut(s) | 1607, 1756, 1819, 1847 |
| BccI | CCATC | 6 cut(s) | 60, 379, 551, 1102, 1307, 1438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1185, 1219 |
| BclI | TGATCA | 1 cut(s) | 1645 |
| BcoDI | GTCTC | 4 cut(s) | 197, 838, 1243, 1728 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfmI | CTRYAG | 2 cut(s) | 1593, 1833 |
| BfrI | CTTAAG | 1 cut(s) | 1562 |
| BfuAI | ACCTGC | 1 cut(s) | 397 |
| BisI | GCNGC | 5 cut(s) | 1453, 1596, 1745, 1833, 1836 |
| BlpI | GCTNAGC | 1 cut(s) | 1146 |
| BlsI | GCNGC | 5 cut(s) | 1454, 1597, 1746, 1834, 1837 |
| Bme18I | GGWCC | 1 cut(s) | 1290 |
| BmgT120I | GGNCC | 1 cut(s) | 1290 |
| BmiI | GGNNCC | 1 cut(s) | 1555 |
| BmrI | ACTGGG | 1 cut(s) | 324 |
| BmsI | GCATC | 6 cut(s) | 228, 1252, 1332, 1476, 1681, 1847 |
| BmuI | ACTGGG | 1 cut(s) | 324 |
| BpiI | GAAGAC | 2 cut(s) | 1341, 1373 |
| Bpu10I | CCTNAGC | 1 cut(s) | 567 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1146 |
| BpuEI | CTTGAG | 2 cut(s) | 158, 182 |
| BsaI | GGTCTC | 2 cut(s) | 197, 1243 |
| BsaJI | CCNNGG | 4 cut(s) | 90, 141, 246, 1293 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 293, 323, 1399, 1429 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1504 |
| Bse1I | ACTGG | 2 cut(s) | 319, 1605 |
| BseDI | CCNNGG | 4 cut(s) | 90, 141, 246, 1293 |
| BseGI | GGATG | 5 cut(s) | 100, 151, 541, 637, 1318 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1504 |
| BseNI | ACTGG | 2 cut(s) | 319, 1605 |
| BseRI | GAGGAG | 4 cut(s) | 185, 584, 992, 1127 |
| BseXI | GCAGC | 4 cut(s) | 1607, 1756, 1819, 1847 |
| BseYI | CCCAGC | 1 cut(s) | 525 |
| BsgI | GTGCAG | 2 cut(s) | 692, 1745 |
| BshFI | GGCC | 2 cut(s) | 5, 245 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1032 |
| BslFI | GGGAC | 3 cut(s) | 43, 163, 1004 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1504 |
| BsmAI | GTCTC | 4 cut(s) | 197, 838, 1243, 1728 |
| BsmFI | GGGAC | 3 cut(s) | 43, 163, 1004 |
| BsnI | GGCC | 2 cut(s) | 5, 245 |
| Bso31I | GGTCTC | 2 cut(s) | 197, 1243 |
| Bsp1286I | GDGCHC | 2 cut(s) | 102, 1032 |
| Bsp143I | GATC | 2 cut(s) | 211, 1645 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1146 |
| Bsp19I | CCATGG | 1 cut(s) | 90 |
| BspACI | CCGC | 3 cut(s) | 138, 698, 1453 |
| BspANI | GGCC | 2 cut(s) | 5, 245 |
| BspHI | TCATGA | 1 cut(s) | 1522 |
| BspLI | GGNNCC | 1 cut(s) | 1555 |
| BspMAI | CTGCAG | 2 cut(s) | 1597, 1837 |
| BspMI | ACCTGC | 1 cut(s) | 397 |
| BspQI | GCTCTTC | 1 cut(s) | 422 |
| BspTI | CTTAAG | 1 cut(s) | 1562 |
| BspTNI | GGTCTC | 2 cut(s) | 197, 1243 |
| BsrBI | CCGCTC | 1 cut(s) | 698 |
| BsrI | ACTGG | 2 cut(s) | 319, 1605 |
| BssECI | CCNNGG | 4 cut(s) | 90, 141, 246, 1293 |
| BssMI | GATC | 2 cut(s) | 211, 1645 |
| BssT1I | CCWWGG | 3 cut(s) | 90, 141, 246 |
| Bst4CI | ACNGT | 3 cut(s) | 918, 1274, 1415 |
| BstAFI | CTTAAG | 1 cut(s) | 1562 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1844, 1853 |
| BstC8I | GCNNGC | 4 cut(s) | 218, 243, 744, 1569 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| BstF5I | GGATG | 5 cut(s) | 100, 151, 541, 637, 1318 |
| BstKTI | GATC | 2 cut(s) | 214, 1648 |
| BstMAI | GTCTC | 4 cut(s) | 197, 838, 1243, 1728 |
| BstMBI | GATC | 2 cut(s) | 211, 1645 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 572, 1844, 1853 |
| BstNSI | RCATGY | 1 cut(s) | 746 |
| BstSFI | CTRYAG | 2 cut(s) | 1593, 1833 |
| BstV1I | GCAGC | 4 cut(s) | 1607, 1756, 1819, 1847 |
| BstV2I | GAAGAC | 2 cut(s) | 1341, 1373 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 91 |
| BsuRI | GGCC | 2 cut(s) | 5, 245 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 5 cut(s) | 100, 151, 541, 637, 1318 |
| BtsI | GCAGTG | 4 cut(s) | 1190, 1213, 1590, 1757 |
| BtsIMutI | CAGTG | 5 cut(s) | 1190, 1213, 1590, 1598, 1757 |
| BveI | ACCTGC | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 4 cut(s) | 218, 243, 744, 1569 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1841 |
| CciI | TCATGA | 1 cut(s) | 1522 |
| Cfr13I | GGNCC | 1 cut(s) | 1290 |
| Csp6I | GTAC | 1 cut(s) | 624 |
| CviAII | CATG | 5 cut(s) | 91, 743, 830, 1203, 1523 |
| CviQI | GTAC | 1 cut(s) | 624 |
| DpnI | GATC | 2 cut(s) | 213, 1647 |
| DpnII | GATC | 2 cut(s) | 211, 1645 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1807 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1807 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 3 cut(s) | 90, 141, 246 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco31I | GGTCTC | 2 cut(s) | 197, 1243 |
| Eco47I | GGWCC | 1 cut(s) | 1290 |
| Eco57I | CTGAAG | 3 cut(s) | 138, 1263, 1638 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| EcoT14I | CCWWGG | 3 cut(s) | 90, 141, 246 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| ErhI | CCWWGG | 3 cut(s) | 90, 141, 246 |
| FaeI | CATG | 5 cut(s) | 94, 746, 833, 1206, 1526 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 191, 223, 831, 863 |
| FaqI | GGGAC | 3 cut(s) | 43, 163, 1004 |
| FatI | CATG | 5 cut(s) | 90, 742, 829, 1202, 1522 |
| FauNDI | CATATG | 2 cut(s) | 1675, 1849 |
| FbaI | TGATCA | 1 cut(s) | 1645 |
| Fnu4HI | GCNGC | 5 cut(s) | 1453, 1596, 1745, 1833, 1836 |
| FokI | GGATG | 5 cut(s) | 107, 158, 548, 644, 1325 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 5 cut(s) | 1453, 1596, 1745, 1833, 1836 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GluI | GCNGC | 5 cut(s) | 1453, 1596, 1745, 1833, 1836 |
| GsaI | CCCAGC | 1 cut(s) | 529 |
| HaeIII | GGCC | 2 cut(s) | 5, 245 |
| Hin1II | CATG | 5 cut(s) | 94, 746, 833, 1206, 1526 |
| HincII | GTYRAC | 4 cut(s) | 270, 312, 1047, 1270 |
| HindII | GTYRAC | 4 cut(s) | 270, 312, 1047, 1270 |
| HindIII | AAGCTT | 2 cut(s) | 1652, 1704 |
| HinfI | GANTC | 7 cut(s) | 230, 260, 749, 1077, 1460, 1544, 1754 |
| HpaI | GTTAAC | 1 cut(s) | 1047 |
| HphI | GGTGA | 2 cut(s) | 409, 553 |
| Hpy166II | GTNNAC | 4 cut(s) | 270, 312, 1047, 1270 |
| Hpy188III | TCNNGA | 3 cut(s) | 1130, 1523, 1798 |
| Hpy8I | GTNNAC | 4 cut(s) | 270, 312, 1047, 1270 |
| HpyCH4III | ACNGT | 3 cut(s) | 918, 1274, 1415 |
| HpyCH4IV | ACGT | 1 cut(s) | 1422 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 572, 1844, 1853 |
| HpySE526I | ACGT | 1 cut(s) | 1422 |
| Hsp92II | CATG | 5 cut(s) | 94, 746, 833, 1206, 1526 |
| Ksp22I | TGATCA | 1 cut(s) | 1645 |
| KspAI | GTTAAC | 1 cut(s) | 1047 |
| Kzo9I | GATC | 2 cut(s) | 211, 1645 |
| LguI | GCTCTTC | 1 cut(s) | 422 |
| LmnI | GCTCC | 5 cut(s) | 198, 871, 1027, 1069, 1553 |
| Lsp1109I | GCAGC | 4 cut(s) | 1607, 1756, 1819, 1847 |
| LweI | GCATC | 6 cut(s) | 228, 1252, 1332, 1476, 1681, 1847 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MaeII | ACGT | 1 cut(s) | 1422 |
| MaeIII | GTNAC | 5 cut(s) | 16, 760, 1409, 1415, 1755 |
| MalI | GATC | 2 cut(s) | 213, 1647 |
| MbiI | CCGCTC | 1 cut(s) | 698 |
| MboI | GATC | 2 cut(s) | 211, 1645 |
| MhlI | GDGCHC | 2 cut(s) | 102, 1032 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 4 cut(s) | 239, 758, 1469, 1763 |
| MmeI | TCCRAC | 4 cut(s) | 279, 327, 732, 1711 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1706, 1793 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 6 cut(s) | 927, 954, 996, 1046, 1374, 1563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 89 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 1 cut(s) | 1562 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 572, 1844, 1853 |
| NcoI | CCATGG | 1 cut(s) | 90 |
| NdeI | CATATG | 2 cut(s) | 1675, 1849 |
| NdeII | GATC | 2 cut(s) | 211, 1645 |
| NlaIII | CATG | 5 cut(s) | 94, 746, 833, 1206, 1526 |
| NlaIV | GGNNCC | 1 cut(s) | 1555 |
| NmuCI | GTSAC | 4 cut(s) | 16, 1409, 1415, 1755 |
| NspI | RCATGY | 1 cut(s) | 746 |
| PaeI | GCATGC | 1 cut(s) | 746 |
| PagI | TCATGA | 1 cut(s) | 1522 |
| PciSI | GCTCTTC | 1 cut(s) | 422 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1706, 1793 |
| PfeI | GAWTC | 3 cut(s) | 260, 1077, 1544 |
| PkrI | GCNGC | 5 cut(s) | 1454, 1597, 1746, 1834, 1837 |
| PleI | GAGTC | 4 cut(s) | 238, 757, 1468, 1762 |
| PpsI | GAGTC | 4 cut(s) | 238, 757, 1468, 1762 |
| PshBI | ATTAAT | 1 cut(s) | 954 |
| Psp1406I | AACGTT | 1 cut(s) | 1422 |
| PspFI | CCCAGC | 1 cut(s) | 525 |
| PspN4I | GGNNCC | 1 cut(s) | 1555 |
| PspPI | GGNCC | 1 cut(s) | 1290 |
| PstI | CTGCAG | 2 cut(s) | 1597, 1837 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1841 |
| RsaI | GTAC | 1 cut(s) | 625 |
| RsaNI | GTAC | 1 cut(s) | 624 |
| RseI | CAYNNNNRTG | 1 cut(s) | 89 |
| SapI | GCTCTTC | 1 cut(s) | 422 |
| SaqAI | TTAA | 6 cut(s) | 927, 954, 996, 1046, 1374, 1563 |
| SatI | GCNGC | 5 cut(s) | 1453, 1596, 1745, 1833, 1836 |
| Sau3AI | GATC | 2 cut(s) | 211, 1645 |
| Sau96I | GGNCC | 1 cut(s) | 1290 |
| SchI | GAGTC | 4 cut(s) | 239, 758, 1469, 1763 |
| SduI | GDGCHC | 2 cut(s) | 102, 1032 |
| SfaNI | GCATC | 6 cut(s) | 228, 1252, 1332, 1476, 1681, 1847 |
| SfcI | CTRYAG | 2 cut(s) | 1593, 1833 |
| SinI | GGWCC | 1 cut(s) | 1290 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 89 |
| SmlI | CTYRAG | 3 cut(s) | 173, 197, 1562 |
| SmoI | CTYRAG | 3 cut(s) | 173, 197, 1562 |
| SphI | GCATGC | 1 cut(s) | 746 |
| SsiI | CCGC | 3 cut(s) | 138, 698, 1453 |
| SspMI | CTAG | 1 cut(s) | 273 |
| StyI | CCWWGG | 3 cut(s) | 90, 141, 246 |
| TaaI | ACNGT | 3 cut(s) | 918, 1274, 1415 |
| TaiI | ACGT | 1 cut(s) | 1425 |
| TaqI | TCGA | 1 cut(s) | 853 |
| TatI | WGTACW | 1 cut(s) | 623 |
| TauI | GCSGC | 1 cut(s) | 1455 |
| TfiI | GAWTC | 3 cut(s) | 260, 1077, 1544 |
| Tru1I | TTAA | 6 cut(s) | 927, 954, 996, 1046, 1374, 1563 |
| Tru9I | TTAA | 6 cut(s) | 927, 954, 996, 1046, 1374, 1563 |
| TscAI | CASTG | 5 cut(s) | 1197, 1213, 1597, 1605, 1764 |
| TseFI | GTSAC | 4 cut(s) | 16, 1409, 1415, 1755 |
| TseI | GCWGC | 4 cut(s) | 1595, 1744, 1832, 1835 |
| Tsp45I | GTSAC | 4 cut(s) | 16, 1409, 1415, 1755 |
| TspDTI | ATGAA | 6 cut(s) | 485, 648, 879, 1191, 1242, 1511 |
| TspRI | CASTG | 5 cut(s) | 1197, 1213, 1597, 1605, 1764 |
| Vha464I | CTTAAG | 1 cut(s) | 1562 |
| VpaK11BI | GGWCC | 1 cut(s) | 1290 |
| VspI | ATTAAT | 1 cut(s) | 954 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| XapI | RAATTY | 5 cut(s) | 895, 1198, 1518, 1538, 1665 |
| XceI | RCATGY | 1 cut(s) | 746 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 253 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1706, 1793 |
| XspI | CTAG | 1 cut(s) | 273 |