Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Forward (+)

75821320 .. 75823105

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0649200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTTGTGGCATTTCCAGGGTTGGACGGAATTATGTGGGTGCAGATGACCAAAGTCCCGCTTCTGAAAGTAAGCCCCAGCCGCAGCAGGGGGTTGATTCCGTAGACGGCGTGAAGGAGAAAGAAAGTTCACCATCACCTTCACCGTCATCGGCACCCGCACCCGCACCGGCACCGGCACGGGGATTAGAAAGACCAGAGATTGAGAGGATCAAATTAGACCGACCCAAAAGTAAGGAGGATGCAGACAACAACGACAACAACAAACATGGTCATGAACAGCGGGATGATAGCATCTTTAACTATCCTCGTTCCCCCAGTTTTAGGGAATATTGCACAGACTCTGAAATTCGATTTGGGGTCGACAGCAGCCCGGACAATGATGGTGATGATATTGATACTCGTGGAACAAGTAGGAAAATTTGCAAATCAGCAATGTCATCTCCGACTCCAAATACACGAGACAAGCAGCTGGTGCTACAGCCGGGATCAAACGGTGAATTAGCAACGGAGGCTAAAGATGAGAGCAAAGGAAGAACATCAACGTTGTCAACAACGGGACTAAAAATTAGAAATGTGTTGGGGAACAAATGGGGGCGGAGCAGTGGTGCATCAAGAATAAGATCCTACTTTCAAGTATCCAGTTGGCACAGAACCCCTTTTTTCACTAAATCAGTTGCAAAAGCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

230

Amino Acids

25.07

Weight (kDa)

8.38

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	154, 172
AccI	GTMKAC	2 cut(s)	105, 363
AciI	CCGC	6 cut(s)	60, 83, 159, 165, 283, 598
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	3 cut(s)	218, 496, 618
AcsI	RAATTY	2 cut(s)	348, 420
AfiI	CCNNNNNNNGG	3 cut(s)	89, 182, 324
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	3 cut(s)	218, 496, 618
AlwNI	CAGNNNCTG	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	85, 369, 469
ApoI	RAATTY	2 cut(s)	348, 420
AsuC2I	CCSGG	2 cut(s)	374, 486
AsuHPI	GGTGA	5 cut(s)	123, 129, 135, 398, 509
BanI	GGYRCC	2 cut(s)	154, 172
BauI	CACGAG	2 cut(s)	402, 459
BbvI	GCAGC	3 cut(s)	97, 381, 481
BccI	CCATC	2 cut(s)	142, 377
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	649
BcnI	CCSGG	2 cut(s)	374, 486
BcoDI	GTCTC	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	83, 86, 370, 470
BlsI	GCNGC	4 cut(s)	84, 87, 371, 471
Bme1390I	CCNGG	3 cut(s)	19, 374, 486
BmiI	GGNNCC	2 cut(s)	156, 174
BmrFI	CCNGG	3 cut(s)	19, 374, 486
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	232, 303, 620
BmuI	ACTGGG	1 cut(s)	312
BoxI	GACNNNNGTC	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	374, 486
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 182, 324
Bse118I	RCCGGY	2 cut(s)	169, 175
Bse1I	ACTGG	2 cut(s)	318, 642
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	247, 292
BseLI	CCNNNNNNNGG	3 cut(s)	89, 182, 324
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	318, 642
BseXI	GCAGC	3 cut(s)	97, 381, 481
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	63
BshNI	GGYRCC	2 cut(s)	154, 172
BsiSI	CCGG	4 cut(s)	170, 176, 374, 485
BslFI	GGGAC	2 cut(s)	42, 573
BslI	CCNNNNNNNGG	3 cut(s)	89, 182, 324
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	42, 573
Bsp143I	GATC	3 cut(s)	210, 488, 623
BspACI	CCGC	6 cut(s)	60, 83, 159, 165, 283, 598
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	156, 174
BspPI	GGATC	3 cut(s)	218, 496, 618
BspT107I	GGYRCC	2 cut(s)	154, 172
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	2 cut(s)	169, 175
BsrI	ACTGG	2 cut(s)	318, 642
BssAI	RCCGGY	2 cut(s)	169, 175
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	210, 488, 623
BssSI	CACGAG	2 cut(s)	402, 459
Bst2BI	CACGAG	2 cut(s)	402, 459
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	147, 497
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	247, 292
BstKTI	GATC	3 cut(s)	213, 491, 626
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	210, 488, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 475, 512
BstNI	CCWGG	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	17, 372, 484
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	97, 381, 481
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	247, 292
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	274
Cfr10I	RCCGGY	2 cut(s)	169, 175
CviAII	CATG	2 cut(s)	269, 275
CviJI	RGCY	7 cut(s)	76, 82, 372, 472, 484, 515, 686
CviKI_1	RGCY	7 cut(s)	76, 82, 372, 472, 484, 515, 686
DpnI	GATC	3 cut(s)	212, 490, 625
DpnII	GATC	3 cut(s)	210, 488, 623
EciI	GGCGGA	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	272, 278
FaiI	YATR	3 cut(s)	36, 270, 276
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FaqI	GGGAC	2 cut(s)	42, 573
FatI	CATG	2 cut(s)	268, 274
FauI	CCCGC	4 cut(s)	67, 166, 172, 276
FblI	GTMKAC	2 cut(s)	105, 363
Fnu4HI	GCNGC	4 cut(s)	83, 86, 370, 470
FokI	GGATG	2 cut(s)	254, 299
Fsp4HI	GCNGC	4 cut(s)	83, 86, 370, 470
GluI	GCNGC	4 cut(s)	83, 86, 370, 470
GsaI	CCCAGC	1 cut(s)	82
HapII	CCGG	4 cut(s)	170, 176, 374, 485
Hin1II	CATG	2 cut(s)	272, 278
HincII	GTYRAC	2 cut(s)	364, 552
HindII	GTYRAC	2 cut(s)	364, 552
HinfI	GANTC	3 cut(s)	98, 341, 448
HpaII	CCGG	4 cut(s)	170, 176, 374, 485
HphI	GGTGA	5 cut(s)	123, 129, 135, 398, 509
Hpy166II	GTNNAC	4 cut(s)	106, 131, 364, 552
Hpy188I	TCNGA	3 cut(s)	67, 346, 447
Hpy188III	TCNNGA	2 cut(s)	275, 615
Hpy8I	GTNNAC	4 cut(s)	106, 131, 364, 552
HpyAV	CCTTC	2 cut(s)	109, 150
HpyCH4III	ACNGT	2 cut(s)	147, 497
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	6 cut(s)	44, 245, 336, 426, 611, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 475, 512
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	272, 278
Kzo9I	GATC	3 cut(s)	210, 488, 623
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	3 cut(s)	97, 381, 481
LweI	GCATC	3 cut(s)	232, 303, 620
MaeII	ACGT	1 cut(s)	545
MalI	GATC	3 cut(s)	212, 490, 625
MboI	GATC	3 cut(s)	210, 488, 623
MboII	GAAGA	1 cut(s)	546
MflI	RGATCY	1 cut(s)	623
MluCI	AATT	6 cut(s)	31, 215, 348, 420, 500, 567
MlyI	GAGTC	2 cut(s)	335, 442
MmeI	TCCRAC	2 cut(s)	4, 470
MnlI	CCTC	4 cut(s)	201, 232, 318, 505
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	283, 472
MspI	CCGG	4 cut(s)	170, 176, 374, 485
MspR9I	CCNGG	3 cut(s)	19, 374, 486
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	82, 475, 512
NciI	CCSGG	2 cut(s)	374, 486
NdeII	GATC	3 cut(s)	210, 488, 623
NlaIII	CATG	2 cut(s)	272, 278
NlaIV	GGNNCC	2 cut(s)	156, 174
PagI	TCATGA	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	84, 87, 371, 471
PleI	GAGTC	2 cut(s)	335, 442
PpsI	GAGTC	2 cut(s)	335, 442
PshAI	GACNNNNGTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	156, 174
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	83, 86, 370, 470
Sau3AI	GATC	3 cut(s)	210, 488, 623
SchI	GAGTC	2 cut(s)	335, 442
ScrFI	CCNGG	3 cut(s)	19, 374, 486
SetI	ASST	3 cut(s)	142, 474, 548
SfaNI	GCATC	3 cut(s)	232, 303, 620
SfcI	CTRYAG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	6 cut(s)	31, 215, 348, 420, 500, 567
SsiI	CCGC	6 cut(s)	60, 83, 159, 165, 283, 598
SspI	AATATT	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	17, 372, 484
TaaI	ACNGT	2 cut(s)	147, 497
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	2 cut(s)	352, 363
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	6 cut(s)	31, 215, 348, 420, 500, 567
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	610
TseI	GCWGC	3 cut(s)	85, 369, 469
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	3 cut(s)	43, 91, 524
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	348, 420
XmiI	GTMKAC	2 cut(s)	105, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.