No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05130 AT5G27330 |
| fragaria_vesca | FvH4_6g04961 |
| malus_domestica | MD04G1212300.v1.1 MD12G1227100.v1.1 |
| prunus_persica | Prupe.6G332700_v2.0.a1 |
| pyrus_communis | pycom04g18840 pycom12g21180 |
| rosa_chinensis | RchiOBHm_Chr3g0453461 |
| rosa_laevigata | RLG00000025512 |
| rosa_multiflora | Rmu_sc0000510.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00430430 |
| rosa_rugosa | Rorug02G0649200 |
| rosa_samantha | Rh3AG052000 Rh3BG053500 Rh3CG052800 Rh3DG053600 |
| rosa_wichuraiana | Rw3G004010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 151 |
| Acc36I | ACCTGC | 1 cut(s) | 151 |
| AccII | CGCG | 1 cut(s) | 1471 |
| AciI | CCGC | 8 cut(s) | 72, 151, 188, 419, 806, 1471, 1497, 1586 |
| AcoI | YGGCCR | 3 cut(s) | 3, 501, 666 |
| AcsI | RAATTY | 6 cut(s) | 572, 1102, 1210, 1422, 1442, 1569 |
| AcuI | CTGAAG | 4 cut(s) | 416, 1167, 1226, 1508 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 160, 324, 469, 1408 |
| AgsI | TTSAA | 8 cut(s) | 523, 529, 586, 641, 712, 964, 1448, 1746 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 923, 955, 1121, 1153 |
| AluBI | AGCT | 7 cut(s) | 100, 205, 347, 415, 448, 997, 1742 |
| AluI | AGCT | 7 cut(s) | 100, 205, 347, 415, 448, 997, 1742 |
| Alw26I | GTCTC | 3 cut(s) | 134, 1632, 1665 |
| Ama87I | CYCGRG | 2 cut(s) | 101, 1655 |
| AoxI | GGCC | 7 cut(s) | 3, 114, 180, 315, 501, 666, 1344 |
| ApeKI | GCWGC | 5 cut(s) | 130, 157, 1499, 1736, 1739 |
| ApoI | RAATTY | 6 cut(s) | 572, 1102, 1210, 1422, 1442, 1569 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1459, 1491 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1569, 1610, 1697 |
| AspLEI | GCGC | 1 cut(s) | 1684 |
| AspS9I | GGNCC | 3 cut(s) | 115, 148, 316 |
| AsuC2I | CCSGG | 3 cut(s) | 218, 464, 769 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| AvaI | CYCGRG | 2 cut(s) | 101, 1655 |
| AvaII | GGWCC | 1 cut(s) | 148 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 90, 429 |
| BbsI | GAAGAC | 2 cut(s) | 1245, 1277 |
| BbvCI | CCTCAGC | 1 cut(s) | 348 |
| BbvI | GCAGC | 5 cut(s) | 117, 169, 1511, 1723, 1751 |
| BccI | CCATC | 3 cut(s) | 30, 433, 1624 |
| BclI | TGATCA | 1 cut(s) | 1549 |
| BcnI | CCSGG | 3 cut(s) | 218, 464, 769 |
| BcoDI | GTCTC | 3 cut(s) | 134, 1632, 1665 |
| BfmI | CTRYAG | 2 cut(s) | 1664, 1737 |
| BfuAI | ACCTGC | 1 cut(s) | 151 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 509 |
| BisI | GCNGC | 6 cut(s) | 72, 131, 158, 1500, 1737, 1740 |
| BlpI | GCTNAGC | 1 cut(s) | 449 |
| BlsI | GCNGC | 6 cut(s) | 73, 132, 159, 1501, 1738, 1741 |
| Bme1390I | CCNGG | 3 cut(s) | 218, 464, 769 |
| Bme18I | GGWCC | 1 cut(s) | 148 |
| BmeT110I | CYCGRG | 2 cut(s) | 101, 1655 |
| BmgT120I | GGNCC | 3 cut(s) | 115, 148, 316 |
| BmiI | GGNNCC | 2 cut(s) | 215, 1459 |
| BmrFI | CCNGG | 3 cut(s) | 218, 464, 769 |
| BmrI | ACTGGG | 1 cut(s) | 313 |
| BmsI | GCATC | 3 cut(s) | 1156, 1380, 1585 |
| BmuI | ACTGGG | 1 cut(s) | 313 |
| BpiI | GAAGAC | 2 cut(s) | 1245, 1277 |
| Bpu10I | CCTNAGC | 1 cut(s) | 348 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 449 |
| BpuEI | CTTGAG | 2 cut(s) | 95, 119 |
| BpuMI | CCSGG | 3 cut(s) | 218, 464, 769 |
| BsaI | GGTCTC | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 5 cut(s) | 144, 183, 504, 1332, 1347 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 74, 104, 1303, 1333, 1343, 1373 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 160, 324, 469, 1408 |
| Bse118I | RCCGGY | 2 cut(s) | 153, 1356 |
| Bse1I | ACTGG | 3 cut(s) | 177, 319, 1545 |
| Bse3DI | GCAATG | 3 cut(s) | 599, 654, 1326 |
| BseDI | CCNNGG | 5 cut(s) | 144, 183, 504, 1332, 1347 |
| BseGI | GGATG | 5 cut(s) | 409, 1106, 1222, 1517, 1600 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 160, 324, 469, 1408 |
| BseMI | GCAATG | 3 cut(s) | 599, 654, 1326 |
| BseMII | CTCAG | 7 cut(s) | 197, 339, 440, 675, 945, 1298, 1427 |
| BseNI | ACTGG | 3 cut(s) | 177, 319, 1545 |
| BseRI | GAGGAG | 6 cut(s) | 349, 425, 521, 833, 1235, 1324 |
| BseXI | GCAGC | 5 cut(s) | 117, 169, 1511, 1723, 1751 |
| BseYI | CCCAGC | 1 cut(s) | 201 |
| BsgI | GTGCAG | 2 cut(s) | 197, 629 |
| Bsh1236I | CGCG | 1 cut(s) | 1471 |
| Bsh1285I | CGRYCG | 1 cut(s) | 702 |
| BshFI | GGCC | 7 cut(s) | 5, 116, 182, 317, 503, 668, 1346 |
| BsiEI | CGRYCG | 1 cut(s) | 702 |
| BsiHKCI | CYCGRG | 2 cut(s) | 101, 1655 |
| BsiSI | CCGG | 5 cut(s) | 154, 217, 463, 768, 1357 |
| BslFI | GGGAC | 2 cut(s) | 184, 844 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 160, 324, 469, 1408 |
| BsmAI | GTCTC | 3 cut(s) | 134, 1632, 1665 |
| BsmFI | GGGAC | 2 cut(s) | 184, 844 |
| BsmI | GAATGC | 2 cut(s) | 1135, 1612 |
| BsnI | GGCC | 7 cut(s) | 5, 116, 182, 317, 503, 668, 1346 |
| Bso31I | GGTCTC | 1 cut(s) | 134 |
| BsoBI | CYCGRG | 2 cut(s) | 101, 1655 |
| Bsp1286I | GDGCHC | 2 cut(s) | 90, 429 |
| Bsp143I | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 449 |
| Bsp19I | CCATGG | 1 cut(s) | 1347 |
| BspACI | CCGC | 8 cut(s) | 72, 151, 188, 419, 806, 1471, 1497, 1586 |
| BspANI | GGCC | 7 cut(s) | 5, 116, 182, 317, 503, 668, 1346 |
| BspCNI | CTCAG | 7 cut(s) | 198, 340, 441, 676, 946, 1299, 1426 |
| BspFNI | CGCG | 1 cut(s) | 1471 |
| BspLI | GGNNCC | 2 cut(s) | 215, 1459 |
| BspMAI | CTGCAG | 2 cut(s) | 1668, 1741 |
| BspMI | ACCTGC | 1 cut(s) | 151 |
| BspQI | GCTCTTC | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 3 cut(s) | 599, 654, 1326 |
| BsrFI | RCCGGY | 2 cut(s) | 153, 1356 |
| BsrI | ACTGG | 3 cut(s) | 177, 319, 1545 |
| BssAI | RCCGGY | 2 cut(s) | 153, 1356 |
| BssECI | CCNNGG | 5 cut(s) | 144, 183, 504, 1332, 1347 |
| BssMI | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| BssT1I | CCWWGG | 3 cut(s) | 144, 183, 1347 |
| Bst6I | CTCTTC | 8 cut(s) | 251, 392, 476, 707, 867, 872, 998, 1688 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 459 |
| BstC8I | GCNNGC | 7 cut(s) | 155, 180, 417, 501, 681, 1473, 1504 |
| BstDEI | CTNAG | 7 cut(s) | 206, 348, 449, 684, 954, 1307, 1413 |
| BstDSI | CCRYGG | 1 cut(s) | 1347 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1406 |
| BstF5I | GGATG | 5 cut(s) | 409, 1106, 1222, 1517, 1600 |
| BstFNI | CGCG | 1 cut(s) | 1471 |
| BstHHI | GCGC | 1 cut(s) | 1684 |
| BstKTI | GATC | 4 cut(s) | 702, 1177, 1552, 1713 |
| BstMAI | GTCTC | 3 cut(s) | 134, 1632, 1665 |
| BstMBI | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| BstMCI | CGRYCG | 1 cut(s) | 702 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 459, 509, 1748 |
| BstNSI | RCATGY | 2 cut(s) | 683, 815 |
| BstSCI | CCNGG | 3 cut(s) | 216, 462, 767 |
| BstSFI | CTRYAG | 2 cut(s) | 1664, 1737 |
| BstUI | CGCG | 1 cut(s) | 1471 |
| BstV1I | GCAGC | 5 cut(s) | 117, 169, 1511, 1723, 1751 |
| BstV2I | GAAGAC | 2 cut(s) | 1245, 1277 |
| BsuRI | GGCC | 7 cut(s) | 5, 116, 182, 317, 503, 668, 1346 |
| BtgI | CCRYGG | 1 cut(s) | 1347 |
| BtgZI | GCGATG | 1 cut(s) | 377 |
| BtsCI | GGATG | 5 cut(s) | 409, 1106, 1222, 1517, 1600 |
| BtsI | GCAGTG | 1 cut(s) | 57 |
| BtsIMutI | CAGTG | 3 cut(s) | 57, 170, 1552 |
| BveI | ACCTGC | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 7 cut(s) | 155, 180, 417, 501, 681, 1473, 1504 |
| CfoI | GCGC | 1 cut(s) | 1684 |
| Cfr10I | RCCGGY | 2 cut(s) | 153, 1356 |
| Cfr13I | GGNCC | 3 cut(s) | 115, 148, 316 |
| CseI | GACGC | 1 cut(s) | 1477 |
| CviAII | CATG | 3 cut(s) | 680, 812, 1348 |
| DdeI | CTNAG | 7 cut(s) | 206, 348, 449, 684, 954, 1307, 1413 |
| DpnI | GATC | 4 cut(s) | 701, 1176, 1551, 1712 |
| DpnII | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| EaeI | YGGCCR | 3 cut(s) | 3, 501, 666 |
| Eam1104I | CTCTTC | 8 cut(s) | 251, 392, 476, 707, 867, 872, 998, 1688 |
| EarI | CTCTTC | 8 cut(s) | 251, 392, 476, 707, 867, 872, 998, 1688 |
| EciI | GGCGGA | 1 cut(s) | 1601 |
| Eco130I | CCWWGG | 3 cut(s) | 144, 183, 1347 |
| Eco24I | GRGCYC | 2 cut(s) | 90, 429 |
| Eco31I | GGTCTC | 1 cut(s) | 134 |
| Eco47I | GGWCC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 4 cut(s) | 416, 1167, 1226, 1508 |
| Eco88I | CYCGRG | 2 cut(s) | 101, 1655 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1406 |
| EcoO109I | RGGNCCY | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 3 cut(s) | 144, 183, 1347 |
| EcoT38I | GRGCYC | 2 cut(s) | 90, 429 |
| ErhI | CCWWGG | 3 cut(s) | 144, 183, 1347 |
| FaeI | CATG | 3 cut(s) | 683, 815, 1351 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1155, 1187 |
| FaqI | GGGAC | 2 cut(s) | 184, 844 |
| FatI | CATG | 3 cut(s) | 679, 811, 1347 |
| FauI | CCCGC | 4 cut(s) | 181, 412, 799, 1464 |
| FauNDI | CATATG | 1 cut(s) | 1753 |
| FbaI | TGATCA | 1 cut(s) | 1549 |
| Fnu4HI | GCNGC | 6 cut(s) | 72, 131, 158, 1500, 1737, 1740 |
| FokI | GGATG | 5 cut(s) | 416, 1093, 1229, 1504, 1607 |
| FriOI | GRGCYC | 2 cut(s) | 90, 429 |
| Fsp4HI | GCNGC | 6 cut(s) | 72, 131, 158, 1500, 1737, 1740 |
| GlaI | GCGC | 1 cut(s) | 1683 |
| GluI | GCNGC | 6 cut(s) | 72, 131, 158, 1500, 1737, 1740 |
| GsaI | CCCAGC | 1 cut(s) | 205 |
| HaeIII | GGCC | 7 cut(s) | 5, 116, 182, 317, 503, 668, 1346 |
| HapII | CCGG | 5 cut(s) | 154, 217, 463, 768, 1357 |
| HgaI | GACGC | 1 cut(s) | 1477 |
| HhaI | GCGC | 1 cut(s) | 1684 |
| Hin1II | CATG | 3 cut(s) | 683, 815, 1351 |
| Hin6I | GCGC | 1 cut(s) | 1682 |
| HinP1I | GCGC | 1 cut(s) | 1682 |
| HincII | GTYRAC | 1 cut(s) | 1467 |
| HindII | GTYRAC | 1 cut(s) | 1467 |
| HinfI | GANTC | 8 cut(s) | 197, 208, 230, 686, 981, 1364, 1448, 1658 |
| HpaII | CCGG | 5 cut(s) | 154, 217, 463, 768, 1357 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 1467 |
| Hpy188III | TCNNGA | 6 cut(s) | 103, 436, 901, 1288, 1427, 1702 |
| Hpy8I | GTNNAC | 1 cut(s) | 1467 |
| Hpy99I | CGWCG | 1 cut(s) | 1115 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 459, 509, 1748 |
| HpyF3I | CTNAG | 7 cut(s) | 206, 348, 449, 684, 954, 1307, 1413 |
| Hsp92II | CATG | 3 cut(s) | 683, 815, 1351 |
| HspAI | GCGC | 1 cut(s) | 1682 |
| KroI | GCCGGC | 1 cut(s) | 153 |
| KroNI | GCCGGC | 1 cut(s) | 155 |
| Ksp22I | TGATCA | 1 cut(s) | 1549 |
| Kzo9I | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| LguI | GCTCTTC | 1 cut(s) | 251 |
| LmnI | GCTCC | 2 cut(s) | 412, 889 |
| Lsp1109I | GCAGC | 5 cut(s) | 117, 169, 1511, 1723, 1751 |
| LweI | GCATC | 3 cut(s) | 1156, 1380, 1585 |
| MaeIII | GTNAC | 3 cut(s) | 16, 949, 1180 |
| MalI | GATC | 4 cut(s) | 701, 1176, 1551, 1712 |
| MboI | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| MfeI | CAATTG | 1 cut(s) | 1746 |
| MhlI | GDGCHC | 2 cut(s) | 90, 429 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 5 cut(s) | 206, 217, 239, 695, 1667 |
| MmeI | TCCRAC | 9 cut(s) | 258, 264, 669, 825, 1134, 1278, 1341, 1572, 1615 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroNI | GCCGGC | 1 cut(s) | 153 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1569, 1610, 1697 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 5 cut(s) | 858, 908, 1244, 1278, 1374 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 205 |
| MspI | CCGG | 5 cut(s) | 154, 217, 463, 768, 1357 |
| MspR9I | CCNGG | 3 cut(s) | 218, 464, 769 |
| MunI | CAATTG | 1 cut(s) | 1746 |
| Mva1269I | GAATGC | 2 cut(s) | 1135, 1612 |
| MvnI | CGCG | 1 cut(s) | 1471 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 459, 509, 1748 |
| NaeI | GCCGGC | 1 cut(s) | 155 |
| NciI | CCSGG | 3 cut(s) | 218, 464, 769 |
| NcoI | CCATGG | 1 cut(s) | 1347 |
| NdeI | CATATG | 1 cut(s) | 1753 |
| NdeII | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| NgoMIV | GCCGGC | 1 cut(s) | 153 |
| NlaIII | CATG | 3 cut(s) | 683, 815, 1351 |
| NlaIV | GGNNCC | 2 cut(s) | 215, 1459 |
| NmeAIII | GCCGAG | 3 cut(s) | 529, 694, 1357 |
| NmuCI | GTSAC | 1 cut(s) | 16 |
| NspI | RCATGY | 2 cut(s) | 683, 815 |
| PaeI | GCATGC | 1 cut(s) | 683 |
| PaeR7I | CTCGAG | 2 cut(s) | 101, 1655 |
| PaqCI | CACCTGC | 1 cut(s) | 151 |
| PciSI | GCTCTTC | 1 cut(s) | 251 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 90, 695 |
| PctI | GAATGC | 2 cut(s) | 1135, 1612 |
| PdiI | GCCGGC | 1 cut(s) | 155 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1569, 1610, 1697 |
| PfeI | GAWTC | 3 cut(s) | 981, 1364, 1448 |
| PkrI | GCNGC | 6 cut(s) | 73, 132, 159, 1501, 1738, 1741 |
| Ple19I | CGATCG | 1 cut(s) | 702 |
| PleI | GAGTC | 5 cut(s) | 205, 216, 238, 694, 1666 |
| PpsI | GAGTC | 5 cut(s) | 205, 216, 238, 694, 1666 |
| PspFI | CCCAGC | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 2 cut(s) | 215, 1459 |
| PspPI | GGNCC | 3 cut(s) | 115, 148, 316 |
| PspXI | VCTCGAGB | 1 cut(s) | 1655 |
| PstI | CTGCAG | 2 cut(s) | 1668, 1741 |
| PvuI | CGATCG | 1 cut(s) | 702 |
| PvuII | CAGCTG | 1 cut(s) | 205 |
| SapI | GCTCTTC | 1 cut(s) | 251 |
| SaqAI | TTAA | 5 cut(s) | 858, 908, 1244, 1278, 1374 |
| SatI | GCNGC | 6 cut(s) | 72, 131, 158, 1500, 1737, 1740 |
| Sau3AI | GATC | 4 cut(s) | 699, 1174, 1549, 1710 |
| Sau96I | GGNCC | 3 cut(s) | 115, 148, 316 |
| SchI | GAGTC | 5 cut(s) | 206, 217, 239, 695, 1667 |
| ScrFI | CCNGG | 3 cut(s) | 218, 464, 769 |
| SduI | GDGCHC | 2 cut(s) | 90, 429 |
| SfaNI | GCATC | 3 cut(s) | 1156, 1380, 1585 |
| SfcI | CTRYAG | 2 cut(s) | 1664, 1737 |
| Sfr274I | CTCGAG | 2 cut(s) | 101, 1655 |
| SinI | GGWCC | 1 cut(s) | 148 |
| SlaI | CTCGAG | 2 cut(s) | 101, 1655 |
| SmlI | CTYRAG | 4 cut(s) | 101, 110, 134, 1655 |
| SmoI | CTYRAG | 4 cut(s) | 101, 110, 134, 1655 |
| SphI | GCATGC | 1 cut(s) | 683 |
| SsiI | CCGC | 8 cut(s) | 72, 151, 188, 419, 806, 1471, 1497, 1586 |
| StyD4I | CCNGG | 3 cut(s) | 216, 462, 767 |
| StyI | CCWWGG | 3 cut(s) | 144, 183, 1347 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 3 cut(s) | 981, 1364, 1448 |
| Tru1I | TTAA | 5 cut(s) | 858, 908, 1244, 1278, 1374 |
| Tru9I | TTAA | 5 cut(s) | 858, 908, 1244, 1278, 1374 |
| TscAI | CASTG | 3 cut(s) | 64, 177, 1552 |
| TseFI | GTSAC | 1 cut(s) | 16 |
| TseI | GCWGC | 5 cut(s) | 130, 157, 1499, 1736, 1739 |
| Tsp45I | GTSAC | 1 cut(s) | 16 |
| TspDTI | ATGAA | 4 cut(s) | 689, 816, 927, 1095 |
| TspRI | CASTG | 3 cut(s) | 64, 177, 1552 |
| VpaK11BI | GGWCC | 1 cut(s) | 148 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1406 |
| XapI | RAATTY | 6 cut(s) | 572, 1102, 1210, 1422, 1442, 1569 |
| XceI | RCATGY | 2 cut(s) | 683, 815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 190 |
| XhoI | CTCGAG | 2 cut(s) | 101, 1655 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1569, 1610, 1697 |