Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Forward (+)

2739238 .. 2741946

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04960.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGATGGGGAGGACCATGACTATCTTGACTCCAAGATGGTGGTGCCATTGAACACTTGGGTGCTGATCTCCAACTTCAAGTTGTCCTACACCCTTCTCCGTCGCCCTGACGGGGATTTTAACCGCCACCTGGCTGAGTTTCTTGACCGGAGAGAGCCAGCCAATACAATCCCAGTTGAAGGGGTTTTCTCATTTGATGTCATCATTGACAGAGAAACTAGCTTGCTGACTCGAGTCTATCGACCCGCTAGTGCTGATGCCCCGCCAAACCTGACCATTTTTGATCTCATGAAGCCTGTGGAGGATGAGATTGTTCCTGTCATTATGTGCCGCAGACTTGTTAAGACTTGCAATGCTGTTGTCGTCTCGGTGAACTATCGTCGATCACCTGAACACCGATATCCATGTGCCTATGATGATGGATGGACAACCGTGAAGTGGGTGAACTCCCGGTCCTGGCTTAGAAGTACAAAGGACTCCAAAGTTCACATTTATCTGGCTGGTGACAGCTCTGGTGGCAACATTGTACACAATGTTGCTTTGAGAGCAGCAGATTCTGAAATTGATGTGTTGGGTAACATACTGCTCAACCCAATGTTTGGTGGGCAAGAGAGAACTGCAACTGAGACACGCCTGGATGGAAAATACTTTGTCACTATCCAAGACCGTGACTGGTATTGGAGAGCTTTTCTCCCTGAAGGAGAAGATAGGGACCATCATGCATGTAATCCATTTGGCCCAAGGGGTATAAGCGTTAAAGGTCTCAAGTTCCCAAGGAGCCTTGTGGTGGTGGCTGGTTTGGATCTTGTTCAGGACTGGCAACTAGCTTATGCAAAAGGACTTGAGGATGCTGGCCAGGACGTCAAACTTCTATATCTTGAACAGGCCACCATTGGTTTTTACTTGTTGCCAAACACTGTGCATTACCACACCGTGATGAATGAGATGAGTAGCTTTGTGCGTTCTGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

326

Amino Acids

36.97

Weight (kDa)

5.62

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	73 - 148	4.3e-06	Carboxylesterase family
BD-FAE	PF20434	99 - 210	1.6e-11	BD-FAE
Abhydrolase_3	PF07859	109 - 322	2.8e-58	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	4 cut(s)	127, 249, 266, 334
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	856
AcuI	CTGAAG	1 cut(s)	720
AcyI	GRCGYC	1 cut(s)	864
AdeI	CACNNNGTG	1 cut(s)	937
AfaI	GTAC	2 cut(s)	472, 531
AfiI	CCNNNNNNNGG	7 cut(s)	115, 133, 182, 441, 459, 602, 790
AgsI	TTSAA	4 cut(s)	55, 82, 182, 884
AjnI	CCWGG	4 cut(s)	132, 458, 636, 858
AleI	CACNNNNGTG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	5 cut(s)	225, 513, 689, 830, 957
AluI	AGCT	5 cut(s)	225, 513, 689, 830, 957
Alw26I	GTCTC	3 cut(s)	373, 623, 770
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	3 cut(s)	739, 856, 888
ApeKI	GCWGC	1 cut(s)	551
AspS9I	GGNCC	4 cut(s)	16, 456, 715, 740
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	4 cut(s)	381, 385, 457, 518
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	3 cut(s)	16, 456, 715
BalI	TGGCCA	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	6 cut(s)	2, 34, 416, 420, 635, 726
BciT130I	CCWGG	4 cut(s)	134, 460, 638, 860
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	373, 623, 770
BfaI	CTAG	3 cut(s)	222, 252, 827
BisI	GCNGC	2 cut(s)	334, 552
BlsI	GCNGC	2 cut(s)	335, 553
Bme1390I	CCNGG	5 cut(s)	134, 454, 460, 638, 860
Bme18I	GGWCC	3 cut(s)	16, 456, 715
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	4 cut(s)	16, 456, 715, 740
BmiI	GGNNCC	3 cut(s)	48, 716, 782
BmrFI	CCNGG	5 cut(s)	134, 454, 460, 638, 860
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	250, 841
BmuI	ACTGGG	1 cut(s)	170
BoxI	GACNNNNGTC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	678, 710
BpuEI	CTTGAG	2 cut(s)	752, 866
BpuMI	CCSGG	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	743, 776
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 133, 182, 441, 459, 602, 790
Bse1I	ACTGG	3 cut(s)	176, 680, 824
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	4 cut(s)	134, 460, 638, 860
BseDI	CCNNGG	2 cut(s)	743, 776
BseGI	GGATG	4 cut(s)	313, 431, 646, 856
BseLI	CCNNNNNNNGG	7 cut(s)	115, 133, 182, 441, 459, 602, 790
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	129, 618
BseNI	ACTGG	3 cut(s)	176, 680, 824
BseXI	GCAGC	1 cut(s)	563
BshFI	GGCC	3 cut(s)	741, 858, 890
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	151, 454
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	7 cut(s)	115, 133, 182, 441, 459, 602, 790
BsmAI	GTCTC	3 cut(s)	373, 623, 770
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	3 cut(s)	741, 858, 890
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	69, 286, 386, 805
BspACI	CCGC	4 cut(s)	127, 249, 266, 334
BspANI	GGCC	3 cut(s)	741, 858, 890
BspCNI	CTCAG	2 cut(s)	130, 619
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	48, 716, 782
BspPI	GGATC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	176, 680, 824
BssECI	CCNNGG	2 cut(s)	743, 776
BssMI	GATC	4 cut(s)	69, 286, 386, 805
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	2 cut(s)	743, 776
Bst2UI	CCWGG	4 cut(s)	134, 460, 638, 860
Bst4CI	ACNGT	4 cut(s)	436, 671, 922, 937
BstACI	GRCGYC	1 cut(s)	864
BstAUI	TGTACA	1 cut(s)	529
BstC8I	GCNNGC	3 cut(s)	162, 227, 856
BstDEI	CTNAG	3 cut(s)	138, 464, 627
BstF5I	GGATG	4 cut(s)	313, 431, 646, 856
BstKTI	GATC	4 cut(s)	72, 289, 389, 808
BstMAI	GTCTC	3 cut(s)	373, 623, 770
BstMBI	GATC	4 cut(s)	69, 286, 386, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	519, 548
BstNI	CCWGG	4 cut(s)	134, 460, 638, 860
BstNSI	RCATGY	1 cut(s)	729
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	5 cut(s)	132, 452, 458, 636, 858
BstV1I	GCAGC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	805
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	3 cut(s)	741, 858, 890
BtsCI	GGATG	4 cut(s)	313, 431, 646, 856
BtsIMutI	CAGTG	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	162, 227, 856
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	4 cut(s)	16, 456, 715, 740
Csp6I	GTAC	2 cut(s)	471, 530
CviAII	CATG	5 cut(s)	20, 292, 408, 722, 726
CviQI	GTAC	2 cut(s)	471, 530
DdeI	CTNAG	3 cut(s)	138, 464, 627
DpnI	GATC	4 cut(s)	71, 288, 388, 807
DpnII	GATC	4 cut(s)	69, 286, 386, 805
DraIII	CACNNNGTG	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	743, 776
Eco31I	GGTCTC	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	16, 456, 715
Eco57I	CTGAAG	1 cut(s)	720
Eco88I	CYCGRG	1 cut(s)	234
EcoRII	CCWGG	4 cut(s)	132, 458, 636, 858
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	743, 776
EcoT22I	ATGCAT	1 cut(s)	727
ErhI	CCWWGG	2 cut(s)	743, 776
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	5 cut(s)	23, 295, 411, 725, 729
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	5 cut(s)	19, 291, 407, 721, 725
FauI	CCCGC	2 cut(s)	256, 273
Fnu4HI	GCNGC	2 cut(s)	334, 552
FokI	GGATG	4 cut(s)	320, 438, 653, 863
Fsp4HI	GCNGC	2 cut(s)	334, 552
FspBI	CTAG	3 cut(s)	222, 252, 827
GluI	GCNGC	2 cut(s)	334, 552
HaeIII	GGCC	3 cut(s)	741, 858, 890
HapII	CCGG	2 cut(s)	151, 454
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	5 cut(s)	23, 295, 411, 725, 729
HinfI	GANTC	5 cut(s)	32, 232, 237, 479, 557
HpaII	CCGG	2 cut(s)	151, 454
HphI	GGTGA	4 cut(s)	381, 385, 457, 518
Hpy166II	GTNNAC	4 cut(s)	376, 448, 490, 532
Hpy188I	TCNGA	2 cut(s)	562, 970
Hpy188III	TCNNGA	5 cut(s)	29, 146, 292, 815, 881
Hpy8I	GTNNAC	4 cut(s)	376, 448, 490, 532
Hpy99I	CGWCG	2 cut(s)	108, 387
HpyAV	CCTTC	3 cut(s)	107, 176, 695
HpyCH4III	ACNGT	4 cut(s)	436, 671, 922, 937
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	5 cut(s)	354, 623, 725, 836, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	519, 548
HpyF3I	CTNAG	3 cut(s)	138, 464, 627
HpySE526I	ACGT	1 cut(s)	864
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	5 cut(s)	23, 295, 411, 725, 729
Kzo9I	GATC	4 cut(s)	69, 286, 386, 805
LmnI	GCTCC	1 cut(s)	780
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	2 cut(s)	250, 841
MaeI	CTAG	3 cut(s)	222, 252, 827
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	4 cut(s)	506, 578, 655, 671
MalI	GATC	4 cut(s)	71, 288, 388, 807
MboI	GATC	4 cut(s)	69, 286, 386, 805
MboII	GAAGA	1 cut(s)	719
MflI	RGATCY	1 cut(s)	805
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	1 cut(s)	564
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	4 cut(s)	26, 226, 246, 473
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	7, 298, 841
Mox20I	TGGCCA	1 cut(s)	858
Mph1103I	ATGCAT	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	4 cut(s)	123, 345, 759, 976
MslI	CAYNNNNRTG	2 cut(s)	62, 938
Msp20I	TGGCCA	1 cut(s)	858
MspI	CCGG	2 cut(s)	151, 454
MspR9I	CCNGG	5 cut(s)	134, 454, 460, 638, 860
MvaI	CCWGG	4 cut(s)	134, 460, 638, 860
MwoI	GCNNNNNNNGC	2 cut(s)	519, 548
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	4 cut(s)	69, 286, 386, 805
NlaIII	CATG	5 cut(s)	23, 295, 411, 725, 729
NlaIV	GGNNCC	3 cut(s)	48, 716, 782
NmuCI	GTSAC	3 cut(s)	506, 655, 671
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	729
OliI	CACNNNNGTG	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	234
PagI	TCATGA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	335, 553
PleI	GAGTC	4 cut(s)	26, 226, 245, 473
PpsI	GAGTC	4 cut(s)	26, 226, 245, 473
PshAI	GACNNNNGTC	1 cut(s)	236
Psp6I	CCWGG	4 cut(s)	132, 458, 636, 858
PspGI	CCWGG	4 cut(s)	132, 458, 636, 858
PspN4I	GGNNCC	3 cut(s)	48, 716, 782
PspPI	GGNCC	4 cut(s)	16, 456, 715, 740
PspXI	VCTCGAGB	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	805
RsaI	GTAC	2 cut(s)	472, 531
RsaNI	GTAC	2 cut(s)	471, 530
RseI	CAYNNNNRTG	2 cut(s)	62, 938
SaqAI	TTAA	4 cut(s)	123, 345, 759, 976
SatI	GCNGC	2 cut(s)	334, 552
Sau3AI	GATC	4 cut(s)	69, 286, 386, 805
Sau96I	GGNCC	4 cut(s)	16, 456, 715, 740
SchI	GAGTC	4 cut(s)	26, 226, 246, 473
ScrFI	CCNGG	5 cut(s)	134, 454, 460, 638, 860
SfaNI	GCATC	2 cut(s)	250, 841
Sfr274I	CTCGAG	1 cut(s)	234
SinI	GGWCC	3 cut(s)	16, 456, 715
SlaI	CTCGAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	2 cut(s)	62, 938
SmlI	CTYRAG	3 cut(s)	234, 767, 845
SmoI	CTYRAG	3 cut(s)	234, 767, 845
Sse9I	AATT	1 cut(s)	564
SsiI	CCGC	4 cut(s)	127, 249, 266, 334
SspMI	CTAG	3 cut(s)	222, 252, 827
StyD4I	CCNGG	5 cut(s)	132, 452, 458, 636, 858
StyI	CCWWGG	2 cut(s)	743, 776
TaaI	ACNGT	4 cut(s)	436, 671, 922, 937
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	3 cut(s)	235, 244, 385
TasI	AATT	1 cut(s)	564
TatI	WGTACW	2 cut(s)	470, 529
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	4 cut(s)	123, 345, 759, 976
Tru9I	TTAA	4 cut(s)	123, 345, 759, 976
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	3 cut(s)	506, 655, 671
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	3 cut(s)	506, 655, 671
TspDTI	ATGAA	2 cut(s)	308, 956
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	925
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	3 cut(s)	16, 456, 715
XceI	RCATGY	1 cut(s)	729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	234
XspI	CTAG	3 cut(s)	222, 252, 827
ZraI	GACGTC	1 cut(s)	865
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.